genome.fa.s152.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold152
Parameters: 2 7 7 80 10 50 1000
Length:  2945013

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  7  of  18  ( 2134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097307--1097380	33	2.2	33	90	0	112	12	41	0	45	1.41
1101646--1101777	42	3.1	42	89	2	185	8	44	2	44	1.46
1102514--1102552	15	2.6	15	83	0	51	0	15	2	82	0.79
1103469--1103514	24	1.9	24	100	0	92	26	21	15	36	1.93
1105174--1105255	29	2.8	30	88	5	114	20	12	10	56	1.66
1106224--1106290	32	2.1	32	100	0	134	40	2	25	31	1.71
1112324--1112424	33	3.1	33	89	0	139	10	45	0	42	1.46
1112352--1112414	12	5.5	11	80	19	76	12	47	0	39	1.42
1112352--1112415	21	2.8	24	77	22	75	12	46	0	40	1.42
1114228--1114288	9	7.1	9	76	14	58	14	40	0	44	1.46
1114221--1114300	42	1.9	42	94	0	142	15	38	0	46	1.46
1116431--1116523	44	2.1	44	91	0	150	31	11	21	35	1.90
1118347--1118375	14	2.1	14	100	0	58	44	0	20	34	1.52
1118615--1118893	152	1.8	152	80	5	339	31	16	11	40	1.85
1119534--1119963	158	2.7	157	73	12	369	29	18	14	37	1.90
1119709--1120289	316	1.8	317	79	5	681	30	19	13	36	1.90
1120358--1120594	129	1.8	129	83	1	314	31	18	13	37	1.89
1120487--1121533	159	6.6	158	73	9	551	30	18	13	37	1.89
1120525--1121186	317	2.1	318	80	6	743	30	18	13	37	1.90
1119824--1121208	764	1.8	764	82	5	1771	30	18	13	37	1.90
1121809--1121910	51	2.0	51	88	3	152	23	7	20	48	1.76
1123976--1124048	12	6.6	12	72	15	52	39	1	43	15	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1123997--1124028	9	3.6	9	91	0	55	43	0	43	12	1.42
1123967--1124048	42	2.0	42	90	0	128	42	1	42	13	1.51
1124006--1124076	33	2.2	33	89	0	106	40	1	45	12	1.51
1128926--1128991	28	2.4	28	94	0	114	13	19	13	53	1.73
1134739--1134798	21	2.9	21	73	7	68	10	43	1	45	1.47
1134739--1134876	42	3.6	38	79	17	142	12	44	0	42	1.47
1134768--1134861	9	11.1	9	68	13	65	13	43	0	42	1.44
1134776--1134852	33	2.3	33	100	0	154	14	45	0	40	1.45
1134774--1134882	42	2.5	42	88	7	148	13	44	0	41	1.44
1134739--1134882	75	1.9	75	88	5	220	12	43	0	43	1.47
1161201--1161235	18	1.9	18	88	0	52	11	40	0	48	1.39
1161220--1161277	9	6.8	9	69	11	50	13	41	0	44	1.44
1161225--1161299	12	6.8	11	75	15	50	13	42	1	42	1.52
1161192--1161310	42	2.8	42	88	0	157	10	41	1	46	1.49
1161211--1161304	24	4.1	23	72	19	81	12	39	1	46	1.49
1164070--1164184	51	2.3	51	90	1	187	28	14	11	45	1.80
1170313--1170398	23	3.9	23	73	8	81	16	10	4	68	1.35
1172687--1172737	20	2.6	20	81	3	68	37	13	17	31	1.89
1181477--1181501	13	1.9	13	100	0	50	32	16	20	32	1.94
1181457--1181521	32	2.0	33	85	8	89	40	15	16	27	1.89
1183087--1183298	97	2.2	97	81	0	244	33	13	23	29	1.93
1190056--1190131	20	3.8	19	76	10	62	36	13	15	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1191263--1191391	56	2.2	59	81	10	151	25	14	27	31	1.95
1191263--1191478	29	7.5	28	78	8	184	26	14	28	30	1.95
1192077--1192147	13	5.5	12	75	14	54	35	18	12	33	1.89
1198193--1198302	55	2.0	55	100	0	220	25	20	16	38	1.92
1200034--1200082	8	5.9	8	79	15	55	81	2	14	2	0.87
1200040--1200082	17	2.6	17	88	3	61	83	2	11	2	0.83
1205146--1205221	20	3.8	20	83	0	98	42	7	11	38	1.71
1206106--1206191	29	2.9	30	72	16	79	16	23	30	30	1.96
1206105--1206191	31	2.9	28	73	10	68	16	22	31	29	1.96
1206180--1206784	28	21.6	28	82	6	681	24	17	29	29	1.97
1206793--1206866	13	5.6	13	72	13	62	36	17	12	33	1.87
1208073--1208115	19	2.3	19	88	8	61	0	2	16	81	0.79
1208074--1208119	24	1.9	24	82	8	58	0	2	15	82	0.76
1208080--1208126	23	2.1	22	84	4	58	0	4	12	82	0.80
1214080--1214124	15	3.0	15	76	0	54	15	0	42	42	1.47
1232723--1232798	32	2.3	32	80	6	82	6	13	9	71	1.31
1232723--1232800	31	2.4	31	76	19	79	6	12	8	71	1.29
1232859--1232907	26	2.0	24	84	8	62	14	14	8	63	1.52
1233294--1233327	12	2.8	12	90	0	59	41	14	23	20	1.89
1239251--1239298	21	2.3	21	92	0	78	6	12	35	45	1.67
1243636--1243790	81	1.9	83	89	5	244	26	28	12	32	1.93
1244444--1244781	46	7.4	46	76	3	218	25	23	9	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1244416--1244750	92	3.7	92	79	2	280	24	24	10	40	1.86
1244436--1244785	138	2.5	138	79	3	384	25	24	9	40	1.85
1244844--1245067	85	2.7	84	79	4	245	19	22	12	45	1.84
1246181--1246552	166	2.2	166	81	6	414	32	12	8	46	1.72
1247049--1247094	16	2.8	16	90	6	65	86	0	13	0	0.56
1247049--1247087	8	4.8	8	90	3	60	87	0	12	0	0.55
1247980--1248275	142	2.1	142	81	5	339	35	10	11	42	1.77
1249815--1249919	29	3.8	28	83	7	142	17	7	12	62	1.51
1251513--1251922	160	2.6	160	75	9	388	42	12	15	29	1.84
1252223--1252858	159	4.0	158	73	9	454	37	12	19	31	1.88
1254020--1254076	19	2.9	19	87	5	87	35	17	15	31	1.92
1254061--1254087	13	2.1	13	100	0	54	40	14	14	29	1.86
1256782--1256934	61	2.8	50	71	21	135	43	9	16	29	1.80
1256843--1256959	51	2.3	51	88	1	164	40	7	21	30	1.81
1256897--1257222	79	4.2	79	81	4	331	41	11	19	27	1.86
1256897--1257225	157	2.1	157	81	4	378	40	11	19	27	1.87
1260483--1260511	14	2.1	14	100	0	58	44	0	27	27	1.54
1264334--1264386	23	2.2	24	80	3	63	3	16	11	67	1.35
1269373--1269482	51	2.2	49	84	7	150	46	10	17	26	1.79
1269306--1269581	130	2.1	129	85	2	374	39	11	20	28	1.87
1269227--1269451	79	2.8	78	87	4	308	37	11	22	28	1.89
1269388--1269499	51	2.2	51	83	3	154	44	9	16	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1269443--1270169	79	9.2	79	78	6	681	40	12	19	28	1.87
1269234--1269659	209	2.0	207	82	6	520	40	11	19	28	1.86
1269443--1270169	157	4.6	159	78	6	737	40	12	19	28	1.87
1269432--1270172	236	3.1	235	84	4	911	40	12	19	28	1.87
1272514--1272630	50	2.3	51	88	4	166	41	13	15	29	1.85
1272667--1272740	21	3.6	20	83	3	67	31	18	10	39	1.86
1272695--1272740	21	2.2	20	92	3	74	30	19	10	39	1.86
1277090--1277422	159	2.1	159	81	5	370	39	13	17	30	1.87
1277967--1278685	158	4.6	153	77	10	543	38	12	17	32	1.86
1278117--1278726	158	3.9	159	81	7	604	37	12	17	31	1.88
1278117--1278724	316	1.9	311	82	5	760	37	12	17	31	1.88
1278994--1279629	159	4.0	156	76	9	497	38	11	18	32	1.86
1279071--1279496	158	2.7	157	78	8	452	39	12	18	30	1.87
1281083--1281175	19	4.8	20	86	4	136	38	13	17	30	1.89
1281084--1281213	59	2.2	59	85	8	167	38	13	16	31	1.87
1281083--1281175	39	2.4	39	100	0	186	38	13	17	30	1.89
1282156--1282187	15	2.1	15	94	0	55	28	34	15	21	1.94
1291195--1291267	20	3.7	19	87	7	85	38	17	16	27	1.91
1291196--1291286	20	4.6	19	82	5	74	36	15	17	30	1.91
1291612--1292477	159	5.5	157	76	7	586	40	12	18	29	1.87
1291789--1292477	319	2.2	316	79	6	714	40	12	18	29	1.87
1295166--1295204	5	7.6	5	85	2	51	17	2	5	74	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1297670--1297717	24	2.0	24	95	0	87	43	8	22	25	1.81
1297780--1297844	33	2.0	33	85	8	89	40	12	12	35	1.80
1298154--1298207	19	2.8	20	88	2	83	38	14	16	29	1.89
1298154--1298224	20	3.6	19	84	7	72	39	14	16	29	1.88
1298835--1298876	21	2.0	21	90	0	66	33	28	4	33	1.78
1308392--1308611	69	3.2	68	88	3	325	40	10	18	30	1.85
1308561--1308822	97	2.7	97	91	2	427	33	11	26	29	1.91
1310896--1310927	8	3.9	8	95	4	55	0	9	3	87	0.64
1311164--1311196	14	2.3	15	89	5	50	18	0	15	66	1.25
1311141--1311221	8	10.9	8	75	9	50	18	1	8	71	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18