genome.fa.s246.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  12  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462831--462895	30	2.2	30	83	5	78	58	1	0	40	1.07
462842--462895	16	3.4	16	80	10	58	61	0	0	38	0.96
462821--462893	19	4.1	19	73	18	66	57	1	0	41	1.07
462997--463038	19	2.3	18	80	11	50	45	0	0	54	0.99
463011--463035	13	1.9	13	100	0	50	48	0	0	52	1.00
463920--463973	26	2.1	25	83	10	65	48	0	1	50	1.11
464937--465000	21	3.0	21	70	17	60	45	6	4	43	1.50
465646--465675	12	2.6	12	94	5	53	46	0	0	53	1.00
465679--465733	26	2.1	27	83	10	78	45	0	0	54	0.99
465897--465992	28	3.1	28	75	20	77	39	2	4	54	1.32
465957--466003	21	2.2	21	84	0	58	36	0	4	59	1.17
466405--466470	23	3.0	22	74	10	64	54	0	1	43	1.09
466414--466462	20	2.4	21	83	10	66	53	0	2	44	1.12
466536--466580	13	3.6	13	77	16	51	55	0	0	44	0.99
466683--466723	13	3.2	13	83	16	59	46	4	0	48	1.23
466684--466747	13	4.8	13	76	17	53	42	3	0	54	1.16
466720--466800	7	11.6	7	70	19	53	38	0	1	60	1.05
466667--466733	25	3.0	20	71	22	53	44	4	0	50	1.22
466703--466800	35	2.8	36	75	25	102	40	0	1	58	1.05
466703--466767	27	2.4	28	82	10	80	43	0	0	56	0.99
466707--466815	9	12.4	8	73	21	51	40	0	1	57	1.09
467275--467344	13	5.4	13	75	20	58	50	1	0	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467297--467361	19	3.5	19	74	18	64	53	0	0	46	1.00
467293--467424	31	4.5	30	73	20	84	50	0	0	47	1.11
467538--467639	9	11.4	9	68	19	54	43	0	0	54	1.13
467539--467706	23	7.3	23	70	20	79	44	1	1	52	1.16
467662--467708	14	3.1	14	87	9	58	44	0	0	55	0.99
467743--467862	59	2.0	59	81	9	138	43	2	3	50	1.32
468040--468090	18	2.8	19	77	11	54	54	0	0	45	0.99
468966--469008	18	2.4	18	80	7	52	48	4	0	46	1.22
469003--469084	44	1.9	42	85	9	112	48	2	1	47	1.22
469644--472528	180	16.2	180	75	7	1749	41	9	8	40	1.69
469644--472528	361	8.1	356	74	9	1815	41	9	8	40	1.69
469644--472532	542	5.4	533	75	8	1847	41	9	8	40	1.69
471442--471472	16	1.9	16	93	0	53	35	0	6	58	1.24
472675--472737	24	2.7	22	77	18	65	44	0	4	50	1.23
472677--472736	15	3.8	16	75	18	54	46	0	5	48	1.24
472919--472962	13	3.2	13	83	6	52	45	6	0	47	1.29
472919--472971	25	2.0	28	82	10	67	45	5	1	47	1.37
473211--473248	19	2.0	20	84	5	51	63	0	0	36	0.95
473432--473475	17	2.6	17	82	3	54	59	2	0	38	1.10
473445--473486	12	3.3	13	84	15	61	57	0	0	42	0.99
473736--473820	38	2.3	36	81	16	95	48	1	2	48	1.22
474337--474398	31	2.0	31	81	12	74	43	6	0	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474616--474653	20	1.9	20	84	10	51	47	2	7	42	1.46
475066--475118	27	2.0	26	82	14	63	41	3	0	54	1.18
475102--475156	26	2.1	27	83	10	78	45	0	0	54	0.99
475320--475415	28	3.1	28	75	20	77	39	2	4	54	1.32
475380--475426	21	2.2	21	84	0	58	36	0	4	59	1.17
475688--475726	20	2.0	20	84	0	51	48	2	0	48	1.15
475708--475786	15	5.3	15	76	10	65	48	1	1	49	1.17
475854--475902	20	2.4	21	83	10	66	53	0	2	44	1.12
475976--476020	13	3.6	13	77	16	51	55	0	0	44	0.99
476123--476163	13	3.2	13	83	16	59	46	4	0	48	1.23
476124--476187	13	4.8	13	76	17	53	42	3	0	54	1.16
476160--476240	7	11.6	7	70	19	53	38	0	1	60	1.05
476107--476173	25	3.0	20	71	22	53	44	4	0	50	1.22
476143--476240	35	2.8	36	75	25	102	40	0	1	58	1.05
476143--476207	27	2.4	28	82	10	80	43	0	0	56	0.99
476147--476255	9	12.4	8	73	21	51	40	0	1	57	1.09
476715--476784	13	5.4	13	75	20	58	50	1	0	48	1.09
476737--476801	19	3.5	19	74	18	64	53	0	0	46	1.00
476715--476864	13	11.2	13	67	28	52	50	2	0	47	1.17
476986--477079	3	32.7	3	70	16	56	41	0	1	57	1.06
476979--477079	22	4.9	20	77	17	86	41	0	0	56	1.12
476986--477079	30	3.1	31	70	20	81	41	0	1	57	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477096--477142	14	3.1	14	87	9	58	44	0	0	55	0.99
477177--477296	59	2.0	59	81	9	138	43	2	3	50	1.32
477474--477524	18	2.8	19	77	11	54	54	0	0	45	0.99
478434--478515	44	1.9	42	85	9	112	48	2	1	47	1.22
479077--481962	361	8.1	356	74	9	1808	41	9	8	39	1.69
479077--481966	542	5.4	539	75	9	1631	41	9	8	40	1.69
480876--480906	16	1.9	16	93	0	53	35	0	6	58	1.24
479077--481966	180	16.2	180	75	7	1913	41	9	8	40	1.69
482109--482171	24	2.7	22	77	18	65	44	0	4	50	1.23
482111--482170	15	3.8	16	75	18	54	46	0	5	48	1.24
482150--482211	18	3.7	16	81	12	54	53	0	0	46	1.00
482157--482208	18	3.0	18	81	13	56	51	0	0	48	1.00
482354--482397	13	3.2	13	83	6	52	45	6	0	47	1.29
482354--482406	25	2.0	28	82	10	67	45	5	1	47	1.37
482719--482788	26	2.8	25	75	18	65	44	5	2	47	1.41
482861--482904	17	2.6	17	82	3	54	59	2	0	38	1.10
482874--482915	12	3.3	13	84	15	61	57	0	0	42	0.99
482874--482957	25	3.4	25	71	18	79	51	0	3	45	1.18
482882--482989	47	2.3	46	80	9	121	47	0	4	47	1.29
483111--483172	25	2.5	25	82	10	65	51	0	3	45	1.17
483157--483209	19	2.8	18	76	23	56	50	0	1	47	1.12
483159--483243	37	2.3	37	81	16	97	49	1	1	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483756--483817	31	2.0	31	81	12	74	43	6	0	50	1.28
484367--484410	21	2.0	21	86	8	61	50	0	0	50	1.00
484376--484414	11	3.7	10	83	10	51	48	0	0	51	1.00
484948--485362	214	1.9	214	91	0	670	42	9	7	40	1.66
485693--485748	29	2.0	27	82	6	67	48	0	0	51	1.00
485842--485930	3	30.0	3	72	15	69	60	2	1	35	1.16
486185--486232	19	2.7	17	82	17	62	47	4	2	45	1.33
486836--486897	11	5.5	11	73	11	54	50	1	1	46	1.20
486839--486943	33	3.5	28	75	15	70	46	1	1	49	1.23
486836--486910	12	6.4	13	71	22	51	48	2	1	48	1.24
486863--486926	15	4.5	15	75	13	55	45	1	1	51	1.20
487688--488263	305	1.9	304	78	9	638	40	6	10	42	1.66
488453--488502	25	2.0	26	84	4	66	46	4	4	46	1.40
489886--490852	181	5.4	181	76	8	757	39	8	9	42	1.68
490885--490948	28	2.5	24	73	26	60	53	0	0	46	1.00
491337--491380	20	2.1	21	84	12	56	45	2	0	52	1.13
491469--491500	13	2.4	14	85	15	50	43	0	9	46	1.35
491813--491852	18	2.3	17	86	4	53	42	2	0	55	1.13
492055--492100	25	1.9	23	86	8	65	52	2	0	45	1.13
492299--492343	18	2.4	18	81	7	54	48	0	0	51	1.00
492302--492349	25	2.0	24	84	15	64	45	0	0	54	0.99
493049--493105	27	2.1	28	87	9	82	43	3	3	49	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493097--493129	16	2.1	16	88	11	50	45	0	0	54	0.99
493091--493135	20	2.2	20	88	7	65	42	0	0	57	0.98
493215--493263	16	3.0	16	78	3	53	51	0	4	44	1.20
493292--493331	19	2.0	20	95	4	73	42	5	0	52	1.23
494496--494530	16	2.2	16	89	0	52	54	2	0	42	1.15
494566--494619	24	2.3	25	78	18	62	37	1	1	59	1.19
494800--494855	27	2.1	27	83	12	71	37	0	5	57	1.22
494883--495148	142	1.9	142	83	6	351	41	6	9	41	1.64
494991--495903	181	5.1	179	77	9	840	39	8	9	42	1.69
495954--495998	23	1.9	24	86	4	65	48	0	2	48	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17