genome.fa.s167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  1  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5277--5301	10	2.5	10	100	0	50	48	12	0	40	1.40
8611--8644	17	2.0	17	88	0	50	64	5	5	23	1.38
10916--10949	2	17.0	2	87	0	50	44	0	2	52	1.16
10994--11153	80	2.0	80	97	0	302	37	4	19	38	1.72
13079--13121	21	2.0	21	95	0	77	62	2	0	34	1.08
13079--13132	21	2.6	21	88	5	65	64	1	0	33	1.04
15974--16281	154	2.0	155	81	3	361	16	31	10	41	1.82
18240--18271	2	16.0	2	100	0	64	50	0	0	50	1.00
20223--20264	2	21.0	2	100	0	84	50	0	0	50	1.00
22651--22724	21	3.5	20	73	17	60	64	5	1	28	1.23
25689--25985	154	1.9	155	82	2	373	16	30	9	42	1.80
27928--27969	2	21.0	2	95	0	75	47	0	2	50	1.14
29922--29953	2	16.0	2	100	0	64	50	0	0	50	1.00
32337--32410	21	3.5	20	73	17	60	64	5	1	28	1.23
35364--35671	154	2.0	155	81	1	368	17	30	10	41	1.83
37576--37601	2	13.0	2	100	0	52	50	0	0	50	1.00
39554--39591	2	19.0	2	100	0	76	50	0	0	50	1.00
41976--42049	21	3.5	20	73	17	60	64	5	1	28	1.23
45020--45319	154	1.9	155	82	2	379	16	31	10	42	1.81
45666--45690	2	12.5	2	100	0	50	52	0	0	48	1.00
49212--49247	2	18.0	2	100	0	72	50	0	0	50	1.00
51628--51701	21	3.5	20	73	17	60	64	5	1	28	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54666--54965	154	1.9	155	82	2	379	16	31	10	42	1.81
58769--58802	2	17.0	2	100	0	68	50	0	0	50	1.00
60022--60086	33	1.9	34	84	3	87	60	0	0	40	0.97
60368--60394	13	2.1	13	100	0	54	77	7	0	14	0.97
60371--60411	13	3.1	14	86	6	50	68	2	0	29	1.03
60384--60516	49	2.8	49	77	18	140	63	3	0	33	1.12
60907--60968	24	2.8	23	74	11	58	64	1	4	29	1.23
61059--61146	35	2.4	36	81	12	92	63	4	1	30	1.21
61092--61152	19	3.3	19	73	13	65	67	0	0	32	0.91
61104--61172	31	2.2	31	80	12	79	65	0	0	34	0.93
61092--61152	9	6.9	9	75	7	54	67	0	0	32	0.91
61099--61155	26	2.2	26	84	6	71	64	0	0	35	0.93
70063--70145	28	3.0	26	77	10	67	53	15	3	27	1.59
70091--70152	28	2.2	28	85	0	88	58	12	3	25	1.50
70196--70259	32	2.0	32	100	0	128	31	12	28	28	1.93
71293--71334	13	3.5	12	78	12	50	50	0	0	50	1.00
72855--72970	59	2.0	59	83	10	148	54	0	8	37	1.31
73316--73349	7	4.9	7	100	0	68	73	0	0	26	0.83
73499--73532	2	17.0	2	100	0	68	50	0	0	50	1.00
78731--78783	23	2.3	23	93	0	88	30	7	15	47	1.73
79214--79728	266	1.9	266	94	0	897	34	12	27	25	1.92
81104--81135	13	2.5	13	94	0	55	62	0	3	34	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86449--86504	26	2.2	25	83	6	67	55	1	0	42	1.10
93167--93222	20	2.6	22	83	13	64	42	0	1	55	1.10
93173--93250	32	2.3	35	79	16	94	39	1	1	57	1.15
93179--93233	23	2.4	23	76	11	60	41	0	1	56	1.10
93224--93265	14	2.9	15	83	13	52	30	2	0	66	1.04
93543--93578	11	3.2	11	88	4	54	66	0	0	33	0.92
93543--93581	14	2.8	14	92	0	60	66	0	0	33	0.92
94014--94048	18	1.9	18	94	0	61	0	14	0	85	0.59
94488--94517	14	2.1	15	93	6	53	66	3	0	30	1.07
99304--99329	6	4.3	6	100	0	52	53	15	15	15	1.73
100366--100399	12	2.8	12	86	4	50	55	0	0	44	0.99
101110--101144	11	3.0	12	83	8	54	31	0	0	68	0.90
108826--108864	18	2.1	19	85	9	53	61	12	15	10	1.56
115151--115214	22	3.0	22	78	17	55	35	3	0	60	1.12
115160--115201	11	4.2	10	80	19	52	30	0	0	69	0.89
115168--115217	20	2.4	20	80	12	57	38	0	0	62	0.96
116746--116781	16	2.1	16	90	10	54	22	0	5	72	1.05
118100--118168	32	2.1	33	81	7	79	59	7	4	28	1.44
119043--119109	12	5.8	12	73	15	52	64	0	1	34	1.03
119864--119888	7	3.6	7	100	0	50	88	0	0	12	0.53
119892--119916	9	2.8	9	100	0	50	52	0	0	48	1.00
120663--120700	2	19.5	2	89	5	60	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124912--124946	2	17.5	2	100	0	70	51	0	0	48	1.00
130729--130761	14	2.3	15	89	5	50	78	0	3	18	0.87
131179--131236	18	3.2	18	83	9	57	48	0	0	51	1.00
131033--131292	141	1.8	140	79	11	298	48	1	7	42	1.42
133615--133675	16	3.9	15	76	18	61	45	0	1	52	1.10
133622--133675	16	3.4	16	78	19	67	46	0	1	51	1.11
136289--136325	2	18.5	2	100	0	74	48	0	0	51	1.00
136350--136384	12	2.8	13	82	8	54	22	5	0	71	1.07
136467--136723	125	2.0	125	82	3	311	25	19	28	26	1.99
136880--136909	13	2.3	13	94	0	51	60	0	0	40	0.97
137972--138015	22	2.2	19	88	12	61	52	0	0	47	1.00
138203--138236	2	17.0	2	100	0	68	50	0	0	50	1.00
140885--140919	16	2.2	16	94	0	61	14	17	11	57	1.66
142486--142523	20	1.9	20	88	0	58	47	2	5	44	1.39
148135--148169	8	4.2	8	85	7	52	65	0	0	34	0.93
148138--148170	17	2.0	16	94	5	57	69	0	0	30	0.88
150304--150344	21	2.0	21	85	9	57	43	2	17	36	1.62
150606--150640	10	3.6	10	88	3	54	42	0	0	57	0.99
152492--152535	3	14.7	3	100	0	88	65	0	0	34	0.93
153015--153057	8	5.0	8	81	13	50	41	0	0	58	0.98
153023--153057	17	2.1	17	89	5	54	40	0	0	60	0.97
153124--153220	31	3.1	31	72	17	85	37	3	5	54	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153141--153220	15	5.2	15	73	11	72	37	2	5	55	1.35
153141--153188	16	3.1	15	85	8	60	35	4	2	58	1.29
155849--155873	3	8.3	3	100	0	50	64	0	0	36	0.94
157045--157088	22	2.0	23	90	4	72	54	0	0	45	0.99
157056--157106	19	2.7	19	88	8	70	52	0	0	47	1.00
157964--157998	17	2.0	18	88	5	54	68	17	0	14	1.21
158003--158047	23	2.0	23	82	8	56	71	6	0	22	1.09
158418--158472	3	18.3	3	100	0	110	67	0	0	32	0.91
161499--161557	29	2.0	29	83	0	73	38	1	5	54	1.33
163059--163108	20	2.5	20	75	15	57	44	2	0	54	1.11
163766--163798	5	6.4	5	96	3	57	54	0	0	45	0.99
163765--163802	15	2.4	16	86	13	60	55	0	0	44	0.99
164831--164862	3	10.7	3	100	0	64	65	0	0	34	0.93
165236--165281	23	2.0	23	95	0	83	43	4	28	23	1.73
165237--165287	23	2.2	23	89	3	75	45	3	25	25	1.71
165344--165386	18	2.3	19	84	11	54	48	0	2	48	1.14
165320--165379	12	4.9	13	71	22	58	46	0	0	53	1.00
165451--165483	16	2.1	16	94	0	57	42	0	0	57	0.98
165457--165498	22	1.9	22	90	0	66	40	0	2	57	1.12
166768--166983	34	6.4	34	86	1	283	25	7	26	40	1.83
166768--166985	67	3.2	67	86	1	310	24	7	27	40	1.82
171380--171597	34	6.5	34	87	1	287	25	7	26	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171380--171599	67	3.3	67	87	1	314	25	7	26	40	1.82
173427--173455	14	2.1	14	100	0	58	41	0	0	58	0.98
174110--174148	20	1.9	21	85	15	55	46	0	0	53	1.00
174419--174471	18	3.0	18	72	13	56	54	0	0	45	0.99
174423--174560	15	9.1	15	71	19	67	52	0	0	46	1.11
174412--174563	21	7.4	22	67	19	69	50	0	0	48	1.10
176180--176363	97	1.9	97	87	2	271	51	8	8	32	1.62
178564--178631	21	3.2	21	73	19	52	55	1	0	42	1.08
179338--179412	27	2.8	26	74	11	71	53	1	1	44	1.17
179509--179556	17	2.7	18	81	12	55	60	0	0	39	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22