genome.fa.s119.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold119
Parameters: 2 7 7 80 10 50 1000
Length:  3173904

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  19  of  20  ( 2346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2875606--2875647	12	3.0	14	86	13	52	38	0	0	61	0.96
2875602--2875651	13	3.8	13	73	23	50	34	0	0	66	0.92
2876139--2876334	97	2.0	97	94	0	347	31	7	11	48	1.68
2876720--2876772	20	2.7	20	93	0	97	24	15	16	43	1.87
2876758--2876784	13	2.1	13	100	0	54	29	14	14	40	1.86
2876765--2876906	20	7.0	19	68	15	88	30	16	18	34	1.93
2878407--2878462	20	2.8	19	83	5	67	37	16	16	30	1.90
2878532--2878557	13	2.0	13	100	0	52	38	15	15	30	1.88
2878514--2878578	32	2.0	32	87	6	94	40	18	13	27	1.89
2880776--2880831	21	2.6	22	75	13	64	55	7	14	23	1.63
2884724--2884761	13	2.9	13	96	0	67	34	18	15	31	1.92
2884882--2884927	21	2.2	20	81	11	58	32	19	4	43	1.71
2887194--2887249	20	2.8	19	83	5	67	37	16	16	30	1.90
2887319--2887344	13	2.0	13	100	0	52	38	15	15	30	1.88
2887301--2887365	32	2.0	32	87	6	94	40	18	13	27	1.89
2892558--2892584	13	2.1	13	100	0	54	29	14	14	40	1.86
2892569--2892625	19	2.9	19	89	5	87	31	14	17	36	1.89
2892540--2892603	32	2.0	33	87	9	96	28	15	15	40	1.88
2892565--2892706	20	7.0	19	69	15	97	31	16	17	33	1.93
2897067--2897368	87	3.5	86	90	3	448	31	32	17	18	1.94
2897067--2897368	57	5.2	57	87	4	394	31	32	17	18	1.94
2897064--2897368	144	2.1	144	91	1	504	31	32	17	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2897066--2897378	28	10.8	29	84	7	150	31	31	17	18	1.95
2897437--2897774	49	6.8	49	75	6	313	23	27	17	32	1.96
2897388--2897760	101	3.8	101	79	5	315	24	26	17	31	1.97
2906653--2906727	20	3.8	20	100	0	150	26	10	22	40	1.87
2906714--2906739	13	2.0	13	100	0	52	30	15	15	38	1.88
2906694--2906757	33	2.0	32	90	3	101	26	14	20	39	1.90
2906788--2906842	20	2.7	21	83	8	69	29	16	14	40	1.88
2913665--2913767	24	4.3	24	75	19	90	81	9	8	0	0.87
2913688--2913743	18	3.2	18	80	12	62	83	8	7	0	0.80
2913665--2913773	52	2.1	52	82	3	130	81	10	8	0	0.87
2913665--2913758	14	6.6	14	77	12	86	82	7	9	0	0.83
2913665--2913758	28	3.3	27	80	14	100	82	7	9	0	0.83
2915718--2915742	13	1.9	13	100	0	50	36	16	16	32	1.90
2915695--2915762	33	2.1	33	88	2	102	32	14	17	35	1.91
2915794--2915846	20	2.6	21	78	3	63	28	15	15	41	1.87
2915834--2915858	13	1.9	13	100	0	50	36	16	16	32	1.90
2916426--2916715	28	10.1	28	83	4	328	31	31	17	20	1.95
2916420--2916715	87	3.4	85	88	2	394	31	31	16	20	1.95
2922717--2922741	13	1.9	13	100	0	50	36	16	16	32	1.90
2922694--2922761	33	2.1	33	91	2	111	33	14	16	35	1.89
2938308--2938401	15	6.4	14	76	11	82	81	6	10	1	0.90
2938319--2938365	24	2.0	24	91	8	78	80	12	4	2	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2939833--2940162	28	11.5	28	82	4	365	32	31	17	18	1.94
2939827--2940162	87	3.9	85	85	5	433	32	31	16	19	1.94
2939833--2940162	144	2.3	143	86	2	464	32	31	17	18	1.94
2940231--2940591	49	7.2	49	76	8	316	23	27	17	31	1.97
2940183--2940559	101	3.9	101	80	6	359	24	27	17	30	1.97
2947596--2947626	11	2.8	11	100	0	62	48	6	9	35	1.62
2951783--2951834	19	2.6	19	87	6	68	25	13	19	42	1.87
2956054--2956148	48	2.0	46	95	4	172	49	20	2	28	1.60
2957935--2957972	13	2.9	13	96	0	67	31	15	18	34	1.92
2964116--2964167	19	2.6	19	87	6	68	25	13	19	42	1.87
2967425--2967517	14	6.4	14	76	7	78	82	7	9	0	0.83
2967425--2967486	19	3.3	18	77	18	56	83	11	4	0	0.78
2969212--2969236	13	1.9	13	100	0	50	36	16	16	32	1.90
2969189--2969256	33	2.1	33	88	2	102	32	14	17	35	1.91
2969288--2969340	20	2.6	21	84	3	72	28	16	15	39	1.89
2971332--2971373	20	2.0	21	90	4	68	4	28	47	19	1.69
2978024--2978048	13	1.9	13	100	0	50	36	16	16	32	1.90
2978001--2978068	33	2.1	33	88	2	102	33	14	14	36	1.87
2978731--2979033	28	10.5	29	81	7	350	32	31	16	19	1.94
2978732--2979033	57	5.2	56	83	5	345	32	31	16	19	1.94
2978736--2978999	144	1.8	144	95	0	474	32	31	17	18	1.94
2978732--2979033	87	3.5	85	85	4	392	32	31	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2978962--2979043	28	2.8	30	78	14	91	32	28	19	19	1.96
2978731--2979033	144	2.1	143	88	3	464	32	31	16	19	1.94
2979102--2979428	49	6.6	49	78	6	338	23	28	17	30	1.97
2979114--2979425	101	3.1	98	82	7	344	23	27	17	31	1.97
2992610--2992702	15	6.4	14	78	9	89	81	6	10	1	0.91
2992608--2992676	24	2.8	25	78	17	81	81	8	7	2	0.97
2994133--2994424	87	3.3	86	87	4	399	30	31	18	19	1.96
2994133--2994422	57	5.0	57	84	5	341	30	31	18	19	1.95
2994134--2994412	144	1.9	145	88	2	427	31	32	17	18	1.94
2994133--2994417	29	9.8	28	81	7	155	30	31	18	19	1.95
2994476--2994814	49	6.8	49	76	9	310	23	27	17	31	1.97
2994488--2994814	101	3.3	101	80	5	346	23	27	17	31	1.97
3003289--3003314	13	2.0	13	100	0	52	30	15	15	38	1.88
3003269--3003332	33	2.0	32	90	3	101	26	14	20	39	1.90
3003374--3003425	21	2.5	21	87	9	72	26	17	15	40	1.89
3010211--3010244	14	2.5	13	86	9	50	82	0	17	0	0.67
3011695--3012022	28	11.5	28	82	8	369	33	31	17	18	1.94
3011699--3012022	57	5.7	56	78	11	320	33	31	17	17	1.93
3011693--3012022	86	3.9	84	86	5	432	33	30	16	18	1.94
3012090--3012426	48	6.8	49	75	9	281	24	27	16	31	1.96
3012090--3012417	49	6.6	49	78	8	272	25	27	17	30	1.97
3012139--3012321	102	1.8	101	90	3	296	24	28	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3025713--3025805	15	6.4	14	78	9	89	81	6	10	1	0.91
3025711--3025779	24	2.8	25	78	17	81	81	8	7	2	0.97
3027236--3027527	87	3.3	86	87	4	399	30	31	18	19	1.96
3027236--3027525	57	5.0	57	84	5	341	30	31	18	19	1.95
3027237--3027515	144	1.9	145	88	2	427	31	32	17	18	1.94
3027236--3027520	29	9.8	28	81	7	155	30	31	18	19	1.95
3027579--3027917	49	6.8	49	76	9	310	23	27	17	31	1.97
3027591--3027917	101	3.3	101	80	5	346	23	27	17	31	1.97
3036391--3036416	13	2.0	13	100	0	52	30	15	15	38	1.88
3036371--3036434	33	2.0	32	90	3	101	26	14	20	39	1.90
3036476--3036527	21	2.5	21	87	9	72	26	17	15	40	1.89
3043321--3043357	15	2.6	14	87	8	56	83	0	16	0	0.64
3044808--3045137	28	11.5	28	83	7	387	33	31	16	18	1.93
3044802--3045137	87	3.9	86	87	3	462	33	31	16	18	1.93
3044808--3045137	144	2.3	143	86	5	486	33	31	16	18	1.93
3045206--3045543	49	6.8	49	77	6	322	24	27	16	31	1.97
3045206--3045490	101	2.9	101	85	2	353	24	28	16	30	1.97
3060251--3060333	11	7.5	11	74	18	59	80	6	10	2	0.97
3060272--3060339	15	4.9	14	72	24	54	82	5	8	2	0.93
3060246--3060319	24	2.9	25	78	11	71	79	8	8	4	1.04
3061701--3061970	28	9.4	29	84	6	336	32	31	17	18	1.94
3061692--3061944	87	2.9	87	92	1	402	32	31	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3061701--3061970	115	2.3	115	87	4	375	32	31	17	18	1.94
3062052--3062378	49	6.6	49	77	6	327	23	26	18	31	1.97
3062052--3062378	101	3.3	100	81	4	358	23	26	18	31	1.97
3062983--3063008	13	2.0	13	100	0	52	30	15	15	38	1.88
3075082--3075111	13	2.3	13	94	0	51	40	13	13	33	1.83
3075155--3075215	20	3.1	19	83	6	77	32	14	13	39	1.85
3075196--3075222	13	2.1	13	100	0	54	40	14	14	29	1.86
3077744--3077780	13	2.8	13	91	0	65	37	16	16	29	1.90
3080193--3080308	51	2.3	51	95	0	205	28	16	29	25	1.97
3080324--3080437	51	2.3	51	90	1	176	30	10	27	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20