genome.fa.s246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  761692

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  1  of  17  ( 2025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448--1385	180	5.1	179	73	11	581	42	10	8	38	1.70
1796--2324	180	2.9	180	78	2	416	41	10	7	40	1.67
2369--3722	180	7.6	176	73	12	723	40	10	8	40	1.71
3028--3070	14	3.1	14	100	0	86	27	6	13	51	1.67
3744--4082	179	1.9	179	84	3	459	43	9	7	38	1.67
3955--4236	145	1.9	145	84	3	379	41	7	9	41	1.66
4101--5163	181	5.9	173	74	10	553	41	10	7	40	1.67
13539--16014	181	13.9	178	72	12	1489	41	9	8	40	1.69
13541--16014	358	7.0	353	72	12	1193	41	9	8	40	1.69
13539--16012	532	4.6	534	74	12	1281	41	9	8	40	1.70
16188--16231	6	7.0	6	80	10	52	50	0	0	50	1.00
16179--16231	13	4.1	13	85	7	63	49	0	1	49	1.12
16159--16231	21	3.7	20	81	7	69	49	0	2	47	1.15
16188--16231	19	2.3	19	88	11	72	50	0	0	50	1.00
16188--16252	10	6.5	10	72	18	55	46	0	1	52	1.10
16311--16999	356	1.9	354	80	4	796	43	10	7	39	1.66
16305--17761	180	8.2	179	76	7	1121	41	9	8	40	1.67
16347--17623	359	3.6	361	76	8	823	42	9	8	39	1.67
18186--18260	32	2.3	31	80	13	80	53	2	2	41	1.29
18324--18354	16	1.9	16	100	0	62	29	6	6	58	1.48
19254--19761	180	2.8	180	77	1	507	40	7	9	41	1.66
19644--19881	120	2.0	120	86	3	336	44	8	13	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20698--20805	12	8.0	13	70	24	64	49	0	2	47	1.22
20710--20758	20	2.4	22	86	13	77	53	0	0	46	1.00
21732--21841	13	8.3	13	68	19	50	53	0	1	44	1.11
21739--21815	25	3.1	24	75	5	73	50	0	2	46	1.15
21767--21829	21	3.0	21	76	6	65	52	0	0	47	1.00
21786--21849	33	2.0	32	87	6	94	59	0	0	40	0.97
21964--22000	19	1.9	19	88	0	56	56	0	0	43	0.99
22265--22882	182	3.4	181	77	7	630	44	9	7	38	1.65
22903--24131	179	6.9	180	77	6	1051	41	10	7	39	1.69
24355--24446	6	15.8	6	71	17	61	46	2	0	51	1.13
24361--24453	22	4.5	21	76	14	86	45	2	0	52	1.12
24387--24465	10	7.5	10	73	14	61	45	1	0	53	1.08
25387--25727	180	1.9	180	80	1	405	42	8	7	41	1.64
25247--25886	181	3.6	178	72	8	495	42	8	7	40	1.64
26748--26788	20	2.0	20	86	13	57	58	4	0	36	1.20
27851--27902	13	4.3	12	79	13	54	46	0	0	53	1.00
28941--28995	21	2.6	23	86	11	73	43	0	1	54	1.10
28946--28997	16	3.1	16	76	15	52	44	0	1	53	1.11
29007--29031	10	2.5	10	100	0	50	40	0	0	60	0.97
30007--30071	31	2.1	31	85	5	87	43	0	4	52	1.22
30025--30072	13	3.5	13	80	8	51	47	0	2	50	1.12
30441--30484	22	2.0	22	95	0	79	31	11	13	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30767--30815	24	2.0	24	84	7	64	57	8	14	20	1.63
30798--30822	12	2.1	12	100	0	50	68	8	8	16	1.38
32424--32492	18	3.7	18	72	14	59	46	0	4	49	1.21
32762--32811	10	4.9	10	80	9	57	42	2	0	56	1.11
32803--33414	181	3.4	179	76	7	551	38	7	8	45	1.63
33433--33961	178	3.0	180	76	8	471	40	8	8	42	1.64
34198--34246	12	4.0	12	78	5	53	10	10	2	77	1.07
34200--34233	16	2.3	14	90	10	50	5	11	0	82	0.83
35471--35608	67	2.1	66	87	8	199	42	5	13	37	1.69
35740--36176	181	2.4	182	80	4	499	41	8	10	39	1.71
36411--36453	14	3.1	14	82	0	50	55	0	4	39	1.20
36466--37584	182	6.1	181	76	8	914	42	9	7	40	1.66
36898--36930	18	1.9	17	88	11	50	36	9	6	48	1.60
36479--37514	371	2.8	362	77	9	917	42	9	8	39	1.66
37634--37682	18	2.8	18	72	25	50	57	2	2	38	1.22
37617--37684	27	2.4	28	73	11	68	58	2	1	36	1.22
37619--37685	26	2.6	27	72	13	68	58	2	1	37	1.23
37812--37861	14	3.2	16	81	18	61	52	0	2	46	1.12
38150--38191	17	2.4	18	84	8	59	35	0	2	61	1.09
38943--38986	19	2.3	19	88	0	61	45	6	9	38	1.63
39237--39269	16	2.1	16	88	5	50	21	9	0	69	1.15
39130--41329	181	12.3	181	75	8	1494	40	8	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38980--41328	359	6.5	356	74	10	1483	40	8	9	41	1.68
39099--40827	710	2.4	709	77	8	1705	41	8	9	40	1.67
41717--41749	18	1.9	17	88	11	50	39	12	6	42	1.67
41765--41822	25	2.3	25	96	0	107	20	13	12	53	1.72
42128--43237	182	6.2	180	79	7	986	42	10	7	39	1.69
43333--43413	36	2.3	36	89	4	130	53	6	3	37	1.44
44467--44521	15	3.7	15	73	20	53	52	0	3	43	1.18
44803--44847	24	1.9	24	86	4	65	53	0	2	44	1.13
45013--45042	11	2.9	10	95	5	51	46	0	0	53	1.00
45092--45156	35	1.9	33	84	6	85	44	3	1	50	1.26
45163--45204	22	2.0	20	82	17	50	54	2	2	40	1.26
45269--45336	23	2.9	23	72	10	66	60	2	2	33	1.27
45330--45359	14	2.1	14	93	0	51	46	0	0	53	1.00
45472--45520	18	2.5	20	77	19	57	40	4	0	55	1.19
45768--45848	31	2.8	29	78	9	78	45	6	2	45	1.41
45799--45842	19	2.3	19	84	7	54	47	2	2	47	1.27
46320--46381	31	2.0	30	81	12	72	43	1	3	51	1.27
46153--49296	180	17.8	178	72	11	1755	39	8	10	41	1.69
46155--47730	361	4.4	359	75	7	861	40	8	9	40	1.69
48633--49280	166	3.7	171	77	9	455	38	7	10	42	1.68
48324--49243	176	5.2	174	75	11	686	39	8	10	42	1.69
49178--49463	156	1.8	156	81	5	355	41	7	12	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50192--50280	35	2.6	34	81	10	94	49	2	0	48	1.13
50157--50276	36	3.3	36	75	15	104	49	1	1	47	1.21
50221--50289	22	3.1	23	78	19	83	52	0	0	47	1.00
50229--50278	26	1.9	26	84	15	68	48	0	0	52	1.00
50241--50302	13	4.5	13	77	16	54	51	0	0	48	1.00
50258--50300	15	2.8	16	86	6	54	55	0	0	44	0.99
50400--50482	12	6.9	12	72	21	50	49	2	0	48	1.14
50388--50479	28	3.1	28	76	18	89	51	3	0	45	1.17
50390--50500	24	4.5	24	71	20	77	49	2	0	46	1.22
50778--50827	9	5.7	9	76	4	57	48	0	4	48	1.20
50904--50933	14	2.1	15	93	6	53	40	0	0	60	0.97
51153--51202	24	2.0	25	84	3	66	50	2	0	48	1.12
51374--51435	27	2.3	27	81	15	67	46	1	0	51	1.10
51889--51923	10	3.4	10	88	7	52	45	0	0	54	0.99
51886--51924	14	2.9	14	92	3	62	43	0	0	56	0.99
52044--52094	19	2.7	20	77	22	65	45	0	1	52	1.12
52040--52095	18	3.1	18	80	19	64	46	0	1	51	1.11
52769--52808	14	2.7	15	80	7	55	52	0	0	47	1.00
52773--52813	19	2.1	20	90	4	66	48	0	0	51	1.00
52832--52924	43	2.0	43	84	10	114	49	2	2	46	1.26
53532--53609	18	4.6	17	75	12	63	53	0	0	46	1.00
53557--53615	17	3.6	17	73	15	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53784--53813	12	2.4	13	94	5	53	50	0	0	50	1.00
53862--53917	20	2.8	20	80	2	67	51	1	0	46	1.11
53850--53902	15	3.6	15	76	2	54	54	0	0	45	0.99
54113--54146	17	1.9	17	88	5	50	35	0	8	55	1.31
54671--54740	11	6.5	11	72	12	56	51	1	1	45	1.18
54802--54898	15	6.1	16	67	24	53	52	2	0	45	1.12
54788--54860	31	2.5	30	76	12	71	49	1	0	49	1.09
54970--55032	30	2.1	30	85	5	83	47	3	0	49	1.17
54986--55036	26	2.0	26	85	14	70	47	0	0	52	1.00
55433--55471	19	2.1	19	85	0	51	48	5	0	46	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17