genome.fa.s246.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  15  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570889--570921	17	1.9	17	88	11	50	60	0	0	39	0.97
571228--571279	24	2.2	24	89	6	79	36	7	3	51	1.49
571617--571657	19	2.1	20	86	4	57	41	0	2	56	1.13
571642--571677	14	2.7	13	91	8	63	47	0	2	50	1.15
572515--572568	22	2.4	22	87	3	81	50	1	1	46	1.23
573325--573353	3	9.7	3	100	0	58	65	0	0	34	0.93
575750--575796	21	2.2	22	84	3	60	51	4	4	40	1.41
575924--576931	181	5.6	180	75	8	739	39	8	9	42	1.69
577337--577366	13	2.2	14	94	5	53	46	0	3	50	1.18
577746--577791	21	2.2	20	84	3	56	50	0	2	47	1.13
577795--577833	15	2.4	17	83	8	55	56	2	2	38	1.27
577988--578033	25	1.9	23	86	8	65	52	2	0	45	1.13
578300--578367	19	3.1	21	73	22	61	42	0	7	50	1.30
578685--578734	21	2.4	22	83	12	61	46	0	0	54	1.00
578702--578743	15	3.1	13	83	16	50	50	0	0	50	1.00
578687--578729	17	2.6	17	85	3	52	44	0	0	55	0.99
578823--578863	15	2.6	16	84	3	57	48	0	2	48	1.14
579590--579663	38	1.9	39	83	2	96	52	9	2	35	1.48
579718--579759	21	2.0	21	81	9	50	54	0	0	45	0.99
581349--581413	4	15.8	4	73	17	53	46	1	1	50	1.20
581349--581422	26	2.7	27	77	12	71	44	1	2	51	1.24
581357--581399	15	2.6	16	85	10	52	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581709--581762	25	2.2	25	87	12	76	55	0	0	44	0.99
581729--581766	16	2.5	15	91	4	58	55	0	0	44	0.99
581729--581773	16	2.9	15	80	9	54	53	0	2	44	1.13
581819--582019	42	5.0	43	73	18	186	54	0	0	44	1.07
581882--582030	26	6.3	24	71	18	91	55	0	0	44	1.04
581884--582029	7	21.4	7	69	15	76	54	0	0	44	1.04
582030--582566	182	3.0	179	80	7	577	40	7	9	42	1.65
583111--583193	33	2.5	35	79	15	95	46	2	3	46	1.33
583532--583596	30	2.1	32	85	8	89	49	0	1	49	1.10
584201--584229	14	2.0	15	93	6	51	44	6	0	48	1.29
584263--584316	14	3.9	14	79	16	58	38	7	1	51	1.41
584575--584619	16	2.7	18	83	13	60	48	0	2	48	1.13
584603--584674	28	2.4	31	80	15	80	47	2	2	47	1.31
584870--584920	24	2.1	25	85	3	68	43	1	0	54	1.11
585034--585107	23	3.2	22	80	14	78	56	0	1	41	1.07
585054--585094	19	2.2	19	91	8	66	60	0	0	39	0.96
585034--585121	27	3.3	27	80	13	85	54	1	1	43	1.15
585443--585516	25	2.8	26	78	12	71	47	2	2	47	1.30
586230--586272	16	2.8	16	80	16	54	48	0	2	48	1.14
586738--586805	34	1.9	36	88	5	104	44	0	1	54	1.09
586823--586880	24	2.4	25	91	2	91	62	0	0	37	0.96
586822--586879	21	2.7	21	89	2	89	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586958--586987	15	2.0	15	93	0	51	56	0	0	43	0.99
587079--587118	21	1.9	21	85	10	55	42	2	2	52	1.28
587129--587178	15	3.3	15	74	23	50	44	2	0	54	1.11
587362--587437	28	2.5	29	81	16	84	47	3	2	46	1.35
587501--587565	31	2.1	32	74	5	62	52	1	0	46	1.10
588383--588432	18	2.9	18	75	16	52	12	8	0	80	0.92
589911--590038	21	5.9	21	74	12	105	36	14	9	39	1.78
590023--590074	25	2.1	25	88	0	77	34	7	13	44	1.72
591286--591329	15	2.8	16	79	6	54	54	0	0	45	0.99
591347--591379	9	3.5	10	92	8	52	42	0	0	57	0.98
591506--591551	23	2.0	22	84	12	58	60	2	2	34	1.21
591763--591845	36	2.3	35	80	11	89	46	1	2	49	1.22
591873--591917	20	2.4	18	82	13	63	48	0	6	44	1.29
591877--591914	20	1.9	20	94	0	67	47	0	7	44	1.32
592029--592091	24	2.6	23	78	16	65	52	1	1	44	1.20
592920--592975	19	2.9	19	84	10	69	53	1	0	44	1.11
592920--592975	18	2.9	19	81	10	69	53	1	0	44	1.11
592948--592990	22	2.0	22	85	0	59	51	4	0	44	1.22
593292--593335	11	3.7	11	77	16	52	52	0	0	47	1.00
593306--593353	16	2.9	16	81	12	62	45	0	2	52	1.12
593286--593373	25	3.5	25	78	14	85	53	1	1	44	1.15
593303--593368	18	3.9	18	74	16	61	53	0	1	45	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593399--593486	46	1.9	45	81	2	104	55	5	1	37	1.31
594974--595373	180	2.2	180	80	3	428	41	9	8	41	1.66
595555--595901	181	1.9	181	83	3	448	38	6	10	43	1.66
596168--596200	18	1.9	17	88	11	50	42	6	12	39	1.67
596063--596509	181	2.5	179	80	4	477	42	9	10	38	1.71
596816--596864	21	2.3	21	86	6	64	55	4	2	38	1.31
596857--596908	26	1.9	28	88	7	81	50	1	1	46	1.23
597154--597188	18	1.9	18	88	0	52	51	2	2	42	1.31
597317--597365	13	3.6	14	77	17	50	48	0	2	48	1.12
597422--597507	13	6.5	13	73	12	50	50	1	0	48	1.08
597461--597517	13	3.4	17	72	27	50	50	0	0	49	1.00
597512--597570	21	2.7	21	84	5	73	45	5	3	45	1.42
597553--597598	17	2.8	16	78	15	58	52	0	4	43	1.21
597661--597713	20	2.7	19	76	21	56	49	5	1	43	1.37
597825--597886	20	3.2	20	73	13	58	48	1	0	50	1.10
597846--597881	17	2.1	17	89	0	54	44	2	0	52	1.15
597960--598009	12	4.2	12	73	21	52	44	2	2	52	1.24
598060--598118	30	1.9	32	83	13	79	44	0	0	55	0.99
598083--598134	26	2.0	26	85	7	70	46	1	0	51	1.12
598045--598188	32	4.5	31	69	19	82	41	2	0	55	1.14
598139--598249	27	4.2	25	72	14	80	44	2	0	52	1.21
598120--598173	20	2.4	23	82	17	62	40	1	0	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598316--598389	16	4.6	15	71	22	53	47	2	1	48	1.24
598318--598388	34	2.0	33	82	15	81	47	2	1	47	1.25
598355--598414	27	2.2	27	82	11	70	48	3	3	45	1.35
598417--598485	36	1.9	36	82	11	88	55	1	2	40	1.24
599334--599367	17	2.1	17	88	5	52	50	2	5	41	1.42
599396--599500	17	5.9	17	69	20	65	46	0	0	52	1.07
599409--599497	13	7.3	13	72	16	50	47	1	0	51	1.08
599414--599470	21	3.0	21	77	12	52	49	0	0	50	1.00
599691--599744	12	4.2	13	77	9	58	55	0	1	42	1.10
599689--599761	21	3.8	20	70	25	59	53	0	1	45	1.09
600003--600058	25	2.2	26	79	20	66	46	1	5	46	1.36
600064--600097	15	2.3	15	89	0	50	58	2	2	35	1.28
600072--600100	15	1.9	15	100	0	58	55	3	0	41	1.17
600181--600230	22	2.2	24	85	7	68	46	6	0	48	1.27
600494--600533	11	3.7	12	81	18	52	50	0	0	50	1.00
601540--601623	12	7.2	12	70	20	63	46	0	1	52	1.08
601593--601641	14	3.7	14	79	15	52	48	0	0	51	1.00
601684--601708	10	2.5	10	100	0	50	48	8	0	44	1.32
601709--601772	31	2.1	31	82	8	78	46	3	3	46	1.34
602020--602067	17	2.8	17	96	0	87	45	14	10	29	1.78
602150--602183	16	2.1	17	88	5	52	52	0	2	44	1.16
602161--602227	20	3.3	20	73	24	61	50	0	1	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602742--602809	25	2.8	24	72	16	59	52	0	0	47	1.00
602764--602794	12	2.5	13	89	10	55	45	0	0	54	0.99
602773--602803	16	1.9	16	93	0	53	48	0	0	51	1.00
603293--603624	163	2.0	162	82	5	393	41	5	9	43	1.61
603772--603810	19	2.1	19	85	9	53	48	2	2	46	1.29
604751--604790	16	2.5	17	76	23	50	35	10	2	52	1.48
605068--605110	15	2.8	16	86	6	54	44	0	0	55	0.99
605066--605121	13	4.1	13	78	17	51	48	0	0	51	1.00
605079--605122	22	2.0	21	82	4	52	50	0	0	50	1.00
605909--605979	24	3.0	24	74	14	65	50	1	2	45	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17