genome.fa.s119.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold119
Parameters: 2 7 7 80 10 50 1000
Length:  3173904

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  6  of  20  ( 2346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860405--860471	33	2.0	33	88	0	98	25	14	16	43	1.86
862932--863000	27	2.5	27	88	2	93	24	31	21	21	1.98
862987--863156	52	3.3	53	76	11	172	30	25	12	31	1.93
862820--863155	104	3.2	102	72	13	295	30	26	12	31	1.93
863140--863216	28	2.8	28	88	4	102	23	32	19	24	1.97
862818--863223	212	1.9	212	88	3	620	28	27	13	31	1.94
862878--863290	107	3.9	107	74	12	310	28	27	14	30	1.95
866360--866471	51	2.2	52	82	4	129	37	15	20	26	1.92
866403--866785	79	4.8	79	89	0	604	32	14	25	27	1.94
866719--866993	51	5.4	51	78	6	268	33	12	25	28	1.92
866719--866993	104	2.7	103	79	6	290	33	12	25	28	1.92
866882--867122	129	1.9	130	82	4	308	31	14	26	27	1.95
867004--867137	51	2.6	51	81	10	166	30	11	27	29	1.92
868037--868107	18	3.9	18	78	9	72	7	22	36	33	1.81
868062--868163	43	2.4	43	93	0	177	6	20	37	35	1.80
868093--868194	43	2.4	43	81	0	105	8	21	38	31	1.84
868494--868646	50	3.1	50	94	0	270	16	24	14	45	1.84
868636--868726	26	3.5	26	95	0	164	12	30	7	49	1.68
868831--868857	6	4.5	6	100	0	54	29	0	14	55	1.40
869479--870085	117	5.2	116	82	10	679	27	20	26	26	1.99
869479--870060	62	9.9	61	80	9	477	27	20	26	25	1.99
869527--870062	295	1.8	295	87	4	808	27	20	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883488--883634	51	2.8	51	74	7	145	38	13	21	26	1.90
883568--883950	79	4.8	79	95	0	685	32	14	25	27	1.95
883882--884118	104	2.3	102	81	5	271	34	11	24	29	1.91
883882--884156	51	5.3	52	80	6	260	33	12	25	29	1.92
884192--884290	51	1.9	52	87	2	146	34	11	24	30	1.90
885247--885345	43	2.3	43	85	0	135	10	22	35	32	1.87
885275--885376	43	2.4	43	81	0	105	10	23	36	29	1.89
885676--885828	50	3.1	50	99	0	297	15	24	14	45	1.84
885818--885908	26	3.5	26	95	0	164	12	30	7	49	1.68
886013--886054	13	3.3	12	90	6	57	28	2	2	66	1.16
886013--886054	6	6.7	6	86	8	57	28	2	2	66	1.16
894477--894504	13	2.2	13	100	0	56	53	7	0	39	1.28
895280--895332	19	2.8	19	75	16	56	20	0	7	71	1.10
896705--896733	15	2.0	15	93	6	51	27	0	3	68	1.05
896801--896841	21	1.9	22	95	5	75	34	2	2	60	1.23
896839--896904	26	2.4	26	77	7	69	63	1	0	34	1.04
897000--897042	19	2.3	19	84	8	52	51	4	0	44	1.22
898772--898810	12	3.2	12	81	0	51	74	2	17	5	1.12
908642--908675	17	2.1	17	88	5	52	0	23	8	67	1.18
910609--910651	16	2.4	19	85	14	56	48	0	0	51	1.00
918012--918235	112	2.0	112	96	0	412	41	16	8	33	1.80
921178--921214	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923724--923757	18	1.9	18	88	5	52	8	29	14	47	1.75
926905--927085	99	1.8	100	90	1	292	36	6	8	49	1.58
927481--927511	16	1.9	16	100	0	62	38	25	19	16	1.92
927541--927572	16	2.0	16	93	0	55	37	40	18	3	1.67
928142--928187	24	1.9	24	95	0	83	21	4	15	58	1.54
935804--935841	18	2.2	18	90	4	60	34	7	0	57	1.28
936174--936237	26	2.5	25	82	2	65	75	0	10	14	1.06
936587--936654	21	3.2	21	77	4	75	44	20	0	35	1.52
941056--941342	151	1.9	151	81	2	353	43	14	10	31	1.80
943388--943531	11	13.5	11	68	17	65	57	2	0	38	1.18
943408--943467	31	1.9	32	86	3	86	56	6	0	36	1.26
945626--945664	20	2.0	20	89	0	60	41	2	0	56	1.13
946844--946874	2	16.0	2	93	6	55	51	0	0	48	1.00
947601--947632	14	2.1	16	88	11	50	62	0	9	28	1.26
950755--950792	6	6.3	6	82	11	51	81	2	2	13	0.90
951554--952061	280	1.8	282	93	4	882	32	10	9	47	1.70
954366--954421	22	2.5	23	97	2	105	62	8	10	17	1.52
955332--955406	20	3.8	20	80	3	80	40	12	13	34	1.81
955329--955406	40	2.0	39	87	2	111	39	12	12	34	1.82
955942--956974	32	32.3	32	97	0	1897	13	18	36	31	1.90
956967--957033	27	2.5	27	88	7	100	28	14	34	22	1.94
956996--957072	39	2.0	39	92	0	127	27	18	35	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957034--957990	27	35.0	27	92	2	1545	28	14	34	22	1.94
957034--957990	82	11.7	81	92	2	1545	28	14	34	22	1.94
965511--965566	22	2.5	23	97	2	105	62	8	10	17	1.52
966477--966551	20	3.8	20	80	3	80	40	12	13	34	1.81
966474--966551	40	2.0	39	87	2	111	39	12	12	34	1.82
967797--967832	2	18.0	2	100	0	72	50	0	0	50	1.00
968803--968837	2	18.5	2	88	11	56	48	0	0	51	1.00
969903--969951	21	2.3	21	85	0	71	18	4	0	77	0.92
970385--970423	21	1.9	19	85	10	51	58	2	2	35	1.25
970537--970660	9	13.8	9	67	16	51	54	1	1	41	1.19
970582--970615	10	3.4	10	95	0	59	76	0	0	23	0.79
970582--970615	15	2.3	15	94	0	59	76	0	0	23	0.79
972566--972648	19	4.3	19	76	14	73	38	0	0	61	0.96
972566--972658	40	2.3	40	83	10	111	41	0	0	58	0.98
972696--972762	33	2.0	33	85	0	89	49	10	4	35	1.57
973168--973217	23	2.1	23	85	3	64	40	0	2	58	1.10
973396--973434	18	2.2	18	86	4	53	51	2	0	46	1.14
973531--973567	20	1.9	20	88	5	58	45	0	0	54	1.00
973516--973571	25	2.1	26	83	9	69	51	0	0	48	1.00
973849--973881	3	10.7	3	93	6	57	69	0	0	30	0.88
977122--977167	24	2.0	23	86	4	65	41	2	2	54	1.25
977603--977648	5	9.2	5	77	17	51	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977608--977641	11	2.8	13	82	17	54	67	0	0	32	0.91
977603--977648	11	4.6	10	79	17	51	65	0	0	34	0.93
978418--978450	2	16.5	2	93	0	57	51	3	45	0	1.16
978645--978673	3	9.7	3	100	0	58	31	0	0	68	0.89
978809--978872	22	2.9	21	79	13	58	43	1	0	54	1.09
979960--980051	26	3.7	26	69	8	82	45	1	5	47	1.32
983146--983222	40	1.9	40	94	0	136	33	6	7	51	1.56
983674--983720	3	16.0	3	95	4	87	68	0	0	31	0.90
984695--984729	17	2.1	16	89	5	52	65	0	0	34	0.93
985009--985051	23	1.9	22	90	4	68	39	0	2	58	1.11
987005--987086	34	2.5	33	82	5	94	35	10	7	46	1.67
989215--989248	17	1.9	18	88	5	52	35	0	0	64	0.94
989145--989332	85	2.2	85	80	8	197	41	6	3	48	1.46
989823--989889	17	3.8	17	84	7	89	19	11	4	64	1.44
990565--990630	34	1.9	34	90	6	107	56	6	7	30	1.52
992511--992554	20	2.2	20	91	0	70	40	0	4	54	1.21
995365--995443	29	2.7	30	81	11	83	44	2	0	53	1.14
995393--995471	26	3.2	24	80	8	81	41	1	1	55	1.16
996249--996282	2	17.0	2	93	0	59	52	0	0	47	1.00
996599--996638	19	2.1	20	86	9	57	55	7	0	37	1.29
999818--999859	2	22.0	2	83	9	52	42	2	2	52	1.27
1003054--1003254	52	3.9	52	92	1	323	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003243--1003267	13	1.9	13	100	0	50	36	16	16	32	1.90
1003308--1003374	33	2.0	33	88	0	98	40	14	11	32	1.83
1003330--1003354	13	1.9	13	100	0	50	32	16	16	36	1.90
1003880--1003910	13	2.4	13	94	0	53	35	16	12	35	1.87
1003864--1003930	33	2.0	32	88	11	100	35	13	17	32	1.89
1007322--1007362	22	2.0	21	86	13	59	41	4	21	31	1.74
1007494--1007518	13	1.9	13	100	0	50	32	16	16	36	1.90
1019976--1020004	13	2.2	13	100	0	58	27	13	17	41	1.87
1022476--1022532	19	2.9	19	84	2	78	31	14	19	35	1.91
1022561--1022627	33	2.0	33	86	11	93	35	11	17	34	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20