genome.fa.s152.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold152
Parameters: 2 7 7 80 10 50 1000
Length:  2945013

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308398--308712	98	3.2	98	80	3	373	31	34	16	18	1.93
312269--313724	155	9.4	155	82	3	1475	37	21	18	22	1.94
313936--314292	128	2.8	126	93	1	599	41	12	13	31	1.82
315307--315353	10	4.2	11	82	15	60	0	25	0	74	0.82
315309--315353	11	3.9	12	81	18	60	0	24	0	75	0.80
315307--315353	23	2.0	24	91	4	78	0	25	0	74	0.82
316010--316575	165	3.4	165	80	7	592	50	7	13	27	1.69
316010--316472	170	2.8	165	84	4	572	52	7	13	26	1.67
317685--317975	151	1.9	152	83	6	376	45	11	23	19	1.83
318458--318538	43	1.9	43	84	2	110	30	22	25	20	1.98
318298--318771	42	11.2	42	67	10	142	33	19	28	18	1.96
318801--319847	43	24.3	44	78	7	559	37	17	28	16	1.91
318878--319847	86	11.3	85	78	7	804	37	17	28	16	1.91
318796--319847	129	8.1	128	77	6	820	37	17	28	16	1.91
320069--320159	43	2.1	43	83	2	112	36	19	28	15	1.92
320424--320583	60	2.6	61	82	3	198	31	16	27	24	1.97
323497--323551	4	13.8	4	92	0	92	72	0	3	23	1.00
325677--326228	79	7.0	78	82	3	620	33	14	24	27	1.94
325667--326228	237	2.4	238	85	1	743	34	14	24	26	1.94
328036--328061	13	2.0	13	100	0	52	30	15	15	38	1.88
328016--328079	33	2.0	32	90	3	101	26	14	20	39	1.90
328161--328185	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328780--328811	16	2.0	16	93	0	55	40	18	6	34	1.76
330172--330214	20	2.0	22	82	8	54	6	30	44	18	1.76
330597--330647	13	3.9	13	94	0	84	41	15	11	31	1.83
330844--330874	8	3.8	8	95	4	53	61	25	0	12	1.32
336800--336863	33	2.0	32	87	3	92	26	15	18	39	1.91
338545--338598	20	2.7	20	79	0	63	42	11	14	31	1.81
342018--342140	61	2.0	61	100	0	246	35	14	25	24	1.93
342030--342175	61	2.4	61	88	2	204	37	16	22	23	1.93
342177--342252	27	2.6	31	73	23	76	19	15	36	27	1.93
342250--342764	28	17.9	28	76	9	396	23	16	29	30	1.96
342234--342764	56	9.2	56	79	7	460	23	16	29	30	1.96
342234--342770	86	6.2	86	82	6	525	23	15	30	30	1.96
353776--353840	19	3.8	18	75	24	77	32	12	16	38	1.86
353778--353845	32	2.1	32	97	0	127	33	11	17	36	1.86
353797--353821	13	1.9	13	100	0	50	36	16	16	32	1.90
353874--354071	103	1.9	104	92	1	335	37	19	15	27	1.91
353871--354072	52	3.9	52	92	1	325	37	18	15	28	1.91
367911--368009	25	4.1	23	79	10	99	84	10	3	2	0.80
367911--368024	30	3.8	30	80	16	112	83	12	2	1	0.83
367911--368000	1	90.0	1	73	0	63	85	8	3	2	0.79
367948--368024	25	3.2	25	77	16	83	84	14	0	1	0.69
367956--368021	8	7.9	9	83	14	56	83	15	0	1	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369466--369705	28	8.4	28	80	6	266	33	31	16	19	1.94
369466--369705	58	4.2	58	88	1	340	33	31	16	19	1.94
369722--369907	49	3.8	49	82	2	223	24	26	18	30	1.98
369714--369916	98	2.1	94	87	4	280	23	27	18	31	1.97
370628--370692	19	3.8	18	71	24	68	33	12	15	38	1.85
370630--370697	32	2.1	32	94	0	118	35	11	16	36	1.85
370745--370769	13	1.9	13	100	0	50	32	16	16	36	1.90
370778--370906	52	2.5	52	94	0	231	36	18	16	28	1.93
377789--377814	13	2.0	13	100	0	52	30	15	15	38	1.88
377853--377928	21	3.7	21	78	3	91	30	17	10	42	1.82
377874--377946	20	3.6	20	81	3	101	31	19	13	35	1.91
377853--377946	41	2.3	41	96	0	170	30	18	11	39	1.86
380371--380408	13	2.9	13	96	0	67	31	15	18	34	1.92
382431--382461	15	2.1	15	93	0	53	12	22	16	48	1.80
384264--384308	21	2.1	21	84	8	56	22	20	4	53	1.63
386523--386548	13	2.0	13	100	0	52	30	15	15	38	1.88
386587--386662	21	3.7	21	80	3	100	28	17	11	42	1.84
386608--386680	20	3.6	20	81	3	101	31	19	13	35	1.91
386587--386680	41	2.3	41	98	0	179	29	18	12	39	1.88
387856--387970	51	2.3	50	84	1	149	45	11	13	30	1.78
391370--391444	20	3.8	20	80	3	80	40	12	13	34	1.81
391367--391444	40	2.0	39	87	2	111	39	12	12	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392005--392460	32	14.3	32	92	0	707	19	18	32	30	1.95
392468--393422	27	35.0	27	90	2	1439	28	14	34	23	1.94
392468--393422	137	7.0	135	90	2	1439	28	14	34	23	1.94
392468--393422	164	5.8	162	90	2	1430	28	14	34	23	1.94
394440--394465	9	2.9	9	100	0	52	0	0	7	92	0.39
394742--394793	23	2.2	24	82	3	61	5	11	11	71	1.31
396889--396955	33	2.0	33	88	0	98	34	11	13	40	1.81
396909--396933	13	1.9	13	100	0	50	36	16	16	32	1.90
396996--397140	52	2.8	52	86	9	208	33	18	17	30	1.94
405483--405557	20	3.8	20	80	3	80	40	12	13	34	1.81
405480--405557	40	2.0	39	87	2	111	39	12	12	34	1.82
407653--408930	155	8.3	153	78	6	1098	38	21	18	21	1.94
409171--409915	128	5.8	128	91	1	1176	41	12	12	33	1.81
411006--411052	10	4.2	11	76	15	51	0	23	0	76	0.78
411011--411035	13	1.9	13	100	0	50	0	28	0	72	0.86
411002--411041	15	2.6	15	84	4	53	0	22	0	77	0.77
411687--412132	166	2.7	165	83	3	540	52	6	12	28	1.64
413255--413477	83	2.7	80	73	12	193	45	15	22	16	1.85
413972--414121	42	3.5	43	75	6	135	34	20	26	19	1.96
414061--414472	85	4.9	85	70	7	257	30	19	30	19	1.97
414227--414401	42	4.1	42	71	8	142	29	18	31	20	1.96
414469--415611	43	26.6	43	79	5	961	35	18	28	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415624--415725	42	2.4	42	83	3	125	35	21	31	11	1.90
415728--415811	42	2.0	42	80	0	96	34	15	30	19	1.93
416062--416231	87	2.0	86	81	6	200	42	14	22	21	1.88
417148--417309	88	1.8	88	81	5	202	44	12	20	21	1.85
417653--417856	111	1.8	112	79	3	241	39	15	17	27	1.89
418128--418161	17	2.0	17	88	11	52	0	14	2	82	0.79
420594--420620	13	2.1	13	100	0	54	29	14	14	40	1.86
420575--420639	32	2.0	32	90	3	103	27	16	15	40	1.89
420604--420660	19	2.9	19	89	2	87	31	15	17	35	1.92
420626--420785	63	2.5	63	95	2	286	31	18	16	32	1.94
422842--422900	21	2.8	21	86	0	73	61	0	22	16	1.35
424213--424237	13	1.9	13	100	0	50	40	20	8	32	1.81
426096--426122	13	2.1	13	100	0	54	29	14	14	40	1.86
426172--426240	33	2.1	32	84	10	86	33	11	21	33	1.90
426677--426768	32	2.8	33	81	15	109	29	13	23	33	1.92
428829--430365	155	9.9	154	81	5	1499	36	21	19	22	1.95
428770--430365	465	3.4	461	81	6	1743	36	21	19	22	1.95
430605--431100	128	3.9	128	93	0	823	42	13	11	32	1.80
430605--431100	255	1.9	256	92	1	843	42	13	11	32	1.80
432181--432228	12	3.9	11	76	23	51	0	25	0	75	0.81
432180--432229	14	3.6	14	81	5	57	0	24	0	76	0.80
432788--433328	166	3.3	167	81	7	475	50	8	13	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432866--433405	166	3.3	165	81	6	583	50	7	14	27	1.70
436066--436376	80	3.9	80	83	4	358	33	9	27	28	1.89
438594--438650	20	2.8	21	83	2	71	42	12	12	33	1.80
440385--440430	23	2.0	23	83	8	58	34	0	4	60	1.16
441100--441496	79	5.0	78	82	2	386	26	22	13	37	1.91
444681--445303	79	7.9	79	82	5	623	33	12	25	29	1.92
444636--445292	158	4.2	158	82	4	711	33	12	24	29	1.92
444717--445292	315	1.8	315	82	2	753	33	12	24	28	1.93
448321--448455	35	3.7	35	71	13	112	38	17	25	18	1.92
448317--448496	75	2.4	77	85	2	240	39	17	24	18	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18