genome.fa.s167.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  2  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179703--179745	5	8.6	5	80	10	52	60	16	2	20	1.46
183845--183885	22	1.9	21	85	14	57	41	0	0	58	0.98
185627--185687	26	2.2	28	80	5	72	42	8	3	45	1.50
185956--185983	2	14.0	2	100	0	56	50	0	0	50	1.00
187636--187675	21	1.9	21	84	0	53	40	2	5	52	1.37
187769--187819	25	2.0	27	88	7	79	54	0	0	45	0.99
188265--188290	4	6.5	4	100	0	52	23	0	0	76	0.78
188286--188317	3	10.7	3	100	0	64	31	0	0	68	0.90
190746--190783	2	19.0	2	100	0	76	50	0	0	50	1.00
191656--191780	9	14.0	9	69	20	75	40	2	0	56	1.18
191659--191782	11	12.2	10	72	17	71	39	2	0	57	1.18
191659--191768	19	5.5	19	72	15	80	40	2	0	55	1.20
191747--191793	22	2.2	20	88	7	67	29	2	0	68	1.02
192259--192293	10	3.9	9	85	14	54	34	0	0	65	0.93
196525--196551	14	1.9	14	100	0	54	0	92	0	7	0.38
198021--198076	25	2.3	23	84	6	67	55	0	0	44	0.99
198254--198295	2	21.0	2	90	0	66	45	0	4	50	1.23
198632--198727	30	3.2	30	75	4	95	37	11	5	45	1.63
199630--199657	3	9.3	3	100	0	56	64	0	35	0	0.94
200324--200367	16	2.8	16	96	0	79	27	11	13	47	1.77
200401--200431	16	1.9	16	93	0	53	32	0	9	58	1.31
201113--201155	20	2.2	19	88	12	61	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201150--201191	18	2.2	20	87	8	61	52	4	0	42	1.22
202215--202277	18	3.6	18	79	10	60	65	0	1	33	1.03
202438--202493	21	2.7	21	82	0	58	35	7	1	55	1.38
203214--203247	2	17.0	2	100	0	68	50	0	0	50	1.00
211924--211959	13	2.8	13	91	0	54	16	0	11	72	1.12
212112--212164	21	2.5	22	73	11	58	43	0	0	56	0.99
213218--213250	2	16.5	2	93	0	57	45	0	0	54	0.99
214003--214044	15	2.6	17	82	17	54	57	0	7	35	1.26
219886--219926	18	2.2	20	83	16	52	43	0	4	51	1.23
219961--219999	18	2.1	18	85	4	51	23	0	7	69	1.14
226013--226056	2	22.0	2	90	0	70	45	4	0	50	1.22
228730--228766	19	1.9	19	88	0	56	27	16	24	32	1.96
229628--229675	19	2.5	19	77	12	53	37	2	6	54	1.38
229688--229758	37	1.9	37	83	11	92	50	0	0	49	1.00
230113--230147	3	11.7	3	100	0	70	68	0	0	31	0.90
230353--230386	17	2.0	17	100	0	68	41	0	29	29	1.57
230675--230708	2	17.0	2	100	0	68	50	0	0	50	1.00
232411--232441	7	4.4	7	91	0	53	83	0	3	12	0.75
232565--232683	52	2.3	52	100	0	238	42	3	15	39	1.63
232565--232647	25	3.2	26	60	13	62	42	3	15	38	1.65
232591--232673	25	3.2	26	60	13	62	36	3	13	46	1.60
233250--233307	23	2.4	24	81	18	68	62	8	0	29	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233745--233782	2	19.0	2	100	0	76	50	0	0	50	1.00
233853--233932	40	2.0	40	90	0	124	35	20	7	37	1.81
238000--238037	2	19.0	2	100	0	76	50	0	0	50	1.00
239245--239295	12	3.9	12	78	16	57	43	5	11	39	1.66
239251--239307	27	2.1	27	90	0	87	40	5	19	35	1.74
239358--239383	9	2.9	9	100	0	52	46	19	34	0	1.50
244005--244055	12	3.9	12	78	16	57	43	5	11	39	1.66
244011--244067	27	2.1	27	90	0	87	40	5	19	35	1.74
244118--244150	9	3.7	9	95	0	57	45	18	33	3	1.65
245111--245153	2	21.5	2	90	9	70	48	0	2	48	1.14
246862--246911	2	25.0	2	95	0	91	48	0	2	50	1.12
248610--248644	11	3.0	11	91	8	52	22	77	0	0	0.78
249645--249687	2	21.5	2	95	0	77	51	2	46	0	1.13
250434--250473	2	20.0	2	94	0	71	47	0	2	50	1.14
250726--250902	89	2.0	88	97	1	336	44	12	11	32	1.78
256345--256374	2	15.0	2	92	0	51	53	0	0	46	1.00
259850--259879	4	7.8	4	92	7	53	23	0	0	76	0.78
260042--260091	18	2.9	18	85	11	61	52	0	0	48	1.00
261736--261783	19	2.4	19	80	16	53	29	4	10	56	1.52
261821--261856	19	1.9	19	88	5	56	52	2	2	41	1.30
262388--262435	20	2.4	19	79	6	51	54	2	0	43	1.12
262686--262719	17	2.0	17	100	0	68	41	23	5	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262931--262994	30	2.2	30	81	13	82	57	3	1	37	1.24
263808--263886	29	2.8	28	76	19	83	50	0	2	46	1.14
264033--264089	28	2.0	28	83	6	71	45	0	1	52	1.11
264076--264130	24	2.2	25	87	6	76	45	0	0	54	0.99
264237--264267	16	1.9	16	93	0	53	29	0	0	70	0.87
271648--271699	24	2.2	24	100	0	104	32	23	17	26	1.96
278247--278278	9	3.4	9	95	4	55	9	0	0	90	0.45
278247--278278	10	3.3	10	91	8	57	9	0	0	90	0.45
279608--279668	22	2.9	22	85	9	74	34	0	0	65	0.93
279668--279706	18	2.2	18	90	0	60	56	0	0	43	0.99
283691--283762	19	4.2	19	73	22	79	61	0	0	38	0.96
283652--283762	58	1.9	58	82	14	140	58	1	0	39	1.09
285578--285617	16	2.4	18	80	19	52	55	0	0	45	0.99
286268--286349	39	2.1	39	84	10	107	59	0	0	40	0.97
286299--286355	15	3.8	16	74	21	52	61	0	0	38	0.96
286282--286356	26	2.6	28	76	15	75	60	0	0	40	0.97
286447--286494	21	2.4	20	82	6	62	64	0	2	33	1.05
286462--286507	15	3.1	15	81	9	58	65	0	0	34	0.93
286392--286505	20	5.3	20	69	16	61	60	0	0	37	1.09
286447--286505	10	5.8	10	75	11	57	64	0	1	33	1.04
286447--286556	25	4.3	25	74	16	91	62	0	0	36	1.01
286504--286541	12	3.1	12	85	14	51	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286524--286565	12	3.4	12	90	3	57	69	0	0	30	0.89
286477--286571	25	3.8	25	76	13	72	63	0	1	35	1.02
286793--286835	11	3.6	11	77	17	50	62	0	0	37	0.95
286772--286836	25	2.7	25	85	4	89	61	0	0	38	0.96
287570--287595	2	13.0	2	100	0	52	50	0	0	50	1.00
288108--288137	15	2.0	15	93	0	51	56	0	0	43	0.99
288809--288863	20	2.8	20	83	10	69	63	0	0	36	0.95
289565--289614	23	2.1	24	85	3	66	64	0	2	34	1.05
289956--290001	21	2.2	21	100	0	92	34	0	8	56	1.30
290749--290790	18	2.3	19	87	4	59	59	0	0	40	0.97
290855--290891	19	1.9	19	88	0	56	62	0	5	32	1.18
292145--292180	2	18.0	2	100	0	72	50	0	0	50	1.00
292477--292515	15	2.6	15	88	8	53	20	5	7	66	1.36
293432--293557	51	2.5	51	82	1	144	29	6	6	57	1.48
293445--293575	51	2.5	51	81	1	145	27	6	6	59	1.47
294172--294240	36	1.9	36	82	8	88	42	0	1	56	1.08
299713--299742	15	2.1	15	93	6	53	56	0	0	43	0.99
307402--307431	3	10.0	3	100	0	60	66	0	0	33	0.92
308146--308209	24	2.6	25	80	4	69	40	1	1	56	1.18
308162--308217	25	2.2	25	81	6	69	42	1	0	55	1.10
309501--309529	2	14.5	2	100	0	58	48	0	0	51	1.00
310025--310069	24	2.0	22	86	8	63	37	4	2	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311046--311073	14	2.0	14	100	0	56	64	0	0	35	0.94
311031--311072	22	1.9	22	90	9	68	66	2	0	30	1.04
312244--312275	2	16.0	2	100	0	64	50	0	0	50	1.00
313274--313316	22	2.0	22	95	0	77	48	0	0	51	1.00
313357--313411	26	2.1	26	83	6	67	54	3	3	38	1.36
313341--313425	23	3.5	25	76	12	70	55	2	2	40	1.26
313974--314028	6	9.2	6	78	11	51	40	1	0	58	1.09
314259--314301	9	4.8	9	82	8	52	37	0	0	62	0.95
314247--314301	9	6.1	9	76	16	51	40	0	1	58	1.09
315098--315387	50	5.7	50	76	9	255	32	14	20	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22