genome.fa.s167.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  7  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904734--904800	22	3.2	22	76	19	56	50	0	2	46	1.16
904781--904806	13	2.0	13	100	0	52	46	0	0	53	1.00
905023--905063	21	1.9	22	85	5	57	43	0	0	56	0.99
906858--906902	16	2.8	17	75	21	51	35	2	0	62	1.08
907448--907525	26	3.0	26	78	10	72	51	0	0	48	1.00
910589--910630	22	1.9	22	90	9	68	61	0	0	38	0.96
911018--911049	2	16.0	2	100	0	64	50	0	0	50	1.00
911220--911256	15	2.2	18	86	13	53	35	0	0	64	0.94
913286--913329	22	2.0	21	82	4	52	38	6	2	52	1.41
917436--917485	24	2.1	23	85	10	66	42	0	0	58	0.98
917789--917832	20	2.2	20	91	0	70	59	0	6	34	1.24
917918--917986	19	3.8	19	72	12	56	57	0	0	42	0.98
917944--918003	18	3.5	17	68	19	52	53	0	1	45	1.10
917944--918065	19	7.2	18	66	26	61	55	2	0	40	1.19
917948--918092	34	4.2	33	73	20	120	56	2	0	40	1.19
920860--920945	25	3.3	26	78	13	81	38	0	1	60	1.04
920867--920941	38	2.0	38	86	5	107	40	0	1	58	1.06
920837--920946	27	4.1	27	72	18	95	35	0	1	62	1.06
920867--920942	20	4.0	20	76	13	79	39	0	1	59	1.06
924248--924285	20	1.9	20	84	10	51	36	2	0	60	1.11
928362--928400	17	2.3	17	86	0	51	58	0	0	41	0.98
928824--928876	17	3.2	17	72	20	58	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928824--928922	32	3.0	32	79	8	101	54	0	1	44	1.06
928947--928991	21	2.1	21	83	0	54	57	0	0	42	0.98
929141--929193	17	3.2	17	72	20	58	52	0	0	47	1.00
928785--929355	317	1.8	317	98	0	1097	44	4	5	45	1.47
929141--929239	32	3.0	32	79	8	101	54	0	1	44	1.06
930938--931011	24	3.1	25	78	7	82	60	0	0	39	0.97
931066--931121	18	2.9	20	76	10	62	58	0	1	39	1.08
931104--931193	39	2.4	37	83	10	112	57	1	1	40	1.13
931543--931597	27	2.0	27	100	0	110	25	27	18	29	1.98
931547--931605	27	2.2	27	93	0	100	28	22	16	32	1.96
931698--931760	26	2.5	25	79	7	65	34	3	3	58	1.30
937211--937257	21	2.2	22	81	11	53	38	2	0	59	1.09
937504--937645	63	2.3	63	83	8	184	41	12	4	40	1.65
937870--937905	19	1.9	18	88	5	54	36	8	8	47	1.64
938065--938104	20	2.0	20	85	5	53	60	0	0	40	0.97
943907--943941	2	17.5	2	100	0	70	51	0	48	0	1.00
948748--948772	2	12.5	2	100	0	50	48	0	0	52	1.00
949184--949217	14	2.4	14	85	0	50	44	0	0	55	0.99
950779--950810	13	2.3	15	89	10	50	46	0	0	53	1.00
951002--951052	21	2.4	20	81	12	57	66	0	0	33	0.92
952093--952126	12	2.7	13	86	9	52	64	0	0	35	0.94
952182--952229	9	5.1	9	80	9	51	39	0	2	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952241--952287	24	1.9	25	83	12	62	53	0	2	44	1.12
952311--952342	15	2.0	17	88	11	50	28	0	0	71	0.86
953277--953321	23	1.9	24	81	4	56	46	2	2	48	1.26
955103--955179	40	1.9	40	86	0	109	45	0	0	54	0.99
955409--955454	21	2.1	23	84	8	60	34	6	0	58	1.24
956758--956822	30	2.3	29	82	10	80	60	0	0	40	0.97
956746--956802	13	4.5	12	74	25	55	64	0	0	35	0.93
959802--959867	24	2.6	27	72	13	68	51	1	3	43	1.26
960638--960691	26	2.1	26	86	6	74	35	0	9	55	1.32
960673--960706	6	5.7	6	89	0	50	41	0	2	55	1.15
960818--960890	30	2.3	31	81	13	87	36	1	0	61	1.05
961847--961940	23	4.2	22	77	12	68	51	0	1	47	1.07
961855--961925	30	2.3	31	81	13	85	46	0	1	52	1.09
961852--961937	7	11.9	7	71	14	59	47	0	1	51	1.08
961887--961938	23	2.2	25	89	6	81	50	0	1	48	1.12
961892--961941	18	2.8	18	81	9	57	52	0	2	46	1.12
962631--962660	13	2.4	12	89	10	51	50	0	0	50	1.00
963466--963534	14	4.3	15	70	23	52	49	0	2	47	1.16
964054--964137	11	7.5	11	74	21	68	35	0	1	63	1.03
964084--964141	20	2.8	20	82	7	64	32	0	1	65	1.03
964054--964137	31	2.7	32	81	9	93	35	0	1	63	1.03
964053--964163	36	3.2	34	76	13	111	37	0	2	59	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964620--964697	5	16.2	5	70	17	58	58	0	2	38	1.12
964607--964655	21	2.3	20	83	16	64	67	0	0	32	0.91
964607--964687	17	4.9	17	74	15	71	61	0	2	35	1.09
965135--965169	15	2.3	15	95	0	61	22	14	5	57	1.59
981711--981787	25	3.1	25	69	3	66	49	1	3	45	1.28
981715--981787	24	3.0	22	70	18	56	49	1	4	45	1.29
982390--982451	13	5.1	12	75	9	54	64	0	0	35	0.94
982390--982435	12	3.8	12	78	18	51	63	0	0	36	0.95
982432--982495	32	2.0	32	84	3	83	53	0	3	43	1.16
982467--982517	14	3.6	14	80	15	52	56	0	1	41	1.10
982414--982504	29	3.1	29	73	15	80	58	0	2	39	1.10
982419--982538	30	4.0	29	74	17	77	58	0	1	40	1.08
982477--982546	30	2.4	29	81	9	79	58	0	0	41	0.98
988028--988105	19	4.2	20	70	23	64	38	1	0	60	1.05
988643--988686	15	2.8	15	80	19	54	77	0	20	2	0.88
988701--988759	27	2.1	28	81	9	68	37	1	3	57	1.25
990935--990975	21	2.0	21	90	0	64	41	4	53	0	1.22
993406--993433	2	14.0	2	100	0	56	0	50	0	50	1.00
995916--995944	2	15.0	2	92	7	51	51	0	48	0	1.00
1002139--1002179	12	3.3	12	83	6	55	46	2	0	51	1.14
1002139--1002173	13	2.8	13	91	4	54	51	2	0	45	1.16
1002228--1002271	23	2.0	22	86	4	61	75	0	2	22	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002356--1002398	13	3.3	12	83	9	50	51	0	2	46	1.13
1003343--1003492	11	13.5	11	68	16	60	59	0	0	40	1.02
1003353--1003401	25	1.9	26	91	4	82	67	0	0	32	0.91
1003348--1003508	36	4.9	32	71	16	109	59	0	0	39	1.02
1003730--1003803	35	2.1	35	94	0	130	43	18	4	33	1.69
1006758--1006803	11	4.0	11	78	10	56	32	2	0	65	1.05
1006655--1006806	58	2.6	57	73	15	141	40	1	1	56	1.16
1007278--1007320	18	2.4	18	76	0	50	41	0	0	58	0.98
1007946--1007984	17	2.4	17	82	4	53	25	5	10	58	1.51
1008516--1008588	20	3.5	20	78	9	67	42	0	1	56	1.08
1016061--1016086	8	3.2	8	100	0	52	34	0	0	65	0.93
1016108--1016247	18	7.3	19	68	21	78	32	0	1	65	1.01
1016050--1016256	67	2.9	69	84	11	235	35	0	0	63	1.05
1017187--1017222	2	18.0	2	100	0	72	50	0	0	50	1.00
1023181--1023251	32	2.3	31	82	4	88	45	0	0	54	0.99
1023331--1023371	20	2.0	21	90	4	66	58	0	0	41	0.98
1024001--1024165	84	2.0	84	95	0	294	20	21	21	36	1.95
1025825--1025865	13	3.2	13	89	6	57	82	2	14	0	0.76
1025837--1025865	7	4.3	7	91	8	51	86	0	13	0	0.58
1033897--1034285	194	2.0	194	87	2	557	38	19	27	14	1.91
1035735--1035775	14	2.6	16	81	14	50	78	2	19	0	0.87
1035786--1035828	20	2.1	21	91	4	70	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035844--1035907	20	3.2	20	78	10	69	31	1	4	62	1.25
1037249--1037300	17	3.1	17	83	8	63	48	0	3	48	1.20
1037350--1037388	3	13.0	3	100	0	78	66	0	0	33	0.92
1037554--1037604	11	4.5	11	78	9	50	23	0	1	74	0.92
1038174--1038237	27	2.4	28	79	10	71	42	0	3	54	1.16
1038295--1038334	11	3.8	10	83	9	53	32	0	0	67	0.91
1038390--1038430	17	2.5	17	84	15	59	53	0	0	46	1.00
1043759--1043817	23	2.6	24	79	12	63	45	1	0	52	1.10
1043840--1043885	17	2.8	17	81	15	60	45	0	2	52	1.13
1043784--1043907	58	2.1	58	76	8	128	46	0	0	51	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22