genome.fa.s167.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  10  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1241778--1241809	17	1.9	17	93	6	57	25	9	3	62	1.40
1241780--1241817	16	2.4	16	83	12	51	26	7	2	63	1.35
1241805--1241863	24	2.4	25	76	23	72	33	5	0	61	1.18
1242247--1242322	29	2.6	28	82	10	91	40	3	1	53	1.27
1242301--1242354	19	2.8	20	83	8	67	44	0	0	55	0.99
1242935--1242990	6	9.2	6	74	18	53	53	0	0	46	1.00
1242935--1242984	18	2.7	18	96	3	91	54	0	0	46	1.00
1246208--1246269	30	2.1	30	87	6	90	41	3	0	54	1.16
1246208--1246255	14	3.3	14	80	14	53	39	4	0	56	1.19
1246757--1246797	22	1.9	21	90	5	64	39	0	0	60	0.96
1246778--1246911	27	4.8	27	72	21	91	50	1	0	48	1.10
1246736--1246825	27	3.7	23	68	23	69	44	0	0	55	0.99
1246769--1246835	35	1.9	35	85	11	93	49	0	0	50	1.00
1246816--1246854	15	2.9	14	85	14	55	51	0	0	48	1.00
1249425--1249461	2	18.5	2	100	0	74	51	0	0	48	1.00
1250256--1250280	2	12.5	2	100	0	50	52	0	0	48	1.00
1253487--1253529	18	2.6	16	77	22	52	41	2	0	55	1.12
1253494--1253640	18	7.9	18	67	19	72	41	1	0	56	1.13
1254577--1254613	17	2.1	18	90	5	58	45	0	0	54	1.00
1256094--1256132	15	2.5	15	87	8	51	46	0	0	53	1.00
1256106--1256137	15	2.2	15	94	5	57	40	0	0	59	0.97
1256127--1256179	21	2.5	20	79	8	61	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1256129--1256190	10	5.9	11	71	14	51	56	0	0	43	0.99
1257621--1257650	2	15.0	2	100	0	60	50	0	0	50	1.00
1261002--1261029	2	14.0	2	100	0	56	50	0	0	50	1.00
1269981--1270019	13	2.8	13	84	7	51	41	2	0	56	1.13
1270508--1270534	3	9.0	3	100	0	54	33	33	33	0	1.58
1273071--1273378	76	4.0	76	84	4	334	30	17	20	32	1.95
1278431--1278459	4	7.2	4	100	0	58	75	0	0	24	0.80
1279135--1279183	17	2.8	17	84	6	53	46	0	2	51	1.12
1280565--1280603	18	2.1	18	85	9	51	61	0	0	38	0.96
1281124--1281159	6	6.0	6	90	0	54	0	44	2	52	1.15
1290406--1290495	35	2.5	35	77	8	85	48	0	0	51	1.00
1290426--1290473	23	2.0	23	84	4	60	45	0	0	54	0.99
1290384--1290456	32	2.3	33	79	11	89	47	0	0	52	1.00
1295876--1295904	2	14.5	2	100	0	58	0	51	0	48	1.00
1299928--1299958	16	2.0	15	93	6	53	51	0	0	48	1.00
1300718--1300753	2	18.0	2	100	0	72	50	0	0	50	1.00
1303385--1303447	15	4.3	14	75	16	56	71	0	1	26	0.95
1303893--1303917	13	1.9	13	100	0	50	40	0	0	60	0.97
1305006--1305044	20	1.9	21	84	5	53	46	2	5	46	1.38
1307005--1307033	15	2.0	15	93	6	51	55	6	0	37	1.27
1310379--1310412	16	2.1	17	94	5	61	58	0	17	23	1.38
1312354--1312397	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315701--1315831	64	2.1	64	86	1	183	30	10	6	52	1.60
1322755--1322923	86	2.0	84	87	4	243	33	9	23	34	1.87
1324614--1324667	22	2.4	22	81	9	56	38	0	0	61	0.96
1325447--1325478	2	16.0	2	100	0	64	50	0	0	50	1.00
1325697--1325802	41	2.6	41	75	10	108	36	11	8	43	1.71
1325808--1325846	10	3.8	10	82	3	51	51	0	5	43	1.24
1326017--1326137	61	2.0	61	90	4	190	38	12	11	38	1.79
1326838--1326907	27	2.5	28	82	13	83	25	7	22	44	1.78
1329482--1329527	21	2.1	22	84	4	58	30	17	30	21	1.96
1334633--1334666	17	1.9	18	88	5	52	52	2	8	35	1.47
1335789--1335830	21	2.0	21	100	0	84	33	28	14	23	1.94
1340950--1341001	2	26.0	2	100	0	104	50	0	0	50	1.00
1343699--1343868	85	2.0	84	88	3	252	31	10	23	35	1.88
1344329--1344377	14	3.2	15	78	21	57	44	2	0	53	1.12
1346301--1346348	2	24.0	2	100	0	96	50	0	0	50	1.00
1346348--1346377	2	15.0	2	100	0	60	0	0	50	50	1.00
1346595--1346718	64	2.0	61	87	4	176	40	14	11	33	1.82
1347703--1347734	14	2.1	16	88	11	50	43	21	3	31	1.68
1351471--1351501	5	6.2	5	96	0	53	41	0	22	35	1.54
1356384--1356417	14	2.5	13	86	9	50	52	0	0	47	1.00
1357033--1357082	21	2.4	21	72	24	52	54	2	0	44	1.11
1358628--1358679	28	1.9	26	88	7	77	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358660--1358697	20	2.0	20	94	5	69	52	0	0	47	1.00
1358631--1358687	27	2.2	26	79	14	64	57	0	0	42	0.98
1362918--1362961	24	1.9	23	81	9	54	38	2	0	59	1.10
1363027--1363074	15	3.4	13	81	16	51	64	0	0	35	0.94
1363027--1363069	15	2.9	15	86	6	52	60	0	0	39	0.97
1365824--1365888	6	10.7	6	76	12	53	50	3	0	46	1.17
1365824--1365891	18	3.7	18	75	16	68	51	2	0	45	1.16
1365940--1365978	20	1.9	20	84	5	51	48	0	0	51	1.00
1366730--1366759	2	15.5	2	93	6	53	50	0	0	50	1.00
1369020--1369076	13	4.5	13	76	10	55	35	8	15	40	1.79
1369128--1369168	21	2.0	21	81	18	50	24	4	17	53	1.63
1369175--1369206	16	2.0	17	88	11	50	21	6	25	46	1.74
1369345--1369397	13	4.1	13	80	0	61	45	7	0	47	1.31
1369342--1369392	26	2.0	26	88	0	75	45	5	0	49	1.26
1377015--1377059	2	22.5	2	81	0	54	44	2	2	51	1.26
1378840--1378866	13	2.1	13	100	0	54	22	33	0	44	1.53
1384694--1384753	11	6.1	11	83	13	53	40	1	0	58	1.08
1384719--1384765	8	5.9	8	78	9	51	25	2	2	70	1.10
1384877--1384940	21	3.1	21	84	10	71	23	3	4	68	1.23
1384900--1384934	10	3.4	10	84	7	52	22	0	2	74	0.95
1385187--1385225	18	2.2	18	86	9	53	38	2	2	56	1.27
1385570--1385627	11	5.2	12	76	12	61	31	3	0	65	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1385915--1385990	4	19.8	4	71	26	58	75	0	22	2	0.93
1385909--1385986	23	3.5	23	77	12	90	75	0	21	2	0.92
1385915--1385986	14	5.1	14	84	14	94	75	0	22	2	0.94
1386062--1386094	5	6.6	5	86	13	50	21	0	0	78	0.75
1386371--1386410	15	2.5	16	88	8	55	57	0	0	42	0.98
1386600--1386640	21	2.0	21	90	4	66	41	0	2	56	1.13
1385950--1387046	588	1.9	585	87	4	1627	37	5	7	48	1.55
1386959--1386998	15	2.5	16	88	8	55	57	0	0	42	0.98
1386959--1387001	16	2.6	17	85	10	63	55	0	0	44	0.99
1387424--1387466	6	7.0	6	85	15	61	32	2	0	65	1.06
1387424--1387460	13	2.8	13	95	0	65	32	2	0	64	1.07
1387829--1387886	29	2.0	29	96	3	109	75	3	6	13	1.13
1387934--1389442	79	20.0	77	81	8	1528	50	8	9	30	1.65
1387866--1389475	675	2.4	669	84	5	2060	50	9	9	30	1.65
1389683--1389733	24	2.2	23	82	6	59	56	0	0	43	0.99
1390316--1390354	3	13.0	3	100	0	78	66	0	0	33	0.92
1390762--1390801	20	2.0	20	85	0	53	62	0	0	37	0.95
1391410--1391444	18	1.9	18	88	11	54	54	14	0	31	1.40
1392166--1392202	18	2.0	19	89	5	58	48	5	0	45	1.25
1392190--1392232	21	2.0	21	86	0	59	34	11	2	51	1.51
1392272--1392322	28	2.0	27	85	14	72	54	3	0	41	1.19
1392429--1392468	18	2.2	19	86	13	57	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1392567--1392726	50	3.2	50	89	7	245	30	20	18	30	1.96
1395651--1395785	50	2.7	50	92	0	225	28	22	17	31	1.96
1395650--1395809	50	3.2	50	88	1	223	31	20	16	31	1.95
1402681--1402765	38	2.3	38	80	12	95	45	0	0	54	1.00
1405645--1405678	17	2.0	17	88	0	50	41	8	26	23	1.83
1409546--1409654	52	2.1	52	100	0	218	38	22	17	22	1.93
1415092--1415132	22	1.9	21	85	14	57	60	0	0	39	0.96
1415945--1416000	29	1.9	29	92	0	94	19	17	33	28	1.95
1416167--1416217	21	2.5	21	78	6	61	43	0	1	54	1.11
1416158--1416226	21	3.1	21	71	23	52	40	0	1	57	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22