genome.fa.s152.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold152
Parameters: 2 7 7 80 10 50 1000
Length:  2945013

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2794763--2794788	13	2.0	13	100	0	52	30	15	15	38	1.88
2797335--2797360	13	2.0	13	100	0	52	38	15	15	30	1.88
2799561--2799751	88	2.1	88	83	6	231	36	17	4	40	1.71
2799752--2799888	68	2.0	68	84	4	177	31	13	9	45	1.75
2799833--2800247	160	2.5	164	80	4	428	35	15	6	42	1.74
2800269--2800378	38	2.8	39	79	2	123	44	9	2	43	1.50
2800648--2800686	14	2.6	15	84	12	53	58	2	0	38	1.12
2800824--2800853	14	2.1	15	93	6	53	26	0	0	73	0.84
2800865--2800908	19	2.4	19	85	11	56	20	0	4	75	0.98
2800865--2800907	18	2.4	18	81	11	52	18	0	4	76	0.95
2801779--2801820	17	2.4	18	81	18	54	52	0	0	47	1.00
2801836--2801895	26	2.3	27	82	5	79	46	0	1	51	1.10
2802620--2802646	2	13.5	2	100	0	54	51	0	0	48	1.00
2823764--2823815	13	3.5	13	73	26	50	36	17	13	32	1.89
2823772--2823836	19	3.7	19	73	23	70	38	18	12	30	1.88
2823764--2823830	32	2.1	32	97	0	125	35	17	13	32	1.89
2824716--2824785	20	3.4	20	72	14	61	41	8	12	37	1.74
2824731--2824790	20	2.9	19	80	11	66	38	10	11	40	1.75
2825596--2825833	52	4.6	51	74	4	149	35	15	23	25	1.94
2825596--2825846	104	2.4	104	78	5	258	35	16	22	25	1.94
2827099--2827151	8	6.1	8	79	16	61	13	0	3	83	0.79
2827095--2827146	20	2.5	20	87	3	77	11	0	5	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2827083--2827149	28	2.4	27	85	9	89	10	2	4	82	0.93
2839137--2839162	13	2.0	13	100	0	52	30	15	15	38	1.88
2839117--2839180	32	2.0	33	90	3	103	26	12	20	40	1.88
2839213--2839267	20	2.7	20	83	10	67	25	16	14	43	1.86
2841280--2841329	20	2.3	21	80	13	57	8	30	44	18	1.78
2841763--2841787	13	1.9	13	100	0	50	32	20	16	32	1.94
2847956--2847981	13	2.0	13	100	0	52	30	15	15	38	1.88
2847936--2847999	32	2.0	33	90	3	103	26	12	20	40	1.88
2848032--2848086	20	2.6	22	77	11	62	27	18	12	41	1.86
2851296--2851389	20	4.6	21	78	12	88	38	10	15	35	1.83
2851296--2851387	42	2.2	41	84	3	114	39	10	16	33	1.83
2851414--2851439	13	2.0	13	100	0	52	38	15	7	38	1.76
2852158--2852328	59	2.9	59	79	0	189	46	15	9	28	1.77
2853839--2853903	32	2.0	33	87	3	96	26	15	16	41	1.88
2857809--2857841	16	2.1	16	88	5	50	45	6	12	36	1.66
2862160--2862184	13	1.9	13	100	0	50	36	16	16	32	1.90
2862170--2862287	50	2.4	50	85	2	157	27	16	14	41	1.87
2862737--2862793	19	2.9	19	84	2	69	33	15	14	36	1.88
2867369--2867398	15	2.0	15	93	0	51	50	16	20	13	1.78
2867358--2867398	15	2.7	16	81	11	50	46	17	19	17	1.85
2869465--2869503	13	3.0	13	96	0	69	30	17	15	35	1.91
2869624--2869669	21	2.2	20	81	11	58	32	19	4	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2881470--2881523	20	2.7	20	88	5	74	29	14	20	35	1.93
2884467--2884565	51	1.9	50	88	8	146	27	23	12	37	1.90
2884500--2884723	79	2.8	78	79	7	247	26	25	13	33	1.94
2884580--2884854	130	2.1	130	83	5	358	27	28	12	32	1.93
2884658--2884777	51	2.4	51	84	0	159	29	29	11	30	1.92
2884467--2884894	209	2.0	209	82	2	529	27	25	11	35	1.91
2884710--2885056	79	4.4	79	82	3	403	28	27	10	32	1.91
2888547--2888603	20	2.8	21	81	2	71	43	14	14	28	1.83
2888549--2888623	20	3.7	20	78	3	69	40	16	12	32	1.84
2888664--2888721	20	2.9	20	92	0	98	31	17	10	41	1.83
2891436--2891460	13	1.9	13	100	0	50	36	16	16	32	1.90
2891416--2891481	32	2.0	33	94	2	116	34	12	16	36	1.86
2891522--2891546	13	1.9	13	100	0	50	32	16	16	36	1.90
2898894--2898925	13	2.5	13	95	5	57	87	12	0	0	0.54
2898893--2898926	12	2.6	14	86	13	54	88	11	0	0	0.52
2898892--2898928	16	2.3	17	90	9	60	89	10	0	0	0.49
2899750--2899776	9	3.0	9	100	0	54	55	22	0	22	1.44
2899870--2900412	34	17.0	34	72	17	325	20	35	13	30	1.91
2899940--2899992	27	1.9	28	92	3	90	26	33	15	24	1.95
2899938--2899999	27	2.3	27	85	2	88	22	33	12	30	1.92
2900261--2900437	27	6.0	27	73	19	147	20	34	13	31	1.92
2899878--2900443	61	9.0	61	80	10	520	20	35	13	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2900343--2900412	35	2.0	36	88	2	106	18	35	11	34	1.87
2900440--2901065	33	19.1	33	89	3	935	28	32	17	21	1.96
2899876--2900554	317	2.1	311	81	10	795	22	34	13	29	1.93
2900448--2901067	197	3.2	196	93	1	1030	28	32	17	21	1.96
2901067--2901531	43	9.9	48	78	13	459	26	25	16	31	1.97
2901062--2901531	92	5.0	92	92	2	726	26	25	16	31	1.97
2901205--2901272	22	3.1	22	62	19	52	26	25	17	30	1.97
2901432--2901535	54	1.9	55	90	2	165	25	26	13	33	1.93
2902334--2902390	13	3.9	13	76	24	60	35	14	17	33	1.90
2902314--2902411	32	3.0	32	95	1	169	35	12	16	35	1.86
2902312--2902409	19	5.8	18	70	28	81	34	12	16	36	1.86
2902452--2902476	13	1.9	13	100	0	50	32	16	16	36	1.90
2902485--2902613	52	2.5	52	96	0	240	36	17	17	28	1.93
2907974--2908017	19	2.3	19	84	7	54	72	11	13	2	1.21
2909162--2909213	20	2.6	19	78	6	59	75	0	21	3	0.97
2909764--2909797	7	4.9	7	85	0	50	85	0	2	11	0.71
2909763--2909807	10	4.5	10	83	8	56	82	0	4	13	0.82
2909763--2909808	21	2.2	20	88	7	74	82	0	4	13	0.81
2923458--2924006	62	8.9	62	84	2	656	26	24	19	28	1.99
2923458--2924009	245	2.2	245	82	2	710	26	25	19	28	1.99
2923981--2924122	32	4.4	31	78	11	135	29	26	16	27	1.97
2926906--2926930	13	1.9	13	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2926902--2926951	20	2.5	20	81	12	59	74	0	24	2	0.93
2930266--2930773	156	3.3	155	81	7	575	28	16	17	38	1.91
2934027--2934239	78	2.7	79	80	2	225	25	28	15	30	1.96
2935707--2935757	26	2.1	25	85	10	70	1	31	5	60	1.31
2935708--2935757	25	2.0	25	88	4	73	2	32	6	60	1.32
2941232--2941266	3	11.7	3	100	0	70	68	0	0	31	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!