genome.fa.s119.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold119
Parameters: 2 7 7 80 10 50 1000
Length:  3173904

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  9  of  20  ( 2346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1396836--1396862	13	2.1	13	100	0	54	40	14	14	29	1.86
1403043--1403096	20	2.7	20	82	5	56	37	20	11	31	1.88
1404910--1404965	19	2.8	20	81	2	69	33	16	14	35	1.88
1405367--1405439	19	3.7	19	83	3	92	34	12	13	39	1.82
1405471--1405498	13	2.2	13	100	0	56	28	14	17	39	1.89
1407132--1407255	52	2.4	53	84	2	162	31	25	10	32	1.90
1407238--1407314	28	2.7	29	84	4	95	24	33	18	23	1.96
1411121--1411231	50	2.2	51	87	3	154	38	9	25	26	1.87
1411471--1411930	230	2.0	230	88	1	688	33	11	21	33	1.90
1414173--1414335	63	2.4	66	77	15	172	38	16	20	25	1.93
1414205--1414893	63	11.0	63	79	4	648	33	17	21	27	1.96
1414898--1414989	29	3.1	29	82	4	114	28	16	30	25	1.96
1417114--1417160	20	2.3	21	92	3	78	38	8	19	34	1.82
1417234--1417288	20	2.8	20	91	0	92	40	16	9	34	1.80
1419774--1419841	20	3.7	19	71	28	67	41	14	14	29	1.86
1419770--1419838	34	2.0	34	97	0	129	40	14	15	28	1.87
1423112--1423282	51	3.3	51	78	4	189	33	11	26	29	1.91
1423266--1423340	27	2.7	28	87	6	100	21	20	34	24	1.96
1425808--1425833	13	2.0	13	100	0	52	38	15	15	30	1.88
1425787--1425853	33	2.0	33	88	0	98	43	16	14	25	1.86
1425873--1425940	19	3.9	18	76	23	83	38	14	11	35	1.83
1425895--1425919	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1425876--1425938	32	2.0	32	96	0	117	36	15	12	34	1.86
1426004--1426029	13	2.0	13	100	0	52	23	7	0	69	1.14
1430770--1430824	20	2.8	20	88	5	76	36	14	12	36	1.84
1432310--1432407	49	2.0	49	97	0	187	35	8	17	38	1.79
1435207--1435884	55	12.3	55	92	2	1014	21	20	29	28	1.98
1435207--1435884	165	4.1	165	94	2	1130	21	20	29	28	1.98
1435748--1435837	26	3.3	26	68	14	83	21	17	32	28	1.96
1436867--1436906	14	2.9	14	85	3	55	0	5	7	87	0.66
1455296--1455466	51	3.3	51	79	4	198	32	11	26	29	1.92
1455449--1455524	27	2.8	28	88	6	102	21	21	34	23	1.97
1457993--1458018	13	2.0	13	100	0	52	38	15	15	30	1.88
1457972--1458038	33	2.0	33	88	0	98	43	16	14	25	1.86
1458058--1458125	19	3.9	18	76	23	83	38	14	11	35	1.83
1458080--1458104	13	1.9	13	100	0	50	32	16	16	36	1.90
1458061--1458123	32	2.0	32	96	0	117	36	15	12	34	1.86
1458188--1458215	14	2.0	14	100	0	56	21	7	0	71	1.09
1462957--1463011	20	2.8	20	88	5	76	36	14	12	36	1.84
1464497--1464594	49	2.0	49	97	0	187	35	8	17	38	1.79
1469223--1469571	32	10.7	33	73	7	239	39	18	11	30	1.86
1469223--1469380	66	2.4	65	87	1	226	40	17	10	31	1.84
1469231--1469509	97	2.9	97	81	3	276	38	19	10	31	1.86
1469241--1469569	97	3.4	97	79	4	263	39	18	10	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1469271--1469609	130	2.6	130	77	4	324	38	18	11	30	1.87
1469541--1469675	65	2.1	65	84	9	177	40	17	12	30	1.86
1471446--1471499	27	2.0	27	88	0	81	42	18	9	29	1.81
1479509--1479533	12	2.1	12	100	0	50	24	8	8	60	1.52
1480986--1481033	25	1.9	25	86	0	69	22	6	20	50	1.71
1482404--1482487	38	2.2	38	85	6	109	35	10	13	40	1.79
1482489--1482585	36	2.6	36	74	6	88	30	13	14	41	1.84
1482651--1482731	24	3.3	24	82	1	99	27	18	17	37	1.93
1483690--1483749	29	2.1	29	81	12	70	38	5	26	30	1.78
1483713--1483746	17	2.0	17	94	0	59	41	2	29	26	1.70
1484786--1484812	13	2.1	13	100	0	54	37	14	7	40	1.74
1484817--1484855	20	2.0	20	89	0	60	43	5	15	35	1.69
1486453--1486483	3	10.3	3	100	0	62	35	0	32	32	1.58
1491112--1491153	21	2.0	21	85	0	57	28	21	0	50	1.49
1493404--1493442	20	1.9	21	89	5	62	35	20	23	20	1.96
1495288--1496096	155	5.3	152	76	7	600	40	19	16	24	1.91
1495769--1497076	660	2.0	661	97	0	2449	38	18	13	28	1.89
1498427--1498469	14	2.8	15	82	10	52	67	0	2	30	1.03
1502393--1502417	8	3.1	8	100	0	50	60	0	0	40	0.97
1502633--1502667	14	2.5	14	90	0	52	51	0	0	48	1.00
1502657--1502697	21	1.9	21	90	5	64	48	0	0	51	1.00
1509200--1509226	5	5.4	5	100	0	54	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1509679--1509738	32	2.0	30	83	9	77	23	10	1	65	1.32
1512175--1512217	21	2.1	20	86	4	59	46	0	9	44	1.35
1520470--1520651	88	2.1	88	86	6	253	35	9	24	30	1.88
1520495--1520687	88	2.2	87	83	5	237	35	9	24	30	1.88
1523357--1523381	13	1.9	13	100	0	50	32	16	16	36	1.90
1523481--1523506	13	2.0	13	100	0	52	38	15	15	30	1.88
1523463--1523526	33	2.0	32	90	3	101	39	20	14	26	1.90
1529659--1529695	13	2.8	13	91	0	56	32	13	18	35	1.90
1532191--1532216	13	2.0	13	100	0	52	38	15	15	30	1.88
1532173--1532236	33	2.0	32	87	3	92	39	18	14	28	1.90
1533114--1533180	35	1.9	35	93	0	116	43	16	19	20	1.88
1537473--1537593	52	2.3	52	97	0	224	28	18	18	34	1.94
1537473--1537613	52	2.7	51	90	4	212	30	17	18	33	1.94
1537602--1537626	13	1.9	13	100	0	50	36	16	16	32	1.90
1537693--1537717	13	1.9	13	100	0	50	32	16	16	36	1.90
1537671--1537736	33	2.0	33	87	0	96	39	13	12	34	1.82
1541439--1541755	107	3.0	104	78	9	311	29	14	25	29	1.95
1541925--1542059	69	1.9	70	82	7	168	40	13	17	28	1.87
1541951--1542084	70	1.9	69	80	4	153	38	14	19	26	1.91
1542194--1542532	148	2.3	149	80	7	408	40	13	19	25	1.89
1542202--1542719	74	7.1	74	75	7	272	39	13	20	26	1.90
1542746--1546865	74	55.7	74	73	10	1216	37	13	22	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1543005--1546888	73	52.7	72	76	9	2604	37	13	22	27	1.91
1544920--1545096	89	2.0	88	86	1	246	36	8	24	31	1.85
1544715--1546885	220	9.8	216	73	11	890	37	13	22	26	1.91
1549564--1549589	13	2.0	13	100	0	52	38	15	15	30	1.88
1554036--1554061	13	2.0	13	100	0	52	30	15	15	38	1.88
1554100--1554175	21	3.7	21	80	3	100	28	17	11	42	1.84
1554121--1554193	20	3.6	20	81	3	101	31	19	13	35	1.91
1554100--1554193	41	2.3	41	98	0	179	29	18	12	39	1.88
1554812--1554874	31	2.0	31	100	0	126	46	25	3	25	1.68
1556669--1556707	13	3.0	13	96	0	69	35	15	17	30	1.91
1556693--1556771	20	3.7	20	70	20	70	45	16	12	25	1.82
1562870--1562895	13	2.0	13	100	0	52	30	15	15	38	1.88
1562934--1563009	21	3.7	21	80	3	100	28	17	11	42	1.84
1562955--1563027	20	3.6	20	81	3	101	31	19	13	35	1.91
1562934--1563027	41	2.3	41	98	0	179	29	18	12	39	1.88
1564671--1564887	97	2.3	93	80	6	240	38	13	21	27	1.90
1566518--1566643	52	2.4	52	82	2	137	46	11	15	26	1.80
1576403--1576428	13	2.0	13	100	0	52	30	15	15	38	1.88
1577075--1577298	107	2.1	107	99	0	439	29	27	5	37	1.80
1579076--1579114	13	3.0	13	96	0	69	35	15	17	30	1.91
1579100--1579178	20	3.7	20	78	15	77	44	15	15	25	1.85
1581184--1581214	15	2.1	15	100	0	62	12	19	16	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583017--1583061	21	2.1	21	84	8	56	22	20	4	53	1.63
1585279--1585304	13	2.0	13	100	0	52	30	15	15	38	1.88
1588266--1588370	20	4.8	20	72	21	93	25	16	15	42	1.87
1588267--1588419	69	2.2	70	91	1	245	26	16	15	41	1.88
1590773--1590981	79	2.6	81	76	8	212	30	22	11	35	1.90
1591046--1591164	51	2.3	51	88	0	184	30	27	11	30	1.92
1590833--1591189	130	2.7	129	81	6	439	29	25	12	32	1.93
1591144--1591199	28	2.0	28	89	0	85	21	26	17	33	1.96
1593267--1593307	12	3.4	13	83	12	52	9	0	9	80	0.91
1600095--1600412	157	2.0	157	97	0	600	36	15	21	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20