genome.fa.s246.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  14  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536872--536934	21	3.0	22	77	13	69	50	4	1	42	1.32
536873--536928	26	2.2	26	81	9	62	51	3	1	42	1.29
537043--537262	108	2.0	110	96	1	408	42	6	5	46	1.51
537597--537638	16	2.5	17	80	7	59	40	2	0	57	1.12
537878--537951	29	2.6	28	79	10	78	52	2	2	41	1.29
538159--538205	20	2.3	21	79	17	55	55	2	0	42	1.12
538899--538957	27	2.1	27	84	3	82	49	0	6	44	1.29
539329--539379	20	2.5	20	75	12	52	43	1	0	54	1.11
539892--539975	19	3.8	21	73	20	57	41	1	2	54	1.21
540234--540308	30	2.5	30	81	10	91	50	5	0	44	1.24
540516--540593	30	2.6	32	80	11	85	47	0	1	51	1.09
540497--540562	17	4.1	17	72	18	61	46	0	0	53	1.00
540621--540669	18	2.8	18	78	15	57	44	6	10	38	1.63
542160--542204	19	2.2	21	84	7	58	46	0	0	53	1.00
542162--542202	12	3.3	12	83	6	55	43	0	0	56	0.99
543399--544811	181	7.8	180	78	5	1206	40	7	10	41	1.68
544870--545172	162	1.9	161	81	6	371	38	10	11	39	1.77
545094--545426	181	1.8	181	80	3	402	44	9	8	38	1.66
545633--546881	181	7.0	181	77	7	1022	41	9	8	40	1.67
546901--548097	180	6.7	179	74	7	747	41	9	7	40	1.67
547878--547910	18	1.9	17	88	11	50	39	6	6	48	1.53
547699--548097	177	2.2	177	79	9	391	40	10	7	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548847--548897	11	5.1	10	74	25	54	47	1	0	50	1.12
549942--550013	28	2.9	23	75	25	67	47	0	4	48	1.21
550952--551379	182	2.3	183	77	6	418	41	9	7	41	1.66
551698--551736	13	2.9	14	84	7	53	38	0	0	61	0.96
552040--552092	17	3.1	17	76	7	54	43	0	1	54	1.11
552035--552090	22	2.6	23	86	8	73	42	0	1	55	1.10
552104--552145	21	2.0	21	86	9	59	57	0	2	40	1.12
552251--552297	17	2.8	17	80	3	51	57	0	2	40	1.11
552349--552386	19	2.1	18	85	14	51	39	2	5	52	1.38
552496--552562	29	2.3	30	84	5	91	50	1	2	44	1.26
552710--552779	15	4.6	15	77	19	65	47	1	0	51	1.09
552869--552893	9	2.8	9	100	0	50	56	0	0	44	0.99
552846--552914	13	4.8	14	78	19	79	49	0	1	49	1.09
553202--553255	21	2.5	22	84	6	65	57	1	0	40	1.09
553202--553262	31	2.0	31	83	6	79	57	1	0	40	1.08
553232--553287	24	2.5	23	77	11	62	55	0	1	42	1.10
553227--553265	14	2.9	14	88	11	64	56	0	0	43	0.99
553365--554027	181	3.7	177	78	7	542	41	8	9	41	1.68
553897--554172	146	1.9	146	87	4	405	41	7	8	42	1.63
554554--554616	21	3.5	18	76	17	51	44	1	0	53	1.10
554592--554630	17	2.3	17	86	0	51	46	2	0	51	1.14
554692--554767	41	1.9	38	84	7	98	51	2	2	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554875--554921	16	2.9	16	81	9	60	42	4	0	53	1.20
555234--555299	30	2.1	31	81	10	73	48	1	3	46	1.26
555300--555351	22	2.5	21	81	9	61	48	3	3	44	1.39
555521--555566	23	2.0	23	86	0	65	47	2	2	47	1.26
555529--555581	23	2.4	22	81	9	54	52	0	3	43	1.19
555749--555796	20	2.3	21	85	3	62	47	2	2	47	1.25
555749--555796	10	4.7	10	77	12	53	47	2	2	47	1.25
556624--556731	21	5.1	21	70	20	59	53	1	0	44	1.11
556679--556721	13	3.1	14	81	15	54	51	0	0	48	1.00
556639--556738	31	3.3	31	73	19	84	52	1	0	47	1.07
556683--556743	21	2.8	23	83	14	76	45	0	0	54	1.00
557341--557384	23	1.9	23	85	0	61	45	2	4	47	1.35
557519--557567	15	3.4	15	72	16	50	44	2	0	53	1.12
557910--558306	179	2.2	180	79	6	412	41	11	7	38	1.70
558889--558960	29	2.4	30	77	13	76	47	1	0	51	1.09
558910--559035	64	2.0	64	81	9	150	49	0	2	47	1.20
559313--559397	19	4.2	19	69	26	59	50	2	0	47	1.14
559492--559594	13	8.3	13	69	21	53	49	0	0	50	1.00
559483--559534	22	2.2	25	83	10	74	53	0	0	46	1.00
559489--559527	17	2.3	17	91	8	62	51	0	0	48	1.00
559499--559605	17	6.2	17	71	23	73	51	0	0	48	1.00
559514--559618	34	3.0	35	77	10	117	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559638--559683	20	2.5	20	82	10	62	39	6	0	54	1.26
560080--560143	11	5.9	11	75	10	51	53	0	4	42	1.22
560114--560156	23	2.0	23	86	9	63	46	2	6	44	1.43
560138--560189	13	4.0	13	73	9	52	48	1	0	50	1.12
560281--560363	28	3.0	28	80	7	71	50	1	0	48	1.08
560303--560365	28	2.2	28	83	5	74	53	1	0	44	1.10
560330--560367	18	2.1	18	85	9	51	52	0	0	47	1.00
560510--560554	20	2.2	20	84	4	54	48	0	0	51	1.00
560498--560590	18	5.1	18	72	20	77	48	0	2	49	1.13
560538--560604	18	3.8	17	80	11	64	47	1	1	49	1.19
561110--561139	15	2.0	15	100	0	60	46	0	0	53	1.00
561326--561366	19	2.1	20	86	4	57	53	2	4	39	1.35
561457--561508	19	2.7	19	80	13	63	40	0	5	53	1.25
561453--561533	13	6.2	13	72	17	60	45	0	3	50	1.19
561501--561560	18	3.0	21	83	13	65	58	3	0	38	1.15
561562--561606	22	2.0	22	83	8	56	48	2	2	46	1.26
561785--561845	7	9.3	6	76	13	50	45	0	1	52	1.10
561787--561845	20	3.0	20	80	7	66	45	0	1	52	1.10
561794--561845	7	7.7	7	81	14	56	44	0	1	53	1.11
562072--562139	13	5.4	12	71	25	52	51	0	1	47	1.09
562762--562797	18	1.9	19	88	5	56	38	2	2	55	1.29
562833--562899	27	2.3	29	85	12	86	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562760--562900	10	14.5	10	67	20	52	45	1	2	51	1.22
562842--562900	15	4.1	15	73	16	54	47	0	0	52	1.00
563014--563070	23	2.6	21	79	15	62	45	1	0	52	1.11
563150--563196	7	7.0	7	78	9	53	55	0	0	44	0.99
563136--563189	27	2.0	27	85	7	74	51	1	0	46	1.11
563154--563192	20	2.0	20	84	0	51	53	0	0	46	1.00
563339--563392	18	2.9	18	76	15	56	48	0	0	51	1.00
563808--563860	18	3.0	18	79	17	58	41	0	1	56	1.10
565100--565265	63	2.6	64	86	5	223	34	10	26	28	1.89
565100--565287	63	3.0	63	83	3	173	34	11	25	28	1.91
565714--565833	21	5.5	21	82	9	134	40	9	15	35	1.79
565712--565833	46	2.7	46	87	9	173	39	9	14	36	1.80
566332--566366	8	4.2	8	92	7	61	77	0	11	11	1.00
566332--566366	17	2.1	17	100	0	70	77	0	11	11	1.00
566901--566971	31	2.2	31	80	12	81	53	2	2	40	1.30
567145--567182	20	1.9	20	84	10	51	42	2	5	50	1.39
567725--567766	19	2.2	20	86	4	59	45	2	2	50	1.27
567928--567974	17	2.7	18	81	15	55	38	0	0	61	0.96
567962--568002	15	2.7	16	85	11	59	39	0	2	58	1.11
568627--568664	14	2.7	15	88	8	53	47	0	0	52	1.00
569042--569086	22	2.0	22	91	0	72	46	2	0	51	1.13
569042--569096	22	2.6	21	76	21	60	47	1	1	49	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569913--569970	23	2.3	23	80	19	64	62	0	0	37	0.96
569918--569959	13	3.4	12	84	12	50	61	0	0	38	0.96
569944--569983	21	2.0	21	90	9	66	55	0	0	45	0.99
569939--569980	15	2.9	15	85	3	50	57	0	0	42	0.99
570059--570131	19	3.6	20	78	12	60	39	4	1	54	1.28
570120--570158	16	2.3	18	86	8	55	46	0	2	51	1.14
570214--570281	26	2.7	25	73	11	66	41	4	7	47	1.51
570337--570387	27	1.9	26	92	4	84	47	0	3	49	1.20
570863--570902	10	3.9	11	87	12	50	52	2	0	45	1.14
570870--570912	14	3.1	14	83	10	52	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17