genome.fa.s246.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  5  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180395--180453	8	7.4	8	73	21	52	52	0	1	45	1.10
180424--180474	17	3.1	17	84	15	63	54	0	1	43	1.11
180829--182121	473	2.7	474	87	3	1780	41	17	9	31	1.82
182157--183559	497	2.8	495	86	3	1928	42	17	9	30	1.81
184106--184184	13	5.7	13	69	19	61	44	6	2	46	1.42
184366--184423	22	2.6	21	76	18	55	48	1	1	48	1.22
184391--184425	13	2.6	13	90	4	52	51	0	0	48	1.00
184374--184413	18	2.1	18	86	9	53	50	0	2	47	1.14
184540--184615	23	3.5	23	80	15	74	47	1	0	51	1.09
184540--184598	19	3.0	20	85	12	77	47	1	0	50	1.11
184560--184624	25	2.5	26	85	9	89	47	0	0	52	1.00
184545--184627	24	3.5	22	82	14	87	45	1	0	53	1.08
184784--184839	14	3.8	15	77	17	55	46	0	1	51	1.11
184800--184860	18	3.1	19	76	11	61	45	0	0	54	1.00
185220--185264	22	2.0	22	87	8	65	40	2	2	55	1.24
185269--185321	17	3.1	18	76	17	60	54	0	0	45	0.99
185279--185318	13	3.2	13	86	13	57	52	0	0	47	1.00
185538--185604	23	2.9	24	81	16	72	52	0	1	46	1.09
185635--185697	27	2.3	26	83	5	72	49	3	3	44	1.34
185672--185706	16	2.3	15	90	5	52	54	2	5	37	1.39
185761--185810	14	3.5	15	83	8	68	54	0	0	46	1.00
185912--186091	90	2.0	88	82	6	220	38	5	6	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186348--186394	18	2.6	19	76	6	53	53	0	2	44	1.12
186360--186467	22	5.2	21	71	21	68	49	0	2	47	1.22
186655--186682	14	2.0	14	100	0	56	35	7	14	42	1.73
186931--186977	16	3.1	15	79	17	53	51	4	0	44	1.21
187268--187323	26	2.2	25	78	9	60	42	3	3	50	1.37
187597--187658	18	3.0	21	71	20	60	48	0	0	51	1.00
187704--187747	17	2.4	19	85	11	65	50	0	0	50	1.00
187695--187773	25	3.3	25	78	15	78	45	1	0	53	1.08
188137--188202	19	3.6	17	74	25	55	50	3	1	45	1.26
188153--188214	17	3.4	18	77	20	67	46	1	1	50	1.20
188282--188342	27	2.2	29	80	11	74	50	0	0	49	1.00
188957--189003	18	2.6	18	77	12	51	38	0	0	61	0.96
189787--189846	31	2.0	30	84	15	79	40	0	1	58	1.08
189888--189953	27	2.5	28	83	9	77	43	3	0	53	1.16
190007--190046	12	3.2	12	86	6	53	52	7	0	40	1.30
190014--190038	13	1.9	13	100	0	50	48	8	0	44	1.32
190614--190679	14	5.0	14	70	17	52	50	0	1	48	1.10
190751--190826	19	3.8	19	74	16	73	51	0	0	48	1.00
190782--190806	13	1.9	13	100	0	50	48	0	0	52	1.00
190804--190847	16	2.8	16	76	13	54	61	0	0	38	0.96
191409--191481	30	2.4	31	79	9	78	46	2	1	49	1.24
191626--192196	181	3.2	181	75	11	442	42	10	7	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192893--192934	14	2.9	15	82	6	52	57	2	2	38	1.25
193607--193659	19	2.9	18	80	8	54	45	3	1	49	1.31
193647--193687	21	2.0	21	90	0	64	48	0	0	51	1.00
193770--193859	14	6.3	15	75	13	75	52	1	1	45	1.15
194821--194869	8	5.8	9	77	18	52	46	0	0	53	1.00
194805--194914	34	3.2	34	72	20	86	51	0	0	46	1.13
194972--195009	15	2.6	15	87	4	51	39	0	0	60	0.97
195289--195347	8	7.4	8	73	21	52	52	0	1	45	1.10
195318--195368	17	3.1	17	84	15	63	54	0	1	43	1.11
195422--195450	14	2.1	14	93	6	51	48	0	0	51	1.00
195747--195849	28	3.3	31	75	18	81	46	1	1	49	1.24
196359--196397	20	2.0	20	85	9	55	38	7	2	51	1.44
197967--198022	19	2.8	21	74	20	57	42	1	0	55	1.10
198451--198518	35	2.0	34	82	8	84	52	2	0	44	1.16
198712--198743	14	2.4	14	94	5	57	50	0	0	50	1.00
199295--199335	17	2.4	18	80	12	50	53	2	0	43	1.13
199534--199593	30	2.0	30	81	9	70	51	1	3	43	1.28
199925--199970	21	2.0	21	88	12	65	52	0	0	47	1.00
200037--200072	15	2.4	15	85	0	54	44	0	2	52	1.15
200084--200124	20	2.0	20	86	9	57	56	0	2	41	1.13
200118--200171	24	2.2	24	78	12	58	55	0	1	42	1.10
200162--200218	24	2.3	25	77	14	64	50	1	3	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200697--200871	92	1.9	92	83	0	224	44	10	11	33	1.76
201404--201438	16	2.2	16	89	0	52	42	5	2	48	1.41
201506--201588	4	21.2	4	67	18	50	51	0	2	45	1.14
201506--201587	20	4.4	20	72	20	70	52	0	2	45	1.14
201507--201572	34	1.9	35	84	3	89	53	0	3	43	1.16
201774--201830	22	2.4	25	83	11	68	50	0	1	47	1.11
201871--201938	26	2.6	27	77	13	70	41	0	2	55	1.15
201940--201986	18	2.4	20	72	17	53	46	2	8	42	1.46
202177--202216	21	1.9	21	89	0	62	40	5	2	52	1.37
202346--202383	16	2.3	17	82	17	53	47	0	0	52	1.00
202437--202484	14	3.5	14	75	13	55	52	0	0	47	1.00
202438--202486	22	2.2	22	78	7	55	51	0	0	48	1.00
203019--203136	19	6.3	19	67	24	72	48	0	1	50	1.11
203023--203067	12	3.6	12	84	6	54	51	0	2	46	1.13
203070--203123	18	2.9	18	73	10	56	44	0	0	55	0.99
203354--203387	14	2.4	14	90	5	50	58	0	0	41	0.98
203575--203638	22	3.0	21	76	15	69	48	0	0	51	1.00
203921--203988	32	2.2	30	79	12	75	51	2	1	44	1.25
204199--204245	21	2.2	21	85	7	60	53	4	2	40	1.32
204216--204245	16	1.9	15	93	6	51	50	3	0	46	1.18
204483--204538	26	2.2	26	87	6	78	55	0	0	44	0.99
204473--204585	11	10.2	11	72	19	76	52	0	0	46	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204485--204546	20	3.1	20	82	17	76	54	0	0	45	0.99
204522--204580	23	2.6	23	71	15	59	50	1	0	47	1.11
204479--204603	15	8.1	15	69	19	53	52	0	0	46	1.12
204512--204666	84	1.9	84	80	12	187	48	1	1	48	1.20
204407--204679	20	13.6	20	65	25	73	47	1	1	49	1.19
204505--204679	18	10.0	18	65	26	67	47	1	1	49	1.19
205067--205149	33	2.5	34	77	14	86	50	1	1	46	1.16
205067--205140	25	2.9	26	73	15	66	52	1	1	44	1.17
205113--205186	21	3.4	21	72	10	60	55	0	0	44	0.99
205866--205895	12	2.6	12	94	5	53	53	0	0	46	1.00
205951--205976	10	2.6	10	100	0	52	30	7	0	61	1.24
206096--206128	16	2.1	15	94	5	57	60	0	6	33	1.21
206151--206196	24	1.9	24	82	8	58	39	4	2	54	1.32
206465--206631	91	1.8	91	87	1	246	39	4	4	51	1.42
207309--207369	17	3.4	18	77	18	65	40	1	1	55	1.19
207565--207598	11	3.3	11	88	12	54	55	0	0	44	0.99
207563--207625	28	2.3	27	79	15	67	52	0	1	46	1.10
207568--207640	38	1.9	37	84	13	96	52	0	1	46	1.09
207726--208173	181	2.5	177	78	5	465	40	10	9	39	1.72
208247--208658	177	2.3	178	79	5	420	40	10	6	42	1.65
208709--208773	31	2.1	31	85	5	87	38	3	1	56	1.24
208750--208789	19	2.1	19	86	9	55	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208804--208858	15	3.9	15	76	11	53	45	0	1	52	1.11
209153--209224	29	2.5	30	77	9	85	45	2	2	48	1.31
209354--209398	19	2.4	19	79	17	58	55	0	4	40	1.20
209418--209463	22	2.1	22	84	8	58	50	0	2	47	1.13
209389--209456	17	4.1	16	75	19	59	48	1	1	48	1.19
209749--211326	180	8.9	181	73	10	1096	40	11	8	39	1.70
209761--211241	717	2.1	717	87	2	2098	41	11	8	39	1.70
211560--211597	19	2.1	19	85	14	53	42	0	5	52	1.24
211825--211857	6	5.5	6	96	0	57	51	0	3	45	1.16
212044--212092	16	2.8	17	85	14	57	48	2	0	48	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17