genome.fa.s167.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  12  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1620817--1620871	17	3.2	16	87	10	74	58	1	3	36	1.26
1620891--1621004	33	3.5	33	74	20	105	41	0	0	57	1.11
1620895--1620952	24	2.5	24	78	13	66	41	0	1	56	1.09
1622367--1622424	17	3.4	17	75	2	53	65	0	1	32	1.03
1622387--1622455	29	2.5	26	76	15	75	60	0	1	37	1.06
1632158--1632190	17	1.9	17	93	0	57	27	0	0	72	0.85
1632153--1632192	17	2.4	16	84	8	53	27	2	0	70	1.01
1632768--1632827	29	2.1	28	84	9	77	46	0	0	53	1.00
1632768--1632827	28	2.1	29	84	9	79	46	0	0	53	1.00
1632777--1632829	14	3.9	14	73	11	56	50	0	0	49	1.00
1634288--1634322	18	1.9	18	88	11	54	62	0	0	37	0.95
1639659--1639687	2	14.5	2	100	0	58	51	0	48	0	1.00
1642391--1642454	28	2.3	29	89	7	98	60	1	0	37	1.06
1643545--1643588	22	2.0	22	95	0	79	43	22	9	25	1.82
1643921--1643946	2	13.0	2	100	0	52	50	0	0	50	1.00
1645919--1645951	14	2.3	15	89	5	50	42	0	3	54	1.15
1646025--1646065	2	20.5	2	100	0	82	48	0	0	51	1.00
1647282--1647321	17	2.3	18	91	4	64	45	0	2	52	1.14
1647966--1648006	21	2.0	21	90	9	66	41	0	0	58	0.98
1649981--1650013	13	2.5	14	85	14	52	33	0	0	66	0.92
1653948--1653996	14	3.4	14	76	15	55	32	2	2	63	1.17
1654522--1654559	3	12.7	3	100	0	76	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1657686--1657716	3	10.3	3	100	0	62	32	0	0	67	0.91
1658442--1658475	9	3.8	9	85	14	52	52	0	0	47	1.00
1658473--1658542	24	2.8	24	78	8	68	27	4	1	67	1.18
1658643--1658722	37	2.1	38	83	2	99	23	2	6	67	1.26
1658561--1659158	321	1.9	322	79	8	682	33	6	7	52	1.55
1659271--1659341	11	6.2	11	70	20	56	28	2	2	66	1.20
1659413--1659446	17	2.1	16	88	5	50	61	0	0	38	0.96
1659449--1659499	22	2.4	21	81	15	61	47	0	0	52	1.00
1659453--1659512	26	2.3	27	83	11	81	50	0	0	50	1.00
1660385--1660433	21	2.3	22	82	10	66	44	0	0	55	0.99
1661005--1661069	23	2.8	23	73	17	80	43	1	9	46	1.45
1662355--1662405	27	1.9	26	88	4	75	47	3	1	47	1.32
1663270--1663299	15	1.9	15	93	6	51	60	0	0	40	0.97
1663471--1663506	12	2.9	12	88	8	54	69	2	0	27	1.02
1663475--1663542	25	2.8	24	81	4	73	63	2	0	33	1.10
1665515--1665600	28	3.0	27	78	18	79	54	0	1	44	1.07
1665523--1665610	36	2.7	34	68	21	82	50	0	1	48	1.08
1666266--1666311	22	2.0	24	83	8	60	45	2	0	52	1.13
1667033--1667137	48	2.2	48	87	3	149	35	9	12	42	1.75
1667175--1667210	15	2.4	15	80	0	54	30	0	0	69	0.89
1667837--1667894	22	2.8	20	73	19	55	31	0	5	63	1.16
1667855--1667902	16	3.0	16	76	11	53	37	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1667817--1667894	42	1.9	39	82	7	93	30	0	3	65	1.10
1669104--1669150	23	2.1	21	81	14	51	48	0	0	51	1.00
1669552--1669582	12	2.5	13	89	10	55	58	0	0	41	0.98
1678173--1678261	30	3.2	26	75	16	81	48	0	5	46	1.26
1678166--1678258	29	3.2	28	75	15	100	48	0	6	45	1.28
1679593--1679644	24	2.2	24	96	3	97	46	7	26	19	1.77
1682374--1682430	29	2.0	29	86	6	80	54	1	7	36	1.38
1683341--1683401	5	12.4	5	79	10	56	42	0	0	57	0.98
1683341--1683415	22	3.4	21	75	18	73	41	0	2	56	1.13
1683672--1683713	13	3.2	13	77	12	50	35	0	0	64	0.94
1884289--1884330	21	2.0	21	85	0	57	54	0	9	35	1.33
1884602--1884686	38	2.2	38	81	4	100	49	10	0	40	1.37
1885201--1885266	23	2.9	22	77	18	64	46	4	0	48	1.22
1888220--1888329	56	2.0	57	87	3	161	50	5	13	30	1.64
1892269--1892316	18	2.6	18	86	6	60	29	6	0	64	1.18
1898490--1898526	3	12.3	3	100	0	74	32	0	0	67	0.91
1905120--1905160	16	2.4	17	80	19	50	48	4	0	46	1.23
1905340--1905521	90	2.0	90	96	0	337	45	4	8	41	1.56
1906504--1906574	23	3.1	22	77	18	74	47	4	1	46	1.30
1906536--1906593	26	2.2	27	81	9	66	46	3	3	46	1.36
1907197--1907241	3	15.0	3	100	0	90	0	33	0	66	0.92
1907934--1907988	28	2.0	28	100	0	110	18	10	21	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907970--1908038	24	2.8	24	77	4	66	23	5	26	44	1.75
1910562--1910607	21	2.1	22	84	4	58	30	19	30	19	1.97
1912512--1912566	28	2.0	28	100	0	110	18	10	21	49	1.78
1912548--1912616	24	2.8	24	77	4	66	23	5	26	44	1.75
1917499--1917558	3	20.0	3	100	0	120	33	0	0	66	0.92
1923447--1923519	30	2.3	32	75	20	80	60	2	6	30	1.37
1923447--1923505	30	2.0	29	90	3	91	57	1	8	32	1.39
1925628--1925754	13	9.8	13	64	17	59	51	1	2	44	1.23
1925607--1925649	20	2.1	21	86	4	61	41	2	2	53	1.26
1925631--1925708	26	3.2	25	69	22	67	48	2	2	46	1.29
1925668--1925733	27	2.4	27	82	5	71	54	3	1	40	1.25
1926208--1926244	2	18.5	2	100	0	74	48	0	0	51	1.00
1930941--1930981	21	2.0	21	90	0	64	29	9	7	53	1.60
1933829--1933870	19	2.2	20	95	4	77	47	4	16	30	1.67
1934524--1934563	2	20.0	2	100	0	80	50	0	0	50	1.00
1935437--1935493	12	5.1	12	74	22	61	49	7	1	42	1.40
1935459--1935577	11	11.3	11	67	20	60	54	7	0	37	1.29
1935991--1936044	23	2.5	22	79	8	65	44	0	0	55	0.99
1936424--1936465	2	21.0	2	90	0	66	47	2	2	47	1.28
1942232--1942278	16	2.9	16	75	12	51	38	31	21	8	1.83
1942762--1942791	16	1.9	15	93	6	51	53	3	16	26	1.59
1943719--1943780	16	3.9	16	79	8	63	58	16	1	24	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1943716--1943780	32	2.0	32	84	0	85	58	15	1	24	1.46
1947429--1947470	19	2.2	20	95	4	77	47	4	16	30	1.67
1949448--1949476	12	2.5	12	94	5	51	68	0	0	31	0.89
1949483--1949528	21	2.2	21	84	0	56	52	10	6	30	1.62
1950458--1950505	2	24.0	2	91	0	78	47	2	2	47	1.25
1952626--1952665	21	1.9	21	89	0	62	32	10	2	55	1.47
1953772--1953884	59	1.9	59	88	0	172	38	7	14	38	1.75
1954045--1954111	33	2.0	33	82	5	82	23	14	7	53	1.66
1960287--1960328	19	2.2	20	86	4	59	50	2	16	30	1.58
1962332--1962462	11	12.4	11	68	21	50	54	9	0	35	1.39
1962445--1962476	16	2.0	16	100	0	64	62	6	0	31	1.20
1962892--1962941	23	2.2	22	82	13	57	44	0	0	56	0.99
1963324--1963359	2	18.0	2	88	0	54	47	2	2	47	1.31
1966769--1966907	37	3.5	40	75	14	119	28	22	18	30	1.97
1970798--1970841	22	2.0	22	82	8	54	84	9	6	0	0.79
1971850--1972673	55	15.0	55	90	3	1252	27	29	20	21	1.98
1972208--1972297	26	3.3	26	65	14	65	28	31	17	22	1.97
1973483--1973550	19	3.9	19	78	21	85	33	11	14	39	1.83
1973484--1973548	32	2.0	32	96	0	121	32	12	15	40	1.84
1973503--1973529	13	2.1	13	100	0	54	29	14	14	40	1.86
1973590--1973615	13	2.0	13	100	0	52	30	15	15	38	1.88
1973570--1973636	33	2.0	33	88	0	98	25	14	16	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1976073--1976148	27	2.8	28	89	2	109	23	34	21	21	1.97
1975968--1976303	51	6.4	51	72	13	225	30	25	12	31	1.93
1976286--1976362	28	2.7	29	84	4	95	24	33	16	24	1.96
1975968--1976413	214	2.1	210	89	2	660	28	26	13	31	1.94
1976023--1976436	107	3.9	107	73	9	358	28	27	13	30	1.94
1978210--1978251	19	2.2	20	91	4	68	47	2	19	30	1.62
1980242--1980281	20	2.0	21	90	5	64	57	2	0	40	1.12
1980243--1980322	21	3.9	20	76	9	56	56	7	1	35	1.36
1980243--1980433	11	18.3	11	65	26	69	54	8	1	35	1.39
1986516--1986546	16	1.9	16	93	0	53	58	3	9	29	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22