genome.fa.s119.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold119
Parameters: 2 7 7 80 10 50 1000
Length:  3173904

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  17  of  20  ( 2346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2554385--2554524	42	3.3	41	72	15	124	40	12	26	20	1.88
2554205--2554606	85	4.8	85	76	8	320	37	12	28	21	1.90
2554647--2554804	84	1.9	84	84	2	210	37	16	28	17	1.91
2556194--2556227	9	3.8	9	92	0	59	2	0	5	91	0.51
2556194--2556238	18	2.3	20	92	7	76	4	4	4	86	0.78
2556164--2556240	30	2.6	30	82	10	88	9	2	6	81	0.94
2556177--2556240	29	2.2	30	86	8	87	6	3	7	82	0.92
2576891--2576966	10	7.6	10	81	8	75	1	23	0	75	0.89
2576895--2576965	32	2.2	32	84	0	97	1	23	0	74	0.90
2577631--2577925	144	2.0	146	86	3	409	53	8	8	30	1.59
2578929--2579065	67	2.0	67	100	0	274	46	16	8	29	1.75
2582209--2582251	23	2.0	21	86	9	59	74	0	0	25	0.82
2589902--2589949	2	24.0	2	100	0	96	50	0	50	0	1.00
2592670--2592705	18	1.9	19	94	5	65	33	2	0	63	1.08
2594513--2594546	4	8.5	4	100	0	68	26	0	0	73	0.83
2594816--2594959	15	9.5	15	72	8	112	27	4	6	61	1.38
2594816--2594991	61	2.9	61	93	1	291	27	5	6	60	1.44
2594816--2594991	30	5.8	30	87	2	244	27	5	6	60	1.44
2598765--2598798	16	2.1	16	94	0	59	35	2	11	50	1.54
2600382--2600432	23	2.4	21	84	15	61	43	15	1	39	1.58
2600330--2600637	161	1.9	159	83	5	390	44	8	6	40	1.61
2600547--2600594	21	2.2	22	81	7	53	50	10	0	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2600735--2600795	29	2.1	29	90	6	97	54	4	9	31	1.55
2601756--2602009	14	19.3	14	75	12	164	30	20	20	29	1.97
2601756--2602009	27	9.1	28	74	12	150	30	20	20	29	1.97
2601783--2601850	35	1.9	35	88	5	102	32	23	19	25	1.97
2601873--2601967	41	2.4	39	87	3	136	28	20	20	31	1.97
2602345--2602369	2	12.5	2	100	0	50	48	0	0	52	1.00
2602527--2602874	67	5.2	67	86	2	466	34	17	22	25	1.95
2604041--2604106	20	3.7	20	69	26	74	31	15	16	36	1.90
2604039--2604139	33	3.1	33	92	4	161	33	14	15	35	1.89
2604041--2604117	13	6.9	12	66	25	53	32	14	16	36	1.89
2604219--2604243	13	1.9	13	100	0	50	36	16	16	32	1.90
2612870--2612894	13	1.9	13	100	0	50	36	16	16	32	1.90
2614271--2614320	20	2.5	20	83	0	64	34	12	14	40	1.82
2614342--2614416	20	3.8	20	85	0	105	33	14	12	40	1.83
2614260--2614398	71	2.0	71	97	0	260	28	16	13	41	1.87
2614342--2614419	40	2.0	39	92	2	129	33	14	12	39	1.84
2614271--2614446	91	1.9	91	86	2	246	30	15	13	40	1.85
2615604--2615629	13	2.0	13	100	0	52	30	15	15	38	1.88
2618154--2618192	13	3.0	13	96	0	69	35	15	17	30	1.91
2618178--2618256	20	3.7	20	78	15	77	44	15	15	25	1.85
2620271--2620301	15	2.1	15	93	0	53	12	22	16	48	1.80
2622105--2622149	21	2.1	21	84	8	56	22	20	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2624367--2624392	13	2.0	13	100	0	52	30	15	15	38	1.88
2626056--2626080	13	1.9	13	100	0	50	36	16	16	32	1.90
2626069--2626118	19	2.6	19	96	0	91	32	12	18	38	1.87
2626195--2626323	52	2.5	52	92	0	222	35	19	17	27	1.94
2639530--2639582	8	6.5	8	81	12	63	83	16	0	0	0.66
2639521--2639583	18	3.6	17	85	12	76	84	15	0	0	0.63
2639522--2639583	25	2.5	25	87	10	92	85	14	0	0	0.60
2641073--2641422	34	10.7	34	75	13	217	20	31	13	34	1.91
2641168--2641278	28	4.0	27	77	10	107	26	33	17	23	1.96
2641062--2641419	68	5.4	68	73	16	256	20	31	13	34	1.91
2641392--2641464	27	2.6	28	80	10	78	26	30	15	28	1.96
2641444--2641522	28	2.7	30	75	18	78	37	31	11	18	1.87
2641423--2641529	29	3.6	30	76	12	114	34	29	16	18	1.94
2641539--2641820	49	5.8	49	79	9	247	25	26	18	29	1.98
2641880--2642392	154	3.3	154	94	0	873	23	25	16	34	1.95
2641898--2642269	52	7.2	52	66	12	194	22	26	16	33	1.96
2642965--2643014	20	2.5	20	83	0	64	36	12	12	40	1.79
2643036--2643110	20	3.8	20	83	0	96	34	14	10	40	1.81
2642954--2643092	71	2.0	71	94	0	242	29	15	12	41	1.85
2642965--2643160	91	2.2	91	85	3	252	31	16	12	40	1.85
2644950--2645033	19	4.7	19	77	18	99	33	13	16	36	1.87
2644951--2645014	32	2.0	33	93	3	112	34	14	17	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2645113--2645238	52	2.4	52	93	0	216	36	19	16	26	1.93
2648255--2648343	40	2.2	40	91	0	142	21	29	24	24	1.99
2648393--2648421	10	2.7	11	94	5	51	34	13	0	51	1.42
2660699--2660765	1	67.0	1	75	0	53	86	8	1	2	0.73
2660699--2660765	10	6.4	10	78	13	64	86	8	1	2	0.73
2660690--2660765	26	2.9	25	75	14	82	85	10	1	2	0.76
2662007--2662471	28	16.2	28	80	8	422	30	29	16	23	1.96
2663383--2663436	20	2.7	20	91	0	90	33	9	18	38	1.83
2667693--2667767	20	3.8	19	77	7	78	42	12	13	32	1.80
2668346--2668767	29	14.5	29	86	5	543	23	17	30	28	1.97
2668346--2668767	57	7.2	57	85	7	530	23	17	30	28	1.97
2670013--2670044	1	32.0	1	93	0	55	0	0	3	96	0.20
2670002--2670045	8	5.0	9	86	8	56	0	2	9	88	0.59
2679737--2679778	20	2.1	20	86	0	57	71	7	9	11	1.31
2683020--2683068	22	2.2	21	79	13	53	46	12	14	26	1.79
2684025--2684102	20	3.9	20	76	6	86	42	11	12	33	1.79
2687921--2687967	14	3.5	13	80	11	51	31	23	19	25	1.98
2687996--2688166	40	4.3	40	80	3	132	28	25	19	26	1.99
2687993--2688166	13	13.1	13	77	7	152	27	25	20	27	1.99
2688029--2688154	27	4.7	27	80	2	148	29	25	17	27	1.97
2687984--2688166	27	6.9	27	76	7	135	27	25	20	26	1.99
2688222--2688256	13	2.6	14	90	4	54	34	28	11	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2689045--2689088	18	2.4	18	80	0	52	61	4	0	34	1.16
2689725--2689766	21	2.0	22	90	4	68	45	16	0	38	1.48
2694488--2695068	195	3.0	195	91	1	939	38	18	13	29	1.90
2696899--2696939	2	20.5	2	100	0	82	48	0	0	51	1.00
2698676--2698722	22	2.1	22	84	0	58	38	0	0	61	0.96
2698684--2698764	22	3.7	21	77	8	72	49	0	0	50	1.00
2698713--2698783	29	2.4	30	82	13	85	57	0	0	42	0.98
2698715--2698783	30	2.3	29	80	9	77	57	0	0	42	0.98
2700673--2700710	15	2.4	16	91	4	60	81	0	10	7	0.87
2700874--2700913	20	2.0	20	85	4	55	42	0	0	57	0.98
2701144--2701196	23	2.3	23	80	9	63	69	0	15	15	1.19
2701645--2701688	23	1.9	23	86	9	63	54	2	0	43	1.12
2702256--2702303	15	3.3	15	86	13	73	35	0	0	64	0.94
2702301--2702328	7	4.0	7	100	0	56	28	0	0	71	0.86
2704293--2704325	2	16.5	2	100	0	66	0	0	48	51	1.00
2706356--2706532	89	2.0	88	96	1	327	31	25	14	28	1.95
2709469--2709814	178	1.9	178	89	1	541	35	13	17	33	1.88
2713942--2713966	2	12.5	2	100	0	50	0	48	0	52	1.00
2717490--2717522	17	1.9	17	93	0	57	15	36	18	30	1.91
2718784--2718958	88	2.0	86	84	7	228	43	9	10	36	1.72
2721386--2721415	9	3.3	9	100	0	60	30	0	0	70	0.88
2723695--2723795	52	1.9	52	87	0	148	32	20	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2723858--2724198	106	3.2	107	76	4	332	31	16	26	26	1.97
2723858--2724198	53	6.4	53	75	8	284	31	16	26	26	1.97
2724312--2724444	65	2.0	65	81	5	153	33	14	16	35	1.89
2724650--2724697	21	2.3	21	88	0	69	31	14	29	25	1.95
2725201--2725256	27	2.1	27	96	0	103	35	25	12	26	1.91
2728312--2728440	52	2.5	52	94	0	231	29	18	17	34	1.94
2728449--2728473	13	1.9	13	100	0	50	36	16	16	32	1.90
2728535--2728559	13	1.9	13	100	0	50	32	16	16	36	1.90
2728514--2728579	32	2.0	33	94	2	116	36	16	12	34	1.86
2730527--2730594	19	3.9	19	78	21	85	35	11	14	38	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20