genome.fa.s152.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold152
Parameters: 2 7 7 80 10 50 1000
Length:  2945013

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  11  of  18  ( 2134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772657--1772892	119	2.0	119	89	3	368	36	14	11	37	1.83
1774657--1775217	31	18.0	31	81	8	541	22	28	14	33	1.94
1774657--1775165	126	4.1	126	81	8	605	23	28	14	33	1.94
1775125--1775377	126	2.0	127	87	6	363	20	32	12	33	1.90
1775157--1775438	93	3.0	93	79	14	310	19	32	12	34	1.90
1775092--1775466	33	11.7	33	80	11	370	20	33	13	33	1.90
1775245--1775466	61	3.4	61	77	12	221	19	32	12	35	1.89
1775406--1775470	34	1.9	34	90	0	103	18	35	12	33	1.88
1775475--1775675	33	6.1	33	86	4	264	29	32	17	20	1.96
1775474--1775682	100	2.1	97	87	6	298	29	33	17	20	1.95
1775475--1775675	67	3.1	65	87	4	287	29	32	17	20	1.96
1775670--1775902	48	4.8	49	85	8	282	25	26	17	30	1.97
1775721--1775858	43	3.1	43	92	5	213	25	26	18	29	1.98
1775721--1775911	91	2.0	94	87	5	271	25	24	17	32	1.97
1775812--1775963	52	2.8	53	81	4	180	25	23	15	36	1.93
1775916--1776042	67	1.9	68	85	4	177	24	24	12	38	1.90
1776854--1776878	13	1.9	13	100	0	50	36	16	16	32	1.90
1776834--1776900	33	2.0	33	88	0	98	32	11	14	40	1.83
1776941--1777002	13	5.2	13	78	21	73	32	16	14	37	1.89
1776920--1777001	34	2.4	34	100	0	164	34	17	12	36	1.87
1784391--1784416	13	2.0	13	100	0	52	38	15	15	30	1.88
1788503--1788532	15	2.0	15	93	0	51	50	16	20	13	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1788492--1788532	15	2.7	16	81	11	50	46	17	19	17	1.85
1790605--1790643	13	3.0	13	92	0	60	30	15	15	38	1.88
1790764--1790809	21	2.2	20	81	11	58	32	19	4	43	1.71
1793214--1793239	13	2.0	13	100	0	52	38	15	15	30	1.88
1801585--1801684	11	8.5	11	71	20	60	82	9	5	4	0.95
1801587--1801626	20	2.0	21	85	5	55	87	5	5	2	0.73
1801596--1801663	20	3.3	20	76	11	59	79	10	4	5	1.04
1801588--1801683	36	2.7	35	78	12	106	81	9	5	4	0.98
1803765--1803826	24	2.5	25	79	10	65	29	4	9	56	1.52
1805330--1805376	21	2.2	21	85	7	60	46	23	23	6	1.75
1810593--1810648	1	56.0	1	80	0	58	89	3	5	1	0.65
1810575--1810637	12	4.8	13	76	16	60	80	3	7	7	0.99
1810577--1810650	15	4.9	15	75	17	55	82	4	6	6	0.94
1810593--1810650	23	2.5	24	81	18	86	86	3	6	3	0.79
1812572--1812621	24	2.1	24	85	7	66	30	4	6	60	1.39
1813271--1813341	14	5.4	14	72	13	51	35	18	16	29	1.93
1813488--1813689	33	6.3	33	81	7	229	30	32	17	19	1.95
1813517--1813689	31	5.5	31	83	4	204	30	33	17	19	1.94
1813525--1813718	63	3.1	60	79	11	201	27	32	18	20	1.96
1813517--1813702	94	2.0	95	89	4	286	29	32	18	19	1.96
1813802--1813907	52	2.0	52	81	3	124	27	21	11	39	1.87
1813821--1814160	113	3.0	113	85	0	448	24	23	13	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814105--1814235	61	2.2	60	77	4	136	22	23	15	38	1.92
1814837--1814863	13	2.1	13	100	0	54	40	14	14	29	1.86
1820791--1820843	17	3.0	17	81	13	54	24	0	1	73	0.93
1820801--1820854	13	4.2	13	78	15	51	24	0	1	74	0.92
1820803--1820854	19	2.6	20	77	20	63	25	0	1	73	0.94
1822266--1822345	31	2.5	31	85	2	97	46	1	2	50	1.23
1822266--1822379	32	3.6	32	77	10	101	46	1	3	48	1.29
1822467--1822506	14	2.9	14	85	3	55	45	2	5	47	1.38
1822836--1822892	18	3.2	18	78	11	57	59	1	0	38	1.08
1822827--1822888	19	3.2	19	73	13	54	58	1	0	40	1.08
1822884--1822934	14	3.4	16	84	7	63	49	0	0	50	1.00
1822898--1822944	22	2.1	22	84	0	58	46	0	0	53	1.00
1823454--1823518	28	2.4	27	81	2	76	56	1	3	38	1.24
1826625--1826661	2	18.5	2	100	0	74	48	0	0	51	1.00
1827853--1827881	2	15.0	2	92	7	51	48	0	0	51	1.00
1828435--1828491	26	2.3	24	78	6	60	64	1	0	33	1.04
1829790--1829829	19	2.1	19	90	0	62	52	17	2	27	1.57
1830100--1830143	18	2.4	18	81	7	54	27	4	4	63	1.33
1830735--1830773	10	3.9	10	86	0	51	5	10	17	66	1.39
1830734--1830776	20	2.2	20	91	0	68	9	9	16	65	1.47
1831451--1831509	26	2.3	25	80	11	66	52	0	5	42	1.23
1831546--1831768	114	2.0	114	84	3	297	47	4	9	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835906--1836130	81	2.8	80	83	9	266	50	0	7	41	1.33
1835977--1836110	41	3.4	36	66	21	90	52	0	7	39	1.29
1836505--1836532	9	3.1	9	100	0	56	32	0	0	67	0.91
1836697--1836727	2	16.0	2	93	6	55	48	0	0	51	1.00
1837387--1837459	30	2.4	30	80	14	80	45	5	1	47	1.34
1837387--1837468	30	2.8	29	75	14	78	43	7	1	47	1.38
1838518--1838558	21	1.9	22	90	5	66	75	4	0	19	0.98
1838820--1838857	16	2.4	16	82	8	51	55	0	2	42	1.14
1840856--1840881	2	13.0	2	100	0	52	50	0	0	50	1.00
1841520--1841562	21	2.0	22	86	13	63	39	2	0	58	1.11
1841689--1841719	16	2.0	16	93	6	55	45	0	0	54	0.99
1843043--1843077	3	11.7	3	100	0	70	34	0	0	65	0.93
1845393--1845418	12	2.2	12	100	0	52	0	11	0	88	0.52
1853803--1853859	28	2.0	29	93	3	98	38	24	12	24	1.90
1854871--1855127	132	1.9	132	90	0	406	34	15	14	35	1.88
1855210--1855316	51	2.1	51	89	3	162	48	20	2	28	1.63
1865229--1865286	19	3.0	20	85	7	84	34	17	15	32	1.91
1865270--1865294	13	1.9	13	100	0	50	32	16	16	36	1.90
1865251--1865315	33	2.0	32	88	8	96	38	15	15	30	1.88
1865772--1865811	2	19.0	2	90	10	62	47	0	5	47	1.24
1871259--1871310	10	5.0	10	84	9	59	75	1	23	0	0.91
1871265--1871310	11	4.4	10	84	10	56	76	2	21	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1871265--1871310	21	2.2	21	88	0	65	76	2	21	0	0.90
1872109--1872167	15	3.9	15	74	14	50	67	0	0	32	0.91
1872183--1872440	133	1.9	134	85	3	351	32	10	12	44	1.76
1872779--1872803	10	2.5	10	100	0	50	48	0	8	44	1.32
1874368--1874885	155	3.4	151	82	6	557	38	19	18	23	1.93
1876204--1876229	11	2.4	11	100	0	52	0	0	15	84	0.62
1876543--1876571	10	3.0	10	95	5	51	68	0	0	31	0.89
1876733--1877239	164	3.1	161	77	11	503	49	9	11	30	1.70
1883952--1883984	16	2.2	15	89	10	50	42	3	0	54	1.15
1884341--1884387	22	2.3	21	85	10	62	57	14	27	0	1.38
1884339--1884380	22	1.9	22	95	0	75	57	14	28	0	1.38
1885165--1885218	16	3.4	16	84	0	63	5	38	7	48	1.55
1887350--1887380	16	2.0	16	93	6	55	51	0	0	48	1.00
1890203--1890242	8	5.0	8	84	0	53	10	37	0	52	1.35
1890523--1890560	20	1.9	20	88	0	58	39	26	5	28	1.78
1899294--1899324	9	3.4	9	100	0	62	61	0	0	38	0.96
1900072--1900270	95	2.1	92	82	4	229	41	7	18	33	1.77
1903880--1903910	13	2.4	13	94	0	53	35	12	16	35	1.87
1904572--1904655	21	4.2	21	73	11	86	28	28	1	41	1.64
1906634--1906679	23	2.0	23	83	8	58	52	21	0	26	1.47
1908214--1908265	20	2.7	20	90	3	79	26	13	21	38	1.90
1908336--1908360	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910628--1910669	22	2.0	21	86	13	61	40	0	21	38	1.53
1910799--1910846	13	3.7	13	94	0	87	35	18	14	31	1.91
1916976--1917001	13	2.0	13	100	0	52	30	15	15	38	1.88
1916956--1917019	33	2.0	32	90	3	101	26	14	20	39	1.90
1917061--1917113	20	2.6	21	82	8	65	30	16	15	37	1.90
1917101--1917125	13	1.9	13	100	0	50	36	16	16	32	1.90
1918910--1919004	49	1.9	49	91	0	154	42	14	18	24	1.88
1921304--1921342	21	2.0	19	85	14	53	41	10	12	35	1.77
1921310--1921361	20	2.5	21	90	3	79	38	7	17	36	1.78
1921409--1921564	51	3.0	51	86	2	197	30	17	12	39	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18