genome.fa.s119.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold119
Parameters: 2 7 7 80 10 50 1000
Length:  3173904

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3080422--3080493	28	2.6	27	78	10	83	26	23	27	22	1.99
3080374--3080678	107	2.9	108	86	2	411	32	16	24	26	1.96
3080527--3080603	28	2.8	28	74	7	77	25	19	32	22	1.97
3080576--3080728	79	1.9	79	82	2	191	33	15	24	27	1.95
3080670--3080881	51	4.2	50	76	4	203	34	12	24	29	1.91
3080670--3080881	102	2.1	102	89	0	316	34	12	24	29	1.91
3083181--3083259	20	4.0	20	81	6	97	40	11	16	31	1.84
3083634--3083696	19	3.6	19	74	24	75	33	11	19	36	1.87
3083653--3083710	13	4.0	13	74	23	53	34	15	17	32	1.91
3083634--3083709	32	2.4	32	95	0	134	32	13	18	35	1.89
3087739--3087792	20	2.7	20	85	2	63	33	12	18	35	1.89
3090806--3090831	13	2.0	13	100	0	52	30	15	15	38	1.88
3093393--3093431	13	3.0	13	96	0	69	35	15	17	30	1.91
3097135--3097179	22	2.1	21	84	8	56	22	15	6	55	1.63
3097124--3097179	21	2.7	21	75	13	62	23	14	7	55	1.63
3099398--3099423	13	2.0	13	100	0	52	30	15	15	38	1.88
3101985--3102023	13	3.0	13	96	0	69	35	15	17	30	1.91
3105728--3105772	22	2.1	21	84	8	56	22	15	6	55	1.63
3105717--3105772	21	2.7	21	75	13	62	23	14	7	55	1.63
3107991--3108016	13	2.0	13	100	0	52	30	15	15	38	1.88
3112571--3112713	73	2.0	73	94	0	250	33	14	12	39	1.84
3115281--3115323	22	2.0	21	82	13	52	37	9	13	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3115441--3115467	13	2.1	13	100	0	54	29	14	14	40	1.86
3115451--3115499	19	2.5	19	86	3	71	30	18	14	36	1.90
3115557--3115581	13	1.9	13	100	0	50	40	20	8	32	1.81
3116355--3117108	79	9.5	79	84	3	824	28	25	13	33	1.93
3120214--3120264	20	2.6	19	87	12	68	29	17	13	39	1.88
3120296--3120349	19	2.7	20	82	5	65	37	18	12	31	1.89
3120338--3120362	13	1.9	13	100	0	50	32	16	16	36	1.90
3120321--3120383	33	1.9	32	90	3	99	38	17	15	28	1.91
3122816--3122857	13	3.2	13	82	0	57	40	11	16	30	1.85
3126866--3126890	13	1.9	13	100	0	50	36	16	16	32	1.90
3128284--3128697	49	8.8	48	86	7	498	30	17	24	27	1.97
3128324--3128698	43	8.1	43	85	10	453	30	16	25	27	1.97
3128560--3128627	21	3.2	21	62	25	52	27	17	29	25	1.97
3128284--3128697	92	4.4	94	83	8	533	30	17	24	27	1.97
3128798--3128918	27	4.2	27	76	13	116	29	13	35	21	1.91
3128765--3128946	60	3.0	61	87	1	258	30	13	34	20	1.92
3128893--3129142	34	7.7	33	74	6	163	32	14	29	24	1.94
3128900--3129140	33	7.5	32	74	9	161	31	14	29	24	1.94
3128908--3129093	64	2.9	65	77	9	218	34	15	29	21	1.94
3128908--3129140	128	1.8	128	86	3	344	32	14	29	23	1.94
3128918--3129141	64	3.5	63	77	11	215	32	14	29	23	1.94
3128921--3129142	31	7.1	29	76	10	124	31	14	29	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3130583--3130607	13	1.9	13	100	0	50	36	16	16	32	1.90
3132283--3132327	22	2.0	22	87	8	65	35	28	0	35	1.58
3134017--3134058	22	2.0	21	86	13	61	40	0	21	38	1.53
3134190--3134227	13	2.9	13	96	0	67	34	18	15	31	1.92
3140882--3140933	20	2.4	21	87	12	79	3	23	50	23	1.66
3142129--3142890	328	2.3	328	90	2	1192	29	23	17	30	1.97
3142593--3143516	298	3.0	298	82	8	1013	26	25	18	30	1.98
3142892--3145001	328	6.4	326	89	2	3160	28	24	18	28	1.98
3142891--3170366	983	27.4	980	76	9	18537	28	23	17	29	1.97
3144836--3145186	185	1.9	185	90	0	558	32	26	19	21	1.97
3145009--3150428	328	16.5	328	89	1	7881	28	24	17	29	1.98
3145009--3170366	656	38.1	655	78	7	21653	28	23	17	29	1.97
3150263--3150613	185	1.9	185	87	1	515	31	26	19	22	1.98
3150436--3170366	328	60.3	328	82	4	21816	28	23	17	29	1.97
3154708--3155058	185	1.9	185	88	2	535	31	26	18	22	1.97
3154881--3170366	328	47.3	328	89	1	22543	28	23	17	29	1.97
3170238--3170502	136	1.9	137	94	2	471	37	24	15	22	1.93
3169906--3171286	459	3.0	461	93	1	2261	31	24	16	27	1.97
3170828--3173244	328	7.4	328	87	2	3470	29	23	17	29	1.97
3170830--3173244	980	2.5	979	92	0	4037	29	23	17	30	1.97
3173116--3173377	136	2.0	131	84	3	344	37	23	16	22	1.94
3173247--3173904	322	2.0	327	86	5	933	29	24	17	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!