genome.fa.s246.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  8  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296187--296226	21	2.0	20	85	14	55	50	0	2	47	1.14
296296--296326	15	2.1	15	94	5	55	67	0	0	32	0.91
296359--296436	21	3.9	19	77	14	70	46	1	1	51	1.17
296548--296576	15	1.9	15	100	0	58	55	3	0	41	1.17
296655--296698	15	3.0	15	76	3	54	47	2	0	50	1.13
296986--297020	16	2.2	16	94	0	61	45	2	0	51	1.16
297070--297110	20	2.0	22	90	9	68	51	2	0	46	1.14
297498--297554	25	2.2	25	81	9	71	52	1	0	45	1.11
297574--297619	17	2.6	18	80	16	60	41	0	2	56	1.11
297920--298065	39	3.8	37	67	26	83	52	2	0	44	1.20
297994--298152	62	2.6	58	78	12	167	49	0	0	49	1.05
298014--298138	51	2.4	52	78	14	141	50	0	0	49	1.00
298068--298116	21	2.4	20	83	12	64	42	0	0	57	0.99
298216--298279	31	2.1	31	82	8	78	46	3	3	46	1.34
298588--298689	11	9.0	12	67	21	51	51	1	1	44	1.23
298635--298717	16	5.2	16	75	17	59	53	0	1	45	1.08
298613--298691	17	4.4	20	71	20	59	54	1	1	43	1.16
298689--298731	18	2.3	20	80	15	56	46	0	0	53	1.00
298679--298753	25	3.0	24	75	14	64	50	1	0	48	1.09
298722--298776	19	3.0	19	75	22	55	47	3	1	47	1.30
300072--300103	14	2.4	14	94	5	57	50	0	0	50	1.00
300164--300209	16	2.8	16	80	6	56	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300297--300345	22	2.2	23	85	3	64	51	0	2	46	1.12
300449--300487	15	2.8	13	82	14	51	48	0	5	46	1.24
300615--300658	14	3.1	14	81	12	54	54	0	0	45	0.99
300615--300672	29	2.0	28	83	9	73	48	0	0	51	1.00
300903--300956	23	2.5	21	82	11	72	48	1	0	50	1.11
301143--301208	19	3.7	18	78	15	57	45	0	1	53	1.09
301166--301260	30	3.2	30	70	19	74	49	2	1	47	1.20
301158--301211	18	3.1	16	80	20	56	48	0	0	51	1.00
301406--301985	180	3.2	178	77	8	532	39	9	9	41	1.71
302090--302141	15	3.5	15	73	19	54	50	1	0	48	1.12
302377--302408	16	2.1	15	94	5	55	43	0	0	56	0.99
302477--302533	18	3.2	17	78	14	62	52	1	0	45	1.11
302451--302563	35	3.3	34	78	14	85	51	3	0	44	1.25
303728--303760	18	1.9	17	88	11	50	42	6	3	48	1.43
304278--304326	12	4.1	12	86	7	64	48	6	2	42	1.39
304736--304781	22	2.1	23	92	8	78	45	4	0	50	1.21
304774--304811	19	2.0	20	85	15	53	55	2	5	36	1.37
304845--304931	22	4.3	20	73	25	69	48	0	1	50	1.08
304874--304931	16	3.7	17	80	15	63	50	0	0	50	1.00
305296--305350	20	2.6	21	77	16	60	41	9	3	45	1.53
305508--305562	12	4.4	12	76	17	58	47	0	0	52	1.00
305548--305600	17	3.1	17	76	7	54	43	0	1	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305613--305689	31	2.5	32	78	16	81	51	0	1	46	1.09
306480--306513	13	2.5	13	90	4	50	50	0	2	47	1.16
307464--307506	18	2.4	18	84	7	52	48	2	0	48	1.14
307888--307953	21	3.2	21	75	12	57	54	1	0	43	1.09
307894--307950	19	3.0	20	73	19	59	56	0	0	43	0.99
307895--307982	21	4.3	20	72	21	67	51	0	1	47	1.08
308228--308272	22	2.0	22	86	0	63	44	2	4	48	1.35
308252--308285	18	1.9	18	88	5	52	44	0	2	52	1.16
309093--309156	31	2.1	31	82	8	78	46	3	3	46	1.34
309157--309181	10	2.5	10	100	0	50	44	0	8	48	1.32
309271--309348	22	3.6	22	76	11	65	50	1	0	48	1.09
309271--309351	11	7.6	11	76	18	50	50	1	0	48	1.08
309298--309375	12	7.0	12	70	15	60	53	1	0	44	1.08
309282--309350	23	3.0	22	75	10	57	52	1	0	46	1.09
310032--310085	29	1.9	27	82	14	65	44	5	0	50	1.25
310275--310305	14	2.1	15	94	5	55	54	0	0	45	0.99
310473--310529	19	3.0	20	75	17	57	47	1	1	49	1.22
310773--310869	9	10.8	9	71	20	78	51	1	0	47	1.07
310744--310859	47	2.5	47	82	12	134	50	1	2	45	1.25
310773--310882	33	3.2	33	77	16	102	50	1	0	47	1.11
310784--310854	7	10.3	7	71	24	53	52	1	0	46	1.09
310946--311005	22	2.7	22	78	14	70	53	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311428--311492	19	3.3	19	72	19	69	47	0	4	47	1.22
311413--311497	41	2.1	41	100	0	170	47	0	4	48	1.23
311632--311686	14	3.7	15	78	9	60	54	0	0	45	0.99
311652--311691	13	3.2	13	86	13	57	52	0	0	47	1.00
312038--312093	11	5.6	11	76	18	52	44	1	1	51	1.22
313913--313947	17	2.1	17	88	0	52	48	0	2	48	1.16
313949--313988	20	2.0	21	85	5	55	52	0	0	47	1.00
313918--314005	46	1.9	46	82	13	110	48	1	1	48	1.16
314100--314168	20	3.4	19	78	13	68	44	0	0	55	0.99
314105--314145	21	1.9	22	90	5	66	43	0	0	56	0.99
314100--314168	10	6.7	11	71	23	53	44	0	0	55	0.99
314185--314489	163	1.9	162	81	3	378	43	9	6	40	1.62
314472--314508	19	1.9	19	94	0	65	40	5	10	43	1.63
315514--315562	19	2.7	18	75	9	55	44	2	2	51	1.24
316539--316563	12	2.1	12	100	0	50	40	0	0	60	0.97
316746--316786	19	2.2	19	86	0	55	46	0	4	48	1.23
316876--316943	16	4.2	16	80	14	77	45	0	0	54	0.99
316899--316945	3	15.0	3	82	8	58	40	0	0	59	0.97
317200--317230	15	2.0	16	93	6	55	61	0	0	38	0.96
317350--317408	11	5.1	11	76	17	57	50	0	1	47	1.11
317349--317423	25	3.0	25	86	11	100	52	0	2	45	1.15
317743--317799	25	2.2	25	81	12	62	54	1	1	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317753--317800	25	1.9	25	87	8	71	52	2	0	45	1.12
318248--318303	25	2.3	23	79	11	58	48	0	3	48	1.19
318266--318313	16	3.0	15	88	11	69	50	0	2	47	1.12
318266--318324	16	3.7	16	82	13	50	50	1	1	45	1.21
318938--318974	17	2.2	17	100	0	74	56	5	0	37	1.22
318942--318982	17	2.4	17	91	0	64	53	4	0	41	1.22
321319--321358	19	2.2	18	90	4	62	45	0	2	52	1.14
321476--321528	27	2.0	27	81	7	63	49	0	0	50	1.00
321913--321965	27	2.0	29	82	14	69	39	1	1	56	1.21
322001--322040	19	2.2	18	86	13	55	55	0	0	45	0.99
321974--322066	50	1.9	47	81	14	109	50	3	1	45	1.25
322366--322412	16	2.7	18	78	18	55	42	4	2	51	1.33
322362--322399	16	2.5	15	91	4	58	47	5	0	47	1.24
322371--322422	18	3.0	17	75	10	52	46	1	1	50	1.23
322584--322633	18	2.7	18	84	9	57	42	0	2	56	1.11
322534--322629	16	6.1	16	67	24	53	46	3	2	47	1.29
322874--322923	18	2.8	18	80	11	59	52	2	0	46	1.12
323248--323351	22	4.7	22	63	13	52	47	2	3	46	1.35
323360--323431	20	3.3	21	72	16	65	43	1	0	55	1.08
323724--323810	16	5.7	15	70	18	54	44	2	5	47	1.39
323752--323855	18	6.2	16	70	17	61	46	1	4	47	1.35
323791--323852	18	3.5	17	78	6	70	46	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324202--324232	16	1.9	16	93	0	53	45	0	3	51	1.17
325104--325168	15	4.3	15	74	16	62	44	0	3	52	1.16
325103--325174	24	3.1	24	70	23	64	45	0	2	51	1.15
325134--325186	24	2.2	24	77	12	56	49	0	0	50	1.00
325560--325601	22	2.0	21	86	13	59	40	0	0	59	0.97
325618--325690	21	3.5	20	76	14	67	50	0	1	47	1.09
325661--325715	15	3.6	15	75	20	51	54	0	1	43	1.10
325668--325715	14	3.1	16	76	14	55	56	0	2	41	1.11
325666--325710	16	2.9	16	77	16	58	53	0	2	44	1.13
326062--326207	18	8.8	16	68	22	72	48	0	2	48	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17