genome.fa.s246.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  10  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376123--378614	533	4.7	525	74	11	1669	40	8	9	41	1.68
377101--377406	152	2.0	154	83	8	394	41	7	9	41	1.66
376568--377874	695	1.9	685	83	5	1679	39	8	9	42	1.68
377255--378584	181	7.4	181	75	6	1053	40	8	9	41	1.68
386408--386452	23	2.0	23	82	8	56	40	4	0	55	1.20
386785--387124	181	1.9	176	80	7	391	39	6	10	42	1.66
387117--387152	18	2.0	18	89	10	56	38	2	2	55	1.29
387125--387600	176	2.7	179	76	10	418	42	7	10	38	1.69
386535--387987	180	8.1	178	73	10	881	40	8	10	40	1.70
387905--388079	92	1.9	92	81	0	215	43	11	12	32	1.78
387997--388618	178	3.5	178	80	6	589	41	9	9	39	1.70
387544--388433	451	2.0	450	81	5	1055	41	9	10	39	1.71
388782--389061	144	1.9	144	80	7	325	41	8	8	40	1.67
388913--389739	181	4.6	179	74	9	571	40	8	8	42	1.64
389756--390389	181	3.5	177	77	8	563	40	8	9	41	1.67
389182--390326	581	2.0	578	79	6	1267	39	7	9	43	1.65
389756--390448	182	3.9	183	75	7	612	40	8	9	41	1.68
390239--390673	225	1.9	225	81	2	525	40	10	7	41	1.68
391365--392343	181	5.5	180	76	7	832	39	8	9	42	1.68
392458--392499	21	2.0	22	85	4	59	47	0	0	52	1.00
392563--392668	20	5.3	19	67	24	58	47	2	2	47	1.31
392581--392690	33	3.4	30	72	19	80	48	1	3	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393222--393280	12	4.9	12	77	10	59	50	0	0	49	1.00
393248--393296	19	2.7	19	79	17	59	51	0	0	48	1.00
393224--393296	23	3.3	23	69	23	68	49	0	0	50	1.00
393434--393530	43	2.2	42	82	10	106	46	2	3	48	1.29
393505--393556	18	2.9	18	77	11	63	44	0	1	53	1.11
393680--394017	166	2.0	167	97	0	642	46	2	3	47	1.35
394046--394085	15	2.9	14	88	7	55	57	2	0	40	1.12
394277--394325	13	3.2	15	80	19	57	51	0	0	48	1.00
394753--394800	24	2.0	24	84	8	62	50	2	2	45	1.25
394945--395022	12	6.3	12	72	22	56	50	0	1	48	1.09
395145--395218	6	12.5	6	71	25	52	50	1	0	48	1.09
395142--395217	13	5.3	13	71	23	55	51	1	0	47	1.09
395158--395225	31	2.2	32	84	10	88	50	1	0	48	1.10
395139--395208	24	3.1	23	74	25	69	52	1	0	45	1.09
395536--395566	15	2.1	15	93	0	53	41	3	0	54	1.16
395586--395646	26	2.3	26	97	0	113	45	0	4	49	1.23
396215--396264	17	2.8	18	84	9	66	54	2	0	44	1.11
396346--396399	21	2.5	22	82	11	76	42	1	3	51	1.30
396389--396421	16	2.1	16	88	11	50	54	0	6	39	1.25
397004--397061	29	2.0	29	86	6	82	46	0	0	53	1.00
397093--397146	17	3.2	17	71	5	56	44	0	0	55	0.99
397346--397382	17	2.2	17	90	0	56	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397629--397718	38	2.4	38	78	14	96	44	1	1	53	1.15
397640--397707	12	5.7	12	71	15	52	47	0	1	51	1.09
397674--397714	21	2.0	21	90	9	66	39	0	2	58	1.11
397675--397719	20	2.2	21	81	18	60	40	0	2	57	1.11
398162--398230	20	3.5	20	79	13	63	50	0	2	46	1.16
398327--398403	28	2.6	30	73	17	72	50	3	1	44	1.28
401015--401108	15	6.3	15	72	19	54	34	1	4	60	1.23
401179--401204	12	2.2	12	100	0	52	53	23	0	23	1.46
402441--402495	22	2.4	24	82	11	62	49	3	1	45	1.30
402670--403838	179	6.5	180	77	7	954	40	8	9	41	1.68
402609--403799	360	3.3	355	78	7	1114	40	8	9	41	1.68
403856--404451	179	3.3	178	77	8	582	39	7	9	43	1.65
404628--404662	17	2.1	17	88	0	52	45	2	2	48	1.32
404744--404780	19	1.9	19	88	0	56	43	0	0	56	0.99
406883--407119	120	2.0	120	86	3	334	34	12	8	45	1.72
407009--407546	180	3.0	181	78	4	518	42	8	8	40	1.65
408518--408592	33	2.2	33	81	11	82	42	2	2	52	1.29
408919--409056	67	2.1	67	84	0	177	45	8	9	36	1.67
409129--410528	181	7.8	179	74	9	754	40	8	9	41	1.67
411233--413203	181	11.0	182	76	6	1456	40	8	9	40	1.69
413479--413533	26	2.2	25	83	9	67	29	0	5	65	1.15
413498--413545	23	2.0	25	84	8	64	33	0	6	60	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422234--422268	13	2.8	12	87	8	52	42	0	8	48	1.33
422309--422350	22	1.9	22	85	0	57	57	2	2	38	1.25
422622--422670	8	6.2	8	79	11	57	38	0	2	59	1.09
423122--423170	19	2.5	19	77	9	55	57	2	2	38	1.22
423192--423236	19	2.4	19	88	0	63	51	4	2	42	1.34
423672--423719	24	2.0	25	88	8	73	54	0	0	45	0.99
423766--423819	8	6.6	8	81	12	65	38	1	1	57	1.20
423766--423812	17	2.9	16	84	12	60	36	2	2	59	1.21
423767--423819	17	3.2	16	78	19	56	39	1	1	56	1.21
423830--423869	18	2.2	19	86	4	55	45	0	0	55	0.99
423916--423958	18	2.5	17	80	3	50	44	0	2	53	1.13
424506--424553	15	3.0	16	79	14	55	45	2	0	52	1.12
425578--425637	14	4.2	14	70	19	52	56	0	3	40	1.16
426469--426502	14	2.4	14	90	0	50	35	0	2	61	1.11
426505--426554	13	3.8	13	76	15	50	56	0	2	42	1.11
426657--426699	18	2.4	18	81	14	54	37	0	0	62	0.95
426659--426722	28	2.2	29	80	2	67	42	1	0	56	1.09
426810--426835	10	2.6	10	100	0	52	50	0	7	42	1.31
428330--428354	7	3.6	7	100	0	50	40	0	0	60	0.97
428877--428908	16	1.9	17	93	6	57	43	0	6	50	1.27
429150--429198	19	2.6	17	81	12	53	46	2	2	48	1.25
429151--429188	17	2.3	16	90	4	58	50	0	2	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429338--429379	22	1.9	22	85	0	57	54	0	2	42	1.13
429365--429478	24	4.6	24	71	14	72	50	0	0	48	1.13
429437--429479	19	2.3	19	84	8	52	53	0	0	46	1.00
429465--429534	27	2.5	26	76	21	63	47	2	2	47	1.32
429491--429532	17	2.4	18	80	7	52	52	2	2	42	1.27
429491--429577	30	2.7	32	76	18	83	52	1	4	41	1.29
429653--429710	24	2.4	23	75	16	55	48	6	3	41	1.47
429788--430824	181	5.8	179	77	8	860	40	7	9	42	1.66
430896--431346	176	2.5	178	87	6	635	42	9	7	40	1.66
432141--432620	180	2.7	178	83	4	606	40	7	9	42	1.66
432925--433074	16	8.7	19	66	29	63	46	1	2	50	1.21
433228--433252	13	1.9	13	100	0	50	48	0	0	52	1.00
433269--433899	181	3.5	178	79	6	619	43	10	7	38	1.67
433747--434093	194	1.8	191	79	5	403	44	10	7	38	1.66
434328--434371	22	2.0	22	86	0	61	45	2	0	52	1.13
434437--434505	13	5.0	14	70	21	56	52	1	1	44	1.19
434397--434515	28	4.4	27	72	19	72	54	1	0	42	1.16
434461--434536	21	3.5	21	78	21	70	50	1	0	48	1.09
434454--434541	18	5.0	18	68	21	62	51	1	0	47	1.08
434665--435151	180	2.7	180	77	5	407	40	8	10	40	1.70
435387--435448	20	3.1	19	71	19	54	51	3	0	45	1.17
435775--435823	24	2.0	26	84	8	66	59	2	2	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435800--435850	19	2.7	18	72	21	50	54	0	0	45	0.99
435804--435835	13	2.5	13	94	0	55	53	0	0	46	1.00
435989--436041	15	3.7	15	80	9	67	45	0	0	54	0.99
436086--436172	43	2.0	44	84	6	115	47	1	1	50	1.16
436146--436201	12	4.8	12	71	8	53	50	1	0	48	1.11
436147--436212	34	2.0	33	93	0	105	51	3	0	45	1.16
436113--436179	24	2.7	23	74	21	55	50	0	0	49	1.00
436355--436404	16	3.1	16	80	5	55	44	6	4	46	1.47
436480--436535	14	3.8	15	77	17	55	46	0	1	51	1.11
436496--436556	18	3.1	19	76	11	61	45	0	0	54	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17