genome.fa.s246.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  9  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326073--326203	29	4.5	29	69	19	76	48	0	1	48	1.16
326056--326161	45	2.3	45	80	16	121	47	0	2	50	1.16
327941--327993	10	5.2	10	78	17	56	49	0	0	50	1.00
328744--328791	9	5.0	9	85	10	60	43	0	2	54	1.12
329047--329577	177	2.9	180	79	6	536	39	7	9	43	1.66
330184--330227	15	2.8	16	80	19	56	56	0	4	38	1.20
330182--330230	23	2.2	22	82	10	55	55	0	4	40	1.19
330514--330552	18	2.2	17	86	4	51	48	0	2	48	1.15
330631--330746	37	3.1	38	82	14	118	46	0	0	52	1.06
330688--330732	23	1.9	24	86	4	65	48	0	0	51	1.00
331307--331377	11	6.5	11	70	15	58	50	4	1	43	1.30
331330--331386	17	3.4	16	78	9	51	54	1	0	43	1.10
331330--331414	33	2.6	34	82	14	99	51	3	0	44	1.18
331775--331807	14	2.3	15	89	5	50	54	0	3	42	1.15
331990--332032	17	2.5	17	80	3	50	53	0	2	44	1.13
332029--332109	12	6.5	12	69	18	58	41	1	1	55	1.15
332077--332115	12	3.2	12	85	7	53	41	0	0	58	0.98
332192--332261	31	2.2	30	80	14	79	44	0	2	52	1.15
332618--333327	181	3.9	181	78	4	623	40	8	8	41	1.66
333359--334106	177	4.2	175	73	6	524	41	9	8	39	1.69
334810--336813	181	11.2	179	76	8	1372	41	9	8	40	1.68
336944--336988	22	2.0	22	83	8	56	40	4	2	53	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337371--337433	27	2.3	26	83	5	72	49	3	3	44	1.34
337408--337442	16	2.3	15	90	5	52	54	2	5	37	1.39
337547--337603	14	4.0	14	78	13	55	49	0	1	49	1.11
337938--337976	19	2.1	19	85	0	51	41	5	5	48	1.47
338147--338193	16	2.9	16	84	6	60	48	0	4	46	1.21
338179--338239	26	2.6	23	80	14	70	45	1	0	52	1.10
338200--338249	19	2.8	17	84	9	64	44	2	0	54	1.11
338185--338279	10	10.0	10	75	13	69	49	2	0	48	1.13
338934--338983	14	3.7	13	83	5	55	50	2	0	48	1.12
338931--338975	20	2.2	21	80	11	58	48	0	0	51	1.00
339113--339158	17	2.7	16	83	12	56	43	2	2	52	1.25
339384--339432	14	3.3	14	76	15	53	51	2	0	46	1.12
339378--339520	78	1.9	74	82	10	173	48	2	1	47	1.25
339483--339540	22	2.5	23	83	16	75	48	1	3	46	1.29
339674--339714	19	2.0	19	86	13	55	41	0	0	58	0.98
339675--339727	19	2.8	18	75	11	52	43	0	0	56	0.99
339890--339962	26	2.8	26	83	10	87	41	1	4	53	1.28
340536--340575	15	2.9	14	88	7	55	57	2	0	40	1.12
341334--341407	23	3.3	23	80	9	75	40	2	2	54	1.29
341615--341700	20	4.4	19	76	13	77	50	1	1	47	1.16
341604--341726	41	3.0	41	77	11	101	48	2	0	47	1.20
342120--342157	18	2.1	18	90	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342331--342380	20	2.5	20	83	0	55	48	0	2	50	1.12
342342--342393	15	3.5	15	76	2	52	46	0	0	53	1.00
342387--342436	14	3.6	14	76	15	50	50	0	0	50	1.00
342341--342442	19	5.7	19	68	23	62	48	0	0	51	1.00
342623--342662	17	2.4	16	84	12	53	45	0	2	52	1.14
343405--343443	19	2.0	20	85	5	53	53	0	0	46	1.00
344119--344174	19	3.1	18	79	20	64	51	1	0	46	1.11
344123--344170	19	2.5	20	83	16	66	54	2	0	43	1.12
344165--344208	19	2.3	19	80	7	54	54	4	0	40	1.21
344269--344301	18	1.9	18	88	11	52	42	3	3	51	1.32
344290--344328	14	2.9	14	88	3	53	53	0	2	43	1.14
345662--345692	10	2.9	11	90	9	55	19	6	0	74	1.03
346630--347269	181	3.6	181	77	4	528	42	10	7	40	1.67
347760--347798	19	2.1	19	85	9	53	48	2	2	46	1.29
347815--347899	29	2.9	30	75	10	77	48	5	0	45	1.26
347834--347911	29	2.7	29	75	11	79	48	6	0	44	1.28
348112--348164	24	2.2	25	80	13	65	54	0	3	41	1.18
348251--348280	14	2.1	14	93	0	51	53	0	0	46	1.00
348269--348348	23	3.4	23	72	10	72	37	2	2	57	1.26
348452--348516	35	1.9	33	84	6	85	49	1	4	44	1.32
348560--348595	10	3.5	10	88	3	54	52	2	0	44	1.15
348591--348645	21	2.6	21	77	16	60	43	1	7	47	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348736--348845	24	4.6	25	69	22	67	48	1	0	49	1.18
349111--349165	15	3.7	15	73	20	53	43	3	0	52	1.18
350211--350284	36	2.1	36	94	0	130	39	4	6	50	1.48
350568--350601	18	1.9	17	88	5	50	35	2	2	58	1.28
350376--351635	180	7.1	180	79	5	1159	40	8	10	41	1.69
350376--351635	359	3.5	354	79	6	1194	40	8	10	41	1.69
351638--352278	181	3.5	180	79	4	673	42	9	9	38	1.71
352300--355045	181	15.2	180	74	7	1876	40	10	8	40	1.69
352295--355030	542	5.0	534	75	7	1657	41	10	8	40	1.69
354648--354692	19	2.4	19	88	0	63	37	13	6	42	1.70
355444--355485	17	2.4	18	84	8	59	61	2	0	35	1.09
355780--355829	14	3.2	16	81	18	61	46	2	0	52	1.12
355956--356022	26	2.5	26	76	9	73	37	1	2	58	1.23
355957--356024	27	2.4	29	73	11	70	36	1	2	58	1.22
356705--356737	18	1.9	17	88	11	50	48	6	9	36	1.60
356539--357167	181	3.5	179	81	3	701	39	8	10	42	1.69
357171--357209	14	2.7	15	84	7	55	53	0	0	46	1.00
358827--358876	10	4.9	10	80	9	57	56	0	2	42	1.11
359005--359068	24	2.8	24	84	13	73	46	0	0	53	1.00
359150--359218	18	3.7	18	72	14	59	49	4	0	46	1.21
359116--359183	30	2.3	30	80	14	79	47	2	0	50	1.16
360543--360591	24	2.0	26	88	8	75	20	18	8	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360822--360870	24	2.0	24	84	7	64	18	14	10	57	1.65
360509--361053	279	2.0	279	94	0	966	28	15	11	44	1.82
361545--361609	31	2.1	31	85	5	87	52	4	0	43	1.22
362615--362673	22	2.7	24	82	15	74	52	1	0	45	1.10
362649--362702	20	2.7	20	80	5	56	55	0	0	44	0.99
362778--362802	13	1.9	13	100	0	50	40	8	0	52	1.31
363330--363359	14	2.1	14	93	0	51	50	0	3	46	1.18
363697--363735	19	2.1	19	85	9	53	53	0	0	46	1.00
363896--363933	20	2.0	20	85	15	53	47	0	5	47	1.24
363983--364015	17	1.9	17	93	0	57	48	0	3	48	1.17
363858--364018	23	7.6	20	66	23	55	47	2	2	47	1.29
364981--365031	13	4.1	12	82	9	57	54	0	0	45	0.99
367068--367625	180	3.1	175	75	9	498	41	8	8	41	1.64
368319--369442	181	6.3	180	77	7	945	40	8	10	41	1.69
368319--369442	360	3.1	356	79	6	1139	40	8	10	41	1.69
370357--370397	8	5.4	8	85	11	59	43	0	0	56	0.99
370499--370582	38	2.2	40	79	16	97	41	0	2	55	1.12
370553--370600	25	1.9	25	86	0	69	47	2	0	50	1.12
371544--371640	23	4.3	22	74	19	85	48	3	1	47	1.24
371585--371652	32	2.1	32	84	10	86	45	0	1	52	1.09
372480--372713	120	2.0	120	87	3	346	34	12	8	44	1.73
372609--372959	181	1.9	180	86	1	488	44	7	5	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373190--373266	11	7.2	11	71	14	54	44	1	3	50	1.28
373882--373956	33	2.2	33	81	11	82	42	2	2	52	1.29
374122--374167	22	2.1	22	84	8	58	56	10	2	30	1.46
374553--375886	359	3.7	361	76	7	823	40	8	9	41	1.68
374379--375891	180	8.5	179	75	7	1023	40	8	9	41	1.68
375889--375945	11	4.6	13	70	18	50	50	3	1	43	1.29
375926--375965	21	1.9	21	89	0	62	50	5	0	45	1.23
376346--376398	27	1.9	28	88	3	81	47	7	5	39	1.56
376120--377254	181	6.3	177	74	9	733	40	8	9	41	1.68
376156--377178	352	2.9	351	77	8	955	39	8	9	43	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17