genome.fa.s167.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  4  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477490--477523	18	1.9	17	88	5	50	32	2	0	64	1.08
477459--477512	25	2.2	25	83	6	65	35	1	0	62	1.06
477455--477533	38	2.1	39	83	11	101	36	1	0	62	1.04
477974--478110	23	6.0	23	65	19	65	40	1	2	55	1.21
478072--478121	25	2.0	24	88	3	73	34	0	0	66	0.92
478071--478116	19	2.6	17	86	6	56	36	0	0	63	0.95
478072--478110	13	3.1	13	82	17	55	38	0	0	61	0.96
478131--478163	9	3.8	9	84	8	50	54	0	0	45	0.99
478132--478165	17	2.0	17	100	0	68	52	0	0	47	1.00
478199--478236	14	2.4	17	87	12	55	55	0	0	44	0.99
478611--478641	10	3.1	10	95	0	53	58	0	0	41	0.98
478881--478912	2	16.0	2	93	0	55	46	0	3	50	1.17
478912--478958	2	23.5	2	95	0	85	51	2	46	0	1.13
480919--480947	3	9.7	3	100	0	58	31	0	0	68	0.89
487470--487500	2	15.5	2	100	0	62	0	48	0	51	1.00
488067--488097	16	1.9	16	100	0	62	25	12	16	45	1.83
489378--489411	2	17.0	2	100	0	68	50	0	0	50	1.00
494704--494754	26	2.0	26	92	0	84	43	9	17	29	1.81
500968--501011	3	14.7	3	100	0	88	34	0	0	65	0.93
506784--506855	15	4.7	15	75	10	56	47	1	1	50	1.18
508918--508981	31	2.1	31	85	5	85	53	12	3	31	1.54
509298--509332	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509400--509484	9	10.0	9	66	24	51	50	0	0	49	1.00
509389--509458	36	2.0	36	86	8	101	58	0	0	41	0.98
509795--509850	19	2.8	20	84	10	71	58	0	0	41	0.98
510089--510125	17	2.2	17	90	4	58	75	0	0	24	0.80
510782--510821	21	1.9	21	90	10	64	42	0	0	57	0.98
512097--512151	16	3.4	16	71	28	53	41	1	1	54	1.21
512203--512238	18	1.9	19	88	5	56	30	0	0	69	0.89
512200--512238	19	2.1	19	90	9	62	33	0	0	66	0.92
512470--512503	16	2.1	16	94	0	59	44	26	5	23	1.76
512517--512548	2	16.0	2	100	0	64	50	0	0	50	1.00
512541--512618	34	2.4	32	82	8	86	38	0	1	60	1.05
512531--512615	44	1.9	44	86	9	120	40	0	1	58	1.05
512577--512658	17	4.6	18	73	17	64	42	0	0	57	0.98
512594--512648	25	2.2	25	83	6	67	43	0	0	56	0.99
512592--512659	36	2.0	33	82	8	82	44	0	0	55	0.99
512616--512665	19	2.8	18	76	11	50	48	0	0	52	1.00
514010--514038	14	2.1	14	100	0	58	51	0	0	48	1.00
514064--514118	9	6.0	9	72	19	51	43	1	0	54	1.10
514064--514118	19	3.0	18	75	19	51	43	1	0	54	1.10
514070--514123	19	2.9	18	78	10	56	46	1	0	51	1.11
514347--514379	3	11.0	3	100	0	66	66	0	0	33	0.92
516541--516582	15	2.8	15	88	0	57	26	21	9	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517401--517435	15	2.3	15	90	0	52	28	14	37	20	1.91
519568--519601	3	11.3	3	93	0	59	29	0	2	67	1.05
524400--524463	26	2.3	28	84	12	80	64	1	0	34	1.03
524397--524470	26	2.6	29	79	16	75	64	1	0	33	1.02
524490--524613	39	3.1	41	62	14	96	28	8	6	57	1.52
526306--526344	4	10.0	4	83	5	53	71	0	0	28	0.86
527016--527066	23	2.2	23	79	6	59	35	1	0	62	1.06
527011--527075	26	2.5	24	80	11	67	35	1	0	63	1.04
527038--527106	27	2.5	27	80	13	70	36	2	0	60	1.11
528875--528919	24	1.9	23	86	4	63	66	0	2	31	1.04
529171--529200	15	2.0	15	100	0	60	26	0	6	66	1.16
531220--531258	18	2.2	18	86	9	53	64	7	0	28	1.21
531586--531654	34	2.0	34	91	0	111	33	14	13	39	1.85
532248--532310	20	3.0	21	77	13	67	50	1	0	47	1.10
540931--541002	5	13.8	5	76	13	65	47	0	0	52	1.00
540953--541019	28	2.4	28	82	7	82	52	0	0	47	1.00
540938--541046	42	2.5	42	81	11	123	49	0	0	50	1.00
540922--541038	48	2.4	48	75	10	116	49	0	0	50	1.00
541365--541458	33	2.8	33	79	17	106	36	3	2	58	1.26
541604--541666	25	2.7	23	76	9	72	42	1	0	55	1.09
541676--541721	21	2.1	23	88	8	69	56	0	2	41	1.11
541683--541738	28	2.0	29	89	3	87	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541869--541927	21	2.9	21	74	20	61	57	0	0	42	0.98
542067--542115	15	3.3	15	77	5	64	12	26	0	61	1.31
546493--546529	2	18.5	2	100	0	74	48	0	0	51	1.00
547819--547885	34	2.0	33	85	2	89	23	31	34	10	1.89
551286--551524	59	4.0	58	85	2	280	16	20	30	31	1.95
551286--551521	119	2.0	120	85	5	325	16	21	30	31	1.95
561783--561843	28	2.2	28	96	0	113	11	11	37	39	1.78
562282--562324	23	2.0	22	86	9	61	55	0	2	41	1.12
562334--562376	23	1.9	23	85	4	61	39	20	9	30	1.84
562646--562723	41	1.9	41	94	0	138	26	10	11	51	1.70
563661--563709	25	2.0	25	88	8	73	44	0	0	55	0.99
563786--563846	21	2.8	21	72	22	54	59	0	0	40	0.98
563966--564006	22	1.9	21	85	5	55	63	2	12	21	1.40
564552--564577	3	8.7	3	100	0	52	34	0	34	30	1.58
564549--564604	9	6.2	9	82	0	58	44	0	35	19	1.51
575762--575830	23	3.0	22	67	10	57	42	1	11	44	1.49
586960--586995	12	3.1	12	92	4	56	44	0	0	55	0.99
586980--587069	32	2.9	32	80	11	91	48	0	0	51	1.00
587353--587398	21	2.2	21	84	7	58	71	0	0	28	0.86
594237--594307	37	1.9	37	94	0	124	32	26	7	33	1.83
597391--597417	2	13.5	2	100	0	54	48	0	51	0	1.00
597992--598052	18	3.3	18	79	6	61	67	1	0	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598693--598743	15	3.3	15	75	20	52	70	0	1	27	0.98
598680--598754	31	2.5	31	75	14	84	65	0	1	33	1.01
602696--602748	23	2.3	24	83	6	65	49	1	5	43	1.37
602696--602759	22	2.7	24	78	9	69	53	1	6	39	1.36
602708--602758	24	2.2	22	86	6	66	52	1	7	37	1.42
602785--602833	20	2.5	19	77	9	53	34	0	2	63	1.06
602793--602834	21	2.2	19	84	16	52	33	0	2	64	1.07
604905--604962	19	3.1	19	77	5	55	29	0	6	63	1.20
605244--605271	14	2.0	14	100	0	56	35	0	0	64	0.94
606097--606134	20	1.9	20	88	0	58	44	0	7	47	1.32
606645--606685	22	1.9	21	85	5	55	58	0	0	41	0.98
607890--607922	16	2.1	16	88	5	50	45	0	9	45	1.35
608913--608956	18	2.3	18	84	11	52	6	18	22	52	1.69
609080--610200	375	3.0	370	88	3	1575	28	7	35	28	1.84
611328--611622	156	1.9	156	81	4	362	33	16	24	25	1.96
614252--614298	2	23.0	2	91	4	76	48	2	2	46	1.25
616150--616177	2	14.0	2	100	0	56	50	0	50	0	1.00
624779--624862	44	1.9	44	85	4	116	45	9	1	44	1.44
631835--631877	6	7.2	6	94	0	77	46	0	2	51	1.13
634586--634629	20	2.4	18	88	11	63	72	0	2	25	0.96
635083--635123	22	1.9	22	95	5	75	34	2	0	63	1.08
635081--635130	22	2.3	21	82	3	73	38	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635106--635132	14	1.9	14	100	0	54	33	0	0	66	0.92
637587--637628	17	2.5	17	80	7	50	35	16	26	21	1.94
640628--640654	12	2.2	12	100	0	54	55	14	0	29	1.40
640749--640821	26	2.7	26	85	4	83	50	6	30	12	1.66
640807--640921	51	2.3	51	98	1	223	43	13	26	15	1.85
641510--641548	18	2.3	18	91	8	64	35	28	25	10	1.89
642455--642962	79	6.4	79	91	0	827	27	24	14	33	1.95
642455--642962	237	2.1	237	95	0	917	27	24	14	33	1.95
644736--644784	2	23.0	2	84	12	62	46	8	0	44	1.33
648035--648075	11	3.5	11	81	12	55	2	19	0	78	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22