genome.fa.s152.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold152
Parameters: 2 7 7 80 10 50 1000
Length:  2945013

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  4  of  18  ( 2134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448427--448533	44	2.5	43	81	6	119	41	18	22	17	1.91
448533--450102	61	26.0	60	86	3	1891	25	18	28	26	1.98
449042--449132	30	3.1	30	63	15	80	28	20	25	25	1.99
448505--450100	242	6.6	242	88	1	2168	26	18	28	26	1.98
463473--464141	231	2.9	230	82	4	734	33	13	24	28	1.93
463471--464138	79	8.5	78	79	5	650	33	13	24	28	1.93
472439--472473	14	2.5	13	86	13	52	88	0	2	8	0.61
472439--472473	18	1.9	18	88	0	52	88	0	2	8	0.61
473441--474322	61	14.3	61	80	5	855	26	24	16	32	1.96
473441--474320	245	3.6	243	82	7	922	26	24	16	32	1.96
473468--474211	306	2.4	306	93	0	1249	26	24	16	33	1.96
474924--474997	20	3.6	21	83	7	82	40	10	16	32	1.83
478251--478315	4	15.8	4	78	15	62	72	3	24	0	0.99
478907--478948	15	2.9	15	82	6	52	66	0	30	2	1.04
478908--478971	32	2.0	31	84	3	83	71	1	25	1	1.03
479926--479996	11	6.8	11	73	12	60	28	0	4	67	1.09
480478--480538	20	3.2	20	71	15	56	40	3	6	49	1.45
480564--480596	8	4.1	8	85	14	50	24	0	0	75	0.80
480560--480647	22	3.9	23	72	12	58	28	2	1	68	1.09
480743--480787	15	2.9	15	84	12	56	46	0	2	51	1.13
480984--481079	29	3.2	29	73	10	86	39	10	3	46	1.54
481198--481237	21	1.9	21	90	10	64	37	2	2	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481317--481360	14	3.2	14	77	6	54	52	0	0	47	1.00
481397--481439	21	2.2	19	87	8	59	81	0	0	18	0.69
481397--481439	20	2.1	20	91	4	68	81	0	0	18	0.69
481407--481441	18	1.9	18	94	0	61	80	0	0	20	0.72
481598--481661	25	2.6	25	80	12	69	59	0	3	37	1.13
481841--481887	15	2.9	16	84	12	60	63	0	0	36	0.94
482544--482576	17	1.9	17	88	11	50	18	33	15	33	1.92
485311--485351	20	2.0	20	100	0	82	26	24	24	24	2.00
486044--486099	26	2.2	26	81	12	62	62	5	1	30	1.28
488009--488088	27	3.0	27	73	0	88	48	20	5	26	1.69
489907--489948	21	2.0	21	85	0	57	19	28	21	30	1.97
490762--490788	13	2.1	13	100	0	54	40	14	14	29	1.86
490817--490873	19	2.9	19	89	5	78	35	17	15	31	1.92
490858--490884	13	2.1	13	100	0	54	40	14	14	29	1.86
490839--490903	32	2.0	33	87	3	96	41	16	15	26	1.88
491439--491477	19	2.1	19	95	0	69	28	35	2	33	1.71
493286--493326	13	3.2	13	89	0	64	41	14	12	31	1.83
499506--499569	13	5.4	13	73	21	59	34	14	15	35	1.88
499486--499585	33	3.0	33	92	5	159	33	17	14	36	1.89
499519--499584	20	3.7	20	73	26	83	33	18	15	33	1.92
499635--499659	13	1.9	13	100	0	50	32	16	16	36	1.90
499616--499681	33	2.0	32	91	2	105	36	16	16	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502435--502486	27	1.9	27	92	0	86	44	25	11	19	1.84
503849--504078	29	7.9	29	73	10	175	35	4	20	39	1.73
504329--504593	142	1.9	142	89	3	417	23	18	18	39	1.92
504812--504874	3	21.7	3	93	6	112	30	0	0	69	0.88
516140--516169	13	2.3	13	94	0	51	36	10	16	36	1.82
516215--516305	20	4.6	19	80	13	96	36	14	18	30	1.91
521629--522285	333	2.0	332	89	1	1012	31	20	14	33	1.92
525397--525422	13	2.0	13	100	0	52	38	7	15	38	1.76
525474--525529	19	2.9	19	89	2	85	33	14	19	32	1.92
526287--526489	102	2.0	102	96	0	370	14	18	14	51	1.76
526503--526536	12	2.8	12	95	0	59	44	8	26	20	1.81
526530--526718	57	3.1	57	84	10	252	42	16	18	21	1.89
526596--526721	67	1.9	67	91	0	207	42	18	17	21	1.89
526811--526835	13	1.9	13	100	0	50	28	0	0	72	0.86
530423--530578	32	4.9	32	87	3	192	55	18	16	9	1.68
530537--530620	42	2.0	42	88	0	123	63	16	14	5	1.49
531524--531736	67	3.2	66	71	9	205	19	18	18	43	1.88
531560--531907	67	5.2	66	75	9	231	17	21	18	43	1.88
531523--531770	135	1.8	135	92	1	417	18	18	19	43	1.88
531510--531934	135	3.2	134	80	5	380	18	20	17	43	1.89
531707--531934	67	3.4	67	83	3	244	17	22	17	42	1.89
531766--531934	32	5.1	32	68	16	110	17	23	17	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531797--531909	36	3.3	34	71	13	106	17	23	18	39	1.92
531966--532115	66	2.3	67	85	1	194	16	25	18	40	1.91
531768--532228	178	2.6	179	80	2	525	17	24	17	40	1.90
532004--532227	111	2.0	111	81	6	265	16	25	18	39	1.92
533163--533515	165	2.1	165	84	6	464	28	11	6	53	1.62
533356--533725	197	1.9	197	85	5	514	28	11	7	52	1.64
533189--533910	364	2.0	363	91	2	1182	29	10	6	52	1.62
533571--533965	167	2.4	166	80	7	410	33	10	5	50	1.59
534100--534163	26	2.4	27	77	12	80	26	1	1	70	1.05
541283--541333	21	2.5	20	84	12	68	39	19	0	41	1.52
543911--543967	20	2.8	20	91	0	87	40	10	7	42	1.66
545572--545795	29	7.7	29	78	5	166	33	9	18	38	1.83
545587--545795	58	3.6	56	80	8	197	33	10	19	37	1.85
545571--545753	87	2.1	86	85	3	242	32	10	16	39	1.83
545571--545795	87	2.6	86	82	4	238	33	9	18	38	1.83
546015--546549	155	3.5	154	80	3	587	25	17	18	38	1.92
551302--551357	29	1.9	29	100	0	112	30	17	25	26	1.97
552301--552361	30	2.0	30	93	0	104	31	8	18	42	1.79
554252--554300	5	10.0	5	80	12	57	24	0	2	73	0.94
554473--554501	12	2.3	13	94	5	51	79	0	6	13	0.93
554628--554678	19	2.5	20	84	12	61	82	0	17	0	0.67
554631--554672	12	3.7	12	90	9	70	83	0	16	0	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557989--558102	55	2.1	55	94	0	201	24	24	8	42	1.83
566053--566615	158	3.6	157	75	8	464	36	14	15	32	1.89
568377--568413	19	1.9	19	94	0	65	43	29	16	10	1.82
568392--569631	158	7.9	157	72	11	515	38	11	18	31	1.86
568992--569512	160	3.3	158	77	8	461	39	10	19	30	1.86
568415--569571	314	3.7	317	74	9	717	39	10	18	31	1.85
568396--571081	159	17.1	158	72	10	1129	38	12	18	31	1.87
572816--572890	28	2.7	28	72	15	75	14	20	8	57	1.62
587437--587509	21	3.5	20	77	7	67	32	16	12	38	1.86
588597--588657	28	2.2	28	87	0	86	14	26	26	32	1.95
588914--588978	33	2.0	33	87	0	94	24	15	27	32	1.95
589019--589148	31	4.0	31	78	12	136	26	20	24	28	1.99
589487--589520	18	1.9	17	88	5	50	23	14	14	47	1.82
589915--589976	27	2.3	27	82	2	70	20	16	27	35	1.94
603844--603965	42	2.9	42	85	4	167	46	2	40	9	1.50
612961--613024	20	3.2	20	75	16	60	39	10	17	32	1.84
613842--614115	150	1.8	150	80	4	329	39	11	17	30	1.86
614003--614330	159	2.1	158	81	6	380	37	12	17	31	1.88
614327--616268	158	12.3	158	70	10	811	39	11	18	30	1.87
614793--615469	313	2.2	310	79	6	692	37	12	18	31	1.88
615703--616268	159	3.6	158	74	7	373	39	10	19	30	1.85
623230--623268	19	2.0	21	90	10	64	10	17	5	66	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629772--629848	28	2.8	27	81	11	77	58	7	23	10	1.57
629784--629849	28	2.4	28	85	12	84	56	7	24	12	1.61
640786--640861	12	6.9	11	75	15	52	39	2	48	9	1.49
640785--640870	24	3.8	24	72	17	85	41	2	45	10	1.51
640776--640894	42	2.8	42	92	0	193	42	2	46	8	1.47
646297--646406	42	2.6	42	92	0	184	41	2	46	9	1.50
655577--655661	30	2.7	31	72	18	79	47	1	44	7	1.38
661605--661723	42	2.8	42	92	0	193	8	46	2	42	1.47
661638--661713	12	6.9	11	75	15	52	9	48	2	39	1.49
661629--661714	24	3.8	24	72	17	85	10	45	2	41	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18