genome.fa.s119.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold119
Parameters: 2 7 7 80 10 50 1000
Length:  3173904

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  3  of  20  ( 2346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368999--369373	82	4.6	82	74	7	242	42	13	24	19	1.87
369007--369413	41	9.9	41	71	5	144	43	13	24	19	1.86
368770--369717	82	11.7	81	70	10	224	44	13	22	19	1.85
369363--369502	70	2.0	70	80	0	154	41	12	26	20	1.87
369466--369730	41	6.5	41	67	10	130	44	11	23	20	1.84
370374--370599	88	2.6	88	82	0	238	47	10	18	23	1.79
370420--370641	88	2.5	88	78	3	234	48	10	18	22	1.79
372271--372586	80	4.0	79	79	6	291	35	11	25	27	1.90
373788--373852	33	2.0	32	85	11	87	32	16	16	33	1.92
373882--373939	19	3.0	20	80	7	75	36	17	15	31	1.91
373923--373947	13	1.9	13	100	0	50	32	16	16	36	1.90
374501--374544	20	2.1	22	91	8	74	40	18	4	36	1.71
381025--381055	3	10.3	3	92	0	53	29	35	0	35	1.58
382742--382794	19	2.7	20	85	2	72	37	18	13	30	1.89
382783--382807	13	1.9	13	100	0	50	32	16	16	36	1.90
384015--384314	52	5.8	51	76	3	242	36	14	23	26	1.93
384366--384874	32	15.7	31	76	9	401	27	16	25	30	1.97
384389--384874	65	7.5	63	76	7	420	27	17	25	30	1.97
384389--384873	97	5.0	97	80	7	500	27	16	25	30	1.97
384909--385790	88	10.1	85	70	11	310	31	12	29	26	1.93
385036--385155	59	2.0	59	80	3	134	37	11	29	21	1.89
385245--385324	31	2.7	30	83	12	78	25	15	35	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385274--385386	31	3.8	30	75	16	85	24	13	34	27	1.93
385274--385386	57	1.9	59	89	5	176	24	13	34	27	1.93
385388--385466	28	2.8	29	76	3	97	29	15	29	26	1.96
385496--385567	30	2.3	32	80	9	94	41	8	26	23	1.82
385073--385546	202	2.3	200	82	6	587	29	13	31	26	1.93
384909--385796	29	30.6	29	74	9	414	31	12	29	26	1.93
392243--392422	52	3.4	53	79	10	183	35	8	26	28	1.87
392351--392503	81	1.9	81	86	8	222	32	11	27	29	1.91
398656--398740	18	4.8	18	85	4	111	32	12	15	38	1.85
398641--398738	18	5.8	16	83	11	83	35	12	14	37	1.83
398641--398740	52	1.9	52	84	8	132	35	13	14	38	1.84
399627--399677	22	2.4	21	77	6	57	37	0	1	60	1.08
399888--399924	19	2.0	18	89	5	56	56	0	0	43	0.99
400342--400379	19	2.0	20	89	5	60	63	0	0	36	0.95
400393--400487	32	3.2	28	76	19	95	51	1	0	47	1.07
400343--400471	32	3.6	34	74	22	99	55	0	0	44	1.05
400332--400459	20	6.8	19	66	27	62	54	0	0	43	1.11
400338--400464	40	3.2	38	73	22	111	55	0	0	43	1.05
404900--404930	14	2.2	14	94	0	53	61	9	0	29	1.28
406677--406715	20	2.0	20	85	10	53	7	20	10	61	1.52
411550--411861	84	3.7	84	82	3	324	49	10	19	20	1.77
411668--411823	43	3.7	42	77	6	163	48	12	19	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411639--411860	42	5.3	42	72	5	162	50	10	19	19	1.76
411545--411905	85	4.3	86	78	9	316	50	10	18	20	1.77
411545--411908	169	2.2	168	78	6	371	49	10	18	20	1.77
411943--412038	49	2.0	49	89	4	149	42	9	22	25	1.83
412127--412261	41	3.3	39	71	12	121	37	11	28	22	1.89
412174--412462	40	7.2	40	71	8	158	40	10	25	22	1.87
412058--412499	161	2.7	161	82	3	491	38	12	26	21	1.89
412058--412484	81	5.3	80	79	4	360	38	12	26	22	1.89
413204--413710	166	3.1	163	76	10	460	30	10	9	49	1.69
414905--414952	16	2.9	17	78	12	55	66	0	8	25	1.19
415074--415322	134	1.8	136	88	6	382	29	14	10	45	1.78
414989--415344	135	2.6	136	77	10	367	29	15	10	43	1.81
416878--417091	81	2.7	79	85	3	268	41	13	25	20	1.88
416897--417191	40	7.4	39	71	10	182	41	14	25	18	1.88
417259--417524	44	6.0	44	79	6	238	42	16	22	18	1.89
417269--417517	89	2.8	88	85	3	340	42	16	22	18	1.89
418165--418377	73	2.8	73	81	9	241	29	10	26	33	1.90
418809--418947	44	3.2	43	69	19	115	44	15	15	24	1.85
425294--425327	16	2.2	16	89	5	52	67	8	0	23	1.18
425679--425719	18	2.4	17	88	12	57	2	21	0	75	0.92
426606--426657	19	2.7	20	87	6	79	28	13	19	38	1.89
426606--426663	19	3.0	18	82	12	71	25	12	22	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426697--426752	20	2.8	20	88	0	76	30	14	16	39	1.88
427347--427390	21	2.1	21	83	8	54	25	31	4	38	1.76
429733--429785	21	2.6	21	82	14	67	32	15	16	35	1.90
431542--431641	31	3.2	31	87	2	137	43	11	13	33	1.78
432425--432489	27	2.4	27	77	7	71	41	9	3	46	1.51
432598--432705	27	4.0	26	78	10	101	35	7	11	46	1.67
432805--432866	27	2.3	27	80	2	72	40	8	6	45	1.59
433978--434051	20	3.7	20	80	3	69	22	13	21	41	1.88
434602--434635	13	2.6	13	100	0	68	70	11	8	8	1.34
435029--435053	13	1.9	13	100	0	50	40	16	16	28	1.89
438017--438061	20	2.3	20	84	3	56	8	13	2	75	1.13
452800--452904	52	2.0	52	94	0	183	37	19	6	37	1.78
458264--458337	22	3.3	22	69	10	69	54	22	0	22	1.45
458465--458516	18	2.9	17	85	5	68	63	26	5	3	1.34
460491--460551	27	2.3	27	94	0	104	27	1	32	37	1.67
462058--462105	24	2.0	25	83	4	62	22	8	14	54	1.67
465710--465748	13	3.0	13	92	0	69	35	17	15	30	1.91
465819--465874	21	2.6	22	94	5	96	37	8	25	28	1.86
465862--465892	10	3.1	10	90	0	53	41	6	29	22	1.78
465918--466052	53	2.5	53	87	1	207	28	17	17	37	1.92
474021--474052	16	2.1	15	94	5	55	68	0	0	31	0.90
474315--474495	58	3.1	58	75	1	157	30	12	12	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474668--474884	77	2.8	75	82	7	240	36	12	14	36	1.84
476759--476808	24	2.2	22	82	13	57	72	4	12	12	1.26
479407--479434	13	2.2	13	100	0	56	28	14	14	42	1.84
481818--481937	51	2.4	51	84	2	152	30	24	13	32	1.93
481949--482279	79	4.2	79	80	4	319	26	25	15	32	1.96
481949--482282	157	2.1	158	80	6	365	26	25	15	32	1.95
486223--486248	13	2.0	13	100	0	52	38	15	15	30	1.88
488465--488509	21	2.1	21	84	8	56	53	4	20	22	1.63
490313--490343	15	2.1	15	93	0	53	48	16	22	12	1.80
492357--492436	20	3.8	20	75	15	79	26	15	15	43	1.85
492422--492460	13	3.0	13	96	0	69	30	17	15	35	1.91
495002--495027	13	2.0	13	100	0	52	38	15	15	30	1.88
497483--497518	18	2.0	18	88	0	54	27	2	22	47	1.65
498023--498138	56	2.1	56	81	0	133	42	18	17	21	1.89
498426--498643	100	2.2	100	82	6	257	36	15	20	27	1.93
499227--499314	41	2.1	41	82	0	104	34	21	11	32	1.89
500772--501155	58	6.8	57	74	10	182	28	12	13	46	1.79
500926--501035	28	3.8	28	70	11	80	28	15	12	43	1.83
501042--501131	29	3.1	29	65	17	69	25	11	13	50	1.74
500964--501163	58	3.4	58	78	2	215	26	11	14	47	1.78
501741--501852	55	2.0	55	85	0	152	35	16	13	34	1.87
504068--504106	20	2.0	19	85	5	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504060--504122	15	4.1	15	73	20	58	52	0	0	47	1.00
504786--504891	49	2.2	49	85	0	140	37	9	21	31	1.85
504862--504980	49	2.4	49	81	0	130	38	10	20	31	1.85
516520--516560	18	2.2	19	87	12	59	63	0	2	34	1.08
517530--517556	2	13.5	2	100	0	54	51	0	0	48	1.00
517741--517776	18	1.9	19	94	5	65	27	0	0	72	0.85
517756--517789	14	2.5	14	90	4	52	26	0	0	73	0.83
518409--518453	23	1.9	24	86	4	65	37	0	0	62	0.96
518403--518481	19	4.3	19	75	20	78	37	0	0	62	0.96
518411--518474	29	2.3	28	82	12	78	40	0	0	59	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20