genome.fa.s152.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold152
Parameters: 2 7 7 80 10 50 1000
Length:  2945013

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  16  of  18  ( 2134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2517968--2518051	32	2.6	32	92	0	132	38	15	10	35	1.82
2518097--2518144	21	2.3	22	78	10	64	35	16	16	31	1.92
2518971--2519009	17	2.2	18	86	13	55	71	2	0	25	0.98
2518953--2518995	22	1.9	23	85	4	61	69	0	2	27	1.00
2518962--2519009	22	2.2	22	81	7	53	70	2	2	25	1.09
2519219--2519301	24	3.3	24	76	14	78	57	1	1	39	1.14
2519241--2519279	13	3.0	13	84	0	60	56	0	0	43	0.99
2519420--2519450	15	2.1	15	93	0	53	48	0	0	51	1.00
2521451--2521475	13	1.9	13	100	0	50	36	16	16	32	1.90
2521463--2521513	19	2.7	19	93	0	84	35	11	17	35	1.87
2521431--2521494	32	2.0	33	90	3	103	35	10	18	34	1.86
2521556--2521580	13	1.9	13	100	0	50	32	16	16	36	1.90
2521569--2521769	52	3.9	52	94	1	341	32	19	16	30	1.95
2527272--2527395	52	2.4	52	90	1	187	29	17	17	35	1.93
2527279--2527415	52	2.7	52	84	5	163	32	17	17	32	1.93
2527404--2527428	13	1.9	13	100	0	50	36	16	16	32	1.90
2527499--2527523	13	1.9	13	100	0	50	32	16	16	36	1.90
2528456--2528509	20	2.7	20	91	2	81	33	12	20	33	1.91
2533846--2533887	2	21.0	2	100	0	84	0	0	50	50	1.00
2533977--2534001	2	12.5	2	100	0	50	52	0	0	48	1.00
2535506--2535533	2	14.0	2	100	0	56	0	0	50	50	1.00
2535623--2535653	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2537498--2537555	20	2.9	21	76	5	66	27	13	12	46	1.79
2539725--2539755	2	15.5	2	100	0	62	51	0	0	48	1.00
2542794--2542821	2	14.0	2	100	0	56	0	0	50	50	1.00
2544785--2544842	20	2.9	21	76	5	66	25	12	13	48	1.77
2550068--2550097	2	15.0	2	100	0	60	0	0	50	50	1.00
2553231--2553262	15	2.0	17	88	11	50	34	6	6	53	1.51
2555854--2555902	20	2.4	19	77	12	53	28	14	16	40	1.87
2557284--2557621	79	4.3	79	82	5	348	32	15	26	25	1.95
2557573--2557646	28	2.6	29	83	12	100	27	20	29	22	1.98
2557284--2557621	158	2.1	157	83	5	407	32	15	26	25	1.95
2559980--2560054	20	3.8	20	96	0	132	45	10	14	29	1.79
2560709--2560816	41	2.6	41	83	4	137	43	13	22	20	1.87
2560644--2560816	84	2.1	83	79	9	183	39	13	24	22	1.90
2560720--2560996	80	3.4	84	78	9	284	38	12	26	21	1.90
2560963--2561732	61	12.6	62	85	4	948	29	18	26	25	1.98
2567003--2567052	19	2.6	19	96	0	91	32	12	18	38	1.87
2567086--2567136	20	2.5	20	87	6	68	31	17	11	39	1.86
2581067--2581182	6	18.7	6	79	14	103	86	13	0	0	0.58
2581065--2581182	26	4.5	26	85	10	145	85	14	0	0	0.59
2581067--2581182	32	3.7	29	83	12	133	86	13	0	0	0.58
2581067--2581164	1	98.0	1	77	0	97	88	11	0	0	0.51
2582616--2582828	28	7.6	28	86	1	293	29	30	15	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2582613--2582858	56	4.4	56	84	3	291	31	29	15	23	1.95
2582616--2582811	84	2.3	84	93	0	329	28	29	17	25	1.97
2582759--2582884	55	2.2	57	78	12	127	35	28	14	21	1.92
2582836--2582894	31	2.0	29	84	12	68	33	27	16	22	1.95
2582906--2583244	49	6.8	49	82	3	327	23	28	17	30	1.97
2582906--2583289	101	3.9	98	79	6	373	23	27	17	30	1.97
2584034--2584083	19	2.6	19	90	6	75	32	12	18	38	1.87
2584641--2585258	43	12.7	50	74	13	488	32	18	25	23	1.97
2584688--2585257	96	5.9	96	90	2	805	32	18	25	23	1.97
2585264--2585456	32	6.0	32	84	6	230	22	17	30	30	1.96
2585264--2585456	65	3.0	64	84	6	246	22	17	30	30	1.96
2585266--2585448	97	1.9	98	86	5	264	21	18	29	31	1.96
2585458--2585760	34	9.3	33	73	13	245	35	11	31	20	1.89
2585458--2585814	61	5.5	68	85	8	403	36	12	30	21	1.90
2585524--2585644	27	4.2	27	76	13	107	31	12	35	20	1.90
2585665--2585838	34	5.3	32	77	10	104	35	13	28	23	1.92
2585713--2585840	31	4.1	31	75	18	113	35	14	25	23	1.93
2594058--2594186	52	2.5	52	92	0	222	27	18	19	34	1.95
2594058--2594206	52	2.9	50	82	7	174	28	18	19	33	1.95
2594272--2594333	19	3.7	18	72	28	64	37	17	12	32	1.88
2594290--2594314	12	2.1	12	100	0	50	36	16	16	32	1.90
2594265--2594348	31	2.7	32	90	3	143	39	16	11	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2598714--2598738	4	6.2	4	100	0	50	76	0	0	24	0.80
2600517--2600593	28	2.8	28	88	4	102	27	19	29	23	1.98
2604886--2604975	17	4.9	18	70	15	60	33	2	1	63	1.14
2604961--2605014	10	5.0	11	72	18	51	37	0	1	61	1.07
2606529--2606756	79	2.9	78	76	8	237	32	16	25	25	1.96
2606688--2606797	51	2.2	51	83	3	132	31	11	28	28	1.92
2606795--2606849	28	2.0	27	82	13	67	29	20	29	21	1.98
2606811--2606865	28	2.0	28	89	3	85	30	20	29	20	1.97
2606739--2607082	109	3.2	108	85	4	464	33	16	25	25	1.96
2607011--2607107	28	3.5	28	84	8	119	29	18	26	24	1.98
2607095--2607263	51	3.3	51	80	4	189	33	13	23	30	1.92
2610238--2610273	18	2.1	18	89	5	56	61	5	0	33	1.19
2610639--2610670	7	4.6	7	92	0	55	71	0	28	0	0.86
2610929--2610992	17	3.9	17	74	13	55	59	0	0	40	0.97
2613645--2613680	2	18.0	2	100	0	72	50	0	0	50	1.00
2618968--2619011	21	2.1	21	82	0	52	40	4	15	38	1.68
2620841--2620929	39	2.3	40	84	7	112	47	0	1	51	1.08
2620920--2620965	20	2.3	20	80	0	56	54	0	0	45	0.99
2623918--2623985	29	2.3	29	84	2	82	45	0	4	50	1.22
2624134--2624197	10	6.9	9	75	22	53	56	0	3	40	1.15
2624128--2624175	21	2.3	22	82	10	64	50	0	2	47	1.12
2624310--2624364	21	2.8	19	75	8	58	54	3	1	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2624125--2624671	173	3.2	168	82	5	549	42	6	6	44	1.54
2624946--2625393	174	2.6	164	78	11	451	43	5	7	42	1.57
2625306--2625355	22	2.3	21	80	10	55	44	2	4	50	1.32
2626135--2626199	32	2.0	33	87	3	96	30	13	12	43	1.81
2626250--2626314	33	2.0	33	87	6	96	35	16	16	30	1.92
2626270--2626294	13	1.9	13	100	0	50	36	16	16	32	1.90
2627354--2627428	34	2.5	27	72	25	78	37	9	34	18	1.83
2627360--2627425	34	1.9	34	93	0	114	36	10	33	19	1.86
2632521--2632547	13	2.1	13	100	0	54	29	14	14	40	1.86
2635021--2635081	20	3.1	19	79	6	68	31	13	16	39	1.87
2635109--2635195	20	4.7	20	74	18	89	36	14	14	33	1.88
2635130--2635194	33	2.0	33	93	0	112	40	13	13	32	1.85
2636210--2636320	53	2.1	54	98	1	215	36	4	14	45	1.65
2639786--2639839	20	2.7	20	85	8	74	38	9	18	33	1.83
2640863--2640901	21	1.9	21	89	5	62	20	23	12	43	1.86
2653420--2653819	142	2.8	139	84	5	502	42	10	9	38	1.70
2654546--2654604	14	3.9	14	72	20	55	0	23	0	76	0.79
2654562--2654597	10	3.5	10	88	7	54	0	19	0	80	0.71
2654556--2654603	10	4.5	10	76	23	53	0	22	0	77	0.78
2654546--2654604	12	5.0	12	76	19	70	0	23	0	76	0.79
2655037--2655981	153	6.2	153	82	5	1022	50	8	7	33	1.61
2655170--2656076	153	5.9	151	81	7	656	50	8	7	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2656690--2656722	16	2.0	17	88	5	50	45	3	0	51	1.16
2662714--2662761	17	3.1	16	79	11	55	75	6	0	18	1.01
2662832--2662880	19	2.7	18	87	6	71	20	24	10	44	1.82
2664807--2664932	64	2.0	64	92	3	209	30	17	10	41	1.83
2665991--2666038	19	2.6	19	87	9	64	85	4	6	4	0.83
2665966--2666033	27	2.4	29	80	7	86	76	5	10	7	1.15
2667284--2667385	32	3.3	31	83	6	125	24	26	12	36	1.91
2667389--2667612	61	3.7	60	72	16	208	22	28	9	38	1.86
2667383--2667873	27	15.6	32	68	17	199	22	29	10	37	1.88
2667488--2667737	93	2.7	92	81	5	272	22	30	9	37	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18