genome.fa.s246.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641667--643154	359	4.2	355	76	7	1139	40	8	8	42	1.66
641639--643180	539	2.9	534	77	8	1231	40	8	8	42	1.66
642961--642998	20	1.9	20	84	10	51	50	5	5	39	1.48
643278--646381	362	8.6	358	70	11	1393	41	8	8	41	1.66
645193--645915	393	1.8	390	80	5	855	41	8	8	42	1.64
645562--646381	177	4.6	177	75	9	655	42	7	8	41	1.64
646385--646437	24	2.2	25	86	3	72	37	1	1	58	1.20
646440--646774	180	1.9	176	83	4	431	43	8	8	40	1.65
646922--647030	22	5.0	22	78	8	98	47	8	9	34	1.65
646942--646984	19	2.3	19	100	0	86	51	9	6	32	1.61
646974--647037	23	2.8	22	83	4	83	45	9	9	35	1.69
647081--647161	22	3.8	22	72	4	67	46	7	8	37	1.63
647168--647298	66	2.0	66	80	8	151	46	7	6	38	1.59
647219--647311	22	4.2	22	79	5	98	49	9	4	36	1.55
647472--647522	22	2.3	22	82	0	66	50	1	7	39	1.42
657092--657434	172	2.0	172	98	0	659	25	16	22	35	1.95
665462--665547	45	1.9	45	100	0	172	23	16	18	41	1.89
669405--669456	20	2.6	19	73	11	50	32	3	9	53	1.51
672277--677594	481	11.1	479	86	2	6856	31	13	16	38	1.87
672277--687863	960	16.4	959	79	8	15238	31	13	16	38	1.88
677596--680709	480	6.5	480	85	3	3987	32	13	16	37	1.88
680698--687863	480	15.0	472	76	12	5185	31	13	16	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688489--691286	475	6.0	477	79	8	2580	31	13	16	38	1.87
691289--694449	480	6.6	479	85	2	3885	30	13	16	38	1.87
691289--694449	961	3.3	955	84	2	3944	30	13	16	38	1.87
694407--694706	137	2.2	137	100	0	600	27	11	16	45	1.81
694704--698710	480	8.4	481	82	3	4439	31	13	16	38	1.87
699687--701690	480	4.2	480	85	3	2657	38	16	13	31	1.87
698762--701690	957	3.1	953	84	5	3756	38	16	12	31	1.87
701423--701956	266	2.0	266	85	1	730	38	17	12	30	1.87
702096--709537	480	15.5	480	85	2	9518	38	16	13	31	1.87
701689--709537	959	8.2	959	85	2	9876	38	16	13	31	1.87
710772--710814	22	2.0	22	85	0	59	53	13	11	20	1.71
716577--716662	45	1.9	45	100	0	172	41	18	16	23	1.89
734284--734444	22	7.2	22	69	8	65	39	9	6	44	1.63
734655--734739	22	3.9	22	78	6	91	35	4	9	50	1.56
736043--736075	18	1.9	17	88	11	50	39	6	6	48	1.53
735590--738688	181	17.3	176	69	14	1004	41	8	8	41	1.65
736449--736794	179	1.9	181	84	5	461	43	7	7	41	1.61
736666--736953	159	1.8	157	83	4	382	40	6	9	43	1.63
736477--737093	338	1.8	338	80	4	735	42	6	8	42	1.61
736955--737290	180	1.9	180	79	8	380	44	8	9	37	1.69
736823--738669	358	5.2	352	75	9	1072	41	8	8	41	1.65
737318--738688	181	7.6	179	76	7	1075	41	8	7	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736444--738275	539	3.5	519	77	8	1386	41	8	8	41	1.66
736795--740978	540	7.9	533	71	12	1888	41	8	8	41	1.65
739222--739565	182	1.9	182	82	5	430	43	10	7	39	1.66
738731--740978	181	12.6	178	75	8	1450	41	8	8	41	1.65
738695--740930	353	6.3	350	74	10	1270	41	8	8	41	1.65
741040--741320	145	1.9	146	81	2	341	43	8	6	42	1.60
741194--741658	185	2.5	180	77	9	467	42	10	6	39	1.67
741941--741998	21	2.7	22	86	2	82	43	1	0	55	1.10
743621--743662	13	3.2	13	89	0	57	47	0	0	52	1.00
743768--743806	6	6.7	6	82	5	53	46	2	2	48	1.29
743767--743806	17	2.3	17	86	4	53	45	2	2	50	1.28
745183--745259	22	3.6	22	72	19	65	45	1	1	51	1.17
746463--746508	16	2.7	17	86	10	67	50	4	0	45	1.21
746682--746714	13	2.4	14	90	5	50	48	6	0	45	1.27
746812--746869	21	2.7	23	86	10	86	51	0	1	46	1.11
746920--746958	6	6.7	6	82	5	53	46	2	2	48	1.29
746919--746958	17	2.3	17	86	4	53	45	2	2	50	1.28
748831--748887	14	4.5	13	81	18	75	52	0	0	47	1.00
748842--748905	24	2.6	24	85	7	76	53	0	0	46	1.00
749258--749384	16	7.5	16	68	24	50	50	0	0	48	1.06
749275--749378	31	3.3	31	73	22	83	50	0	0	49	1.07
749552--749615	18	3.7	18	72	18	55	56	0	1	42	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749721--749772	18	2.9	18	82	5	61	46	1	0	51	1.12
750265--750344	21	3.6	21	74	14	63	53	2	2	41	1.27
750954--750979	7	3.7	7	100	0	52	46	11	0	42	1.40
751237--751302	25	2.7	26	76	9	75	57	0	1	40	1.08
751375--751418	23	1.9	23	86	9	63	54	2	2	40	1.25
751478--751520	22	2.0	20	83	16	52	53	4	0	41	1.21
751503--751595	29	3.4	28	68	27	74	49	3	2	45	1.30
751580--751646	22	2.9	23	71	20	59	53	1	1	43	1.19
751586--751657	23	3.1	22	70	23	60	52	2	2	41	1.30
751985--752039	25	2.2	25	87	6	76	49	0	0	50	1.00
751988--752026	16	2.5	15	83	4	51	46	0	0	53	1.00
751985--752055	27	2.7	26	81	12	74	47	1	0	50	1.09
751988--752066	15	5.4	15	67	19	51	46	1	0	51	1.08
752611--752660	26	1.9	26	84	8	66	48	0	4	48	1.20
752818--752864	19	2.6	18	83	12	60	48	0	2	48	1.13
752800--752867	30	2.3	31	80	12	79	48	0	1	50	1.10
752847--752896	14	3.5	15	81	5	52	52	4	0	44	1.20
752935--752987	17	3.1	17	79	15	65	50	0	1	47	1.12
753168--753238	29	2.4	28	80	15	72	36	2	1	59	1.21
753254--753303	24	2.0	25	84	3	66	50	2	0	48	1.12
753324--753384	21	2.9	22	77	20	60	52	0	1	45	1.10
753425--753458	15	2.2	16	89	5	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753476--753505	15	2.0	15	93	0	51	43	0	0	56	0.99
753619--753664	23	2.0	23	83	8	58	45	2	6	45	1.41
754762--754821	26	2.3	27	80	8	70	50	0	1	48	1.11
756561--756598	19	2.0	20	89	5	60	50	5	0	44	1.24
756587--756653	16	4.1	17	69	19	52	46	1	1	50	1.19
756655--756697	20	2.2	20	83	8	52	51	0	2	46	1.13
756817--756877	26	2.5	24	84	15	72	52	0	0	47	1.00
757842--757883	15	2.8	16	82	7	52	50	0	4	45	1.23
758328--758915	180	3.3	179	77	5	564	40	8	10	40	1.69
758564--759259	346	2.0	345	80	5	785	38	7	11	43	1.68
760197--760240	12	3.6	12	78	3	52	56	4	4	34	1.40
760369--760432	11	5.6	11	81	7	74	40	1	1	56	1.18
760369--760433	23	2.8	23	92	0	103	41	1	1	55	1.18
760583--760649	23	3.2	22	78	16	79	46	0	1	52	1.09
760597--760647	16	3.1	16	75	24	52	41	0	1	56	1.10
760548--760648	19	5.5	19	70	22	81	45	0	0	52	1.14
760584--760673	23	4.0	24	70	23	63	46	0	2	51	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!