genome.fa.s119.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold119
Parameters: 2 7 7 80 10 50 1000
Length:  3173904

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  11  of  20  ( 2346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1741864--1742097	88	2.7	87	83	3	299	35	13	29	22	1.92
1742008--1742664	34	21.0	32	70	17	208	34	12	32	21	1.90
1742187--1742331	61	2.4	60	82	4	184	30	11	36	21	1.89
1742318--1742571	69	3.9	63	76	14	214	33	11	33	21	1.89
1742292--1742620	68	4.9	67	75	12	295	36	10	31	21	1.88
1742539--1742615	33	2.3	34	84	4	102	45	9	27	18	1.79
1745009--1745268	128	2.0	128	87	1	378	17	13	34	35	1.89
1752188--1752239	15	3.6	15	84	5	63	15	9	0	75	1.05
1753883--1753942	28	2.1	28	87	0	84	46	6	15	31	1.71
1754183--1754471	156	1.9	156	80	9	353	26	11	18	43	1.84
1760868--1760907	18	2.2	19	86	4	55	40	12	15	32	1.84
1761152--1761182	13	2.4	13	94	0	53	35	12	16	35	1.87
1761132--1761198	33	2.0	33	88	11	102	32	17	13	35	1.89
1761227--1761282	19	2.8	20	83	8	69	33	17	16	32	1.92
1761268--1761296	13	2.2	13	100	0	58	37	13	17	31	1.89
1761249--1761313	32	2.0	33	90	3	105	38	15	16	29	1.90
1761281--1761334	20	2.7	20	88	5	74	33	14	18	33	1.92
1761796--1761842	20	2.3	20	89	10	69	53	14	10	21	1.71
1763794--1763822	13	2.2	13	100	0	58	41	17	13	27	1.87
1767052--1767096	1	45.0	1	81	0	54	0	6	2	91	0.50
1767054--1767096	8	5.6	8	86	8	63	0	6	2	90	0.52
1767054--1767098	15	3.1	15	87	12	67	0	6	4	88	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1767054--1767096	23	1.9	22	95	4	77	0	6	2	90	0.52
1774283--1774403	52	2.3	52	94	0	215	28	17	18	35	1.93
1774283--1774423	52	2.7	52	85	4	187	29	17	19	34	1.94
1774412--1774436	13	1.9	13	100	0	50	36	16	16	32	1.90
1774476--1774533	20	3.0	20	84	2	73	46	12	10	31	1.74
1776086--1776111	13	2.0	13	100	0	52	53	7	7	30	1.57
1779489--1779555	33	2.0	33	88	11	102	34	17	11	35	1.87
1779517--1779554	20	1.9	20	94	0	67	39	18	10	31	1.85
1779509--1779534	13	2.0	13	100	0	52	38	15	15	30	1.88
1779606--1779632	13	2.1	13	100	0	54	40	14	14	29	1.86
1783097--1783142	21	2.2	20	84	3	56	41	10	15	32	1.82
1783097--1783150	20	2.6	21	85	2	65	40	11	14	33	1.82
1783218--1783273	20	2.7	20	83	10	69	30	14	12	42	1.82
1786650--1786752	48	2.1	48	85	0	143	27	9	19	43	1.82
1787283--1787476	63	3.1	63	76	12	182	29	16	13	40	1.86
1791078--1791103	13	2.0	13	100	0	52	30	15	15	38	1.88
1793713--1793763	15	3.4	15	76	7	50	49	21	9	19	1.77
1794043--1794080	20	1.9	20	100	0	76	10	21	7	60	1.54
1800554--1800612	17	3.6	16	84	15	84	69	0	13	16	1.19
1800554--1800612	6	10.7	6	85	10	74	69	0	13	16	1.19
1800811--1801532	267	2.7	268	92	1	1227	46	10	11	32	1.73
1802807--1802846	19	2.1	19	86	9	55	70	5	0	25	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1803852--1803899	2	24.0	2	100	0	96	50	0	50	0	1.00
1804021--1804085	22	2.9	22	93	4	103	53	3	0	43	1.16
1804038--1804077	12	3.5	12	75	25	50	52	2	0	45	1.14
1805506--1805547	22	2.0	20	86	9	57	42	0	0	57	0.99
1817117--1817257	24	5.9	24	73	13	76	29	24	14	31	1.94
1829306--1829930	165	3.8	161	80	6	621	31	9	8	51	1.64
1830008--1830041	2	17.0	2	100	0	68	0	50	0	50	1.00
1832607--1832645	13	3.0	13	92	0	69	30	12	15	41	1.85
1833298--1833353	29	1.9	29	92	7	96	30	33	5	30	1.80
1835156--1835181	13	2.0	13	100	0	52	38	15	15	30	1.88
1837261--1837291	15	2.1	15	93	0	53	12	22	16	48	1.80
1839094--1839138	21	2.1	21	84	8	56	22	20	4	53	1.63
1841359--1841397	13	3.0	13	92	0	69	30	12	15	41	1.85
1842852--1842899	21	2.3	21	88	0	69	41	8	6	43	1.60
1843209--1843308	35	2.9	35	72	8	98	42	16	11	31	1.82
1843265--1843474	69	3.0	69	81	2	226	40	23	9	26	1.84
1843361--1843491	36	3.7	36	80	10	153	41	25	8	24	1.83
1845403--1845445	19	2.3	18	81	14	52	4	11	6	76	1.13
1845410--1845451	19	2.3	19	84	16	61	4	7	9	78	1.08
1850315--1850346	16	1.9	17	93	6	57	71	0	0	28	0.86
1850734--1850785	19	2.5	21	72	12	54	59	5	3	30	1.39
1850756--1850838	33	2.5	33	80	4	94	53	4	2	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1849744--1851005	407	3.0	422	80	8	1412	44	6	10	38	1.65
1852565--1852594	15	2.0	15	93	0	51	43	16	0	40	1.48
1853926--1853951	13	2.0	13	100	0	52	38	15	15	30	1.88
1853904--1853971	33	2.1	32	91	2	109	32	13	19	35	1.90
1854003--1854055	20	2.6	21	90	3	81	26	16	15	41	1.88
1856039--1856090	20	2.4	21	81	12	61	5	26	48	19	1.71
1856524--1856561	13	2.9	13	96	0	67	34	18	15	31	1.92
1856661--1856699	6	6.5	6	100	0	78	53	15	0	30	1.42
1856714--1856848	14	11.2	14	60	30	53	41	5	32	20	1.76
1856709--1856913	35	5.9	35	98	0	401	42	5	31	20	1.75
1858306--1859050	79	9.4	79	91	1	1163	27	25	14	32	1.95
1872621--1872869	55	4.4	56	84	8	317	26	25	21	25	2.00
1872621--1872869	117	2.2	115	86	7	357	26	25	21	25	2.00
1872791--1873063	99	2.8	94	82	8	343	24	28	19	27	1.98
1872678--1873063	209	1.9	194	81	9	461	25	28	19	26	1.99
1872989--1873406	55	7.3	55	84	7	541	26	29	20	22	1.99
1872524--1873235	365	2.0	365	93	1	1212	25	28	20	25	1.99
1872989--1873404	117	3.7	113	85	7	526	26	29	20	23	1.99
1872989--1873406	172	2.4	172	95	1	750	26	29	20	22	1.99
1873426--1873621	61	3.2	61	81	9	256	26	26	18	29	1.98
1873608--1873745	41	3.2	42	74	17	133	19	23	13	43	1.87
1874292--1874319	6	4.7	6	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1874328--1874602	35	7.9	35	97	0	514	42	5	32	20	1.75
1875958--1876307	79	4.4	79	90	0	538	28	25	14	32	1.94
1876239--1876358	51	2.4	51	91	0	186	30	25	13	30	1.93
1876160--1876436	130	2.1	130	93	0	473	28	25	14	31	1.95
1876082--1876516	209	2.1	209	92	0	708	28	24	14	33	1.94
1876290--1876566	79	3.5	79	92	0	455	26	23	15	33	1.95
1876002--1876566	288	2.0	288	92	0	941	27	24	14	33	1.94
1877502--1877527	8	3.2	8	100	0	52	61	23	0	15	1.33
1883467--1883529	33	1.9	33	87	3	92	33	14	17	34	1.90
1887223--1887260	19	1.9	20	84	10	51	55	13	0	31	1.38
1891102--1891207	53	2.0	54	88	5	162	29	14	19	36	1.91
1891903--1891952	23	2.4	19	77	22	64	50	0	0	50	1.00
1891909--1891957	23	2.1	23	100	0	98	48	0	0	51	1.00
1896378--1896415	6	6.0	6	88	11	58	15	2	0	81	0.80
1899665--1899690	13	2.0	13	100	0	52	30	15	15	38	1.88
1900389--1900432	21	2.1	21	83	8	54	27	31	2	38	1.69
1902235--1902273	13	3.0	13	92	0	69	38	17	15	28	1.91
1904356--1904386	15	2.1	15	93	0	53	12	22	16	48	1.80
1906190--1906234	21	2.1	21	84	8	56	22	20	4	53	1.63
1908452--1908477	13	2.0	13	100	0	52	30	15	15	38	1.88
1914631--1914676	21	2.2	20	80	3	56	47	0	0	52	1.00
1914899--1914943	22	2.0	22	84	16	58	42	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1914921--1914973	27	1.9	28	85	11	74	41	1	0	56	1.10
1915113--1915159	13	3.4	13	81	16	58	61	2	0	36	1.08
1915104--1915195	34	2.9	30	77	16	89	52	3	0	44	1.17
1915414--1915459	19	2.5	19	89	3	67	54	0	6	39	1.26
1915584--1915684	31	2.8	37	75	16	115	41	3	1	52	1.31
1915624--1915692	31	2.2	31	84	2	93	47	4	2	44	1.37
1915576--1915667	38	2.4	38	85	3	123	43	3	2	51	1.30
1915590--1915704	30	3.5	31	78	12	106	44	4	1	49	1.32
1915744--1915778	17	2.1	17	100	0	70	48	0	0	51	1.00
1916052--1916105	27	2.0	27	85	7	74	59	7	0	33	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20