genome.fa.s167.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  3  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315074--315387	100	3.1	99	85	6	346	31	14	19	34	1.91
315204--315416	104	2.0	104	100	0	426	34	15	21	29	1.93
319739--319895	50	3.1	50	89	0	233	26	18	21	34	1.96
321470--321542	15	4.7	15	71	14	58	34	0	0	65	0.93
321467--321546	34	2.4	33	80	13	85	36	0	0	63	0.94
321475--321545	34	2.0	35	89	8	108	38	0	0	61	0.96
321490--321562	34	2.1	34	82	5	85	36	2	2	57	1.27
323740--323789	17	2.9	17	86	13	75	52	0	0	48	1.00
324845--324879	2	17.0	2	88	5	52	51	0	2	45	1.16
324978--325020	19	2.2	20	87	8	61	37	0	0	62	0.95
325404--325429	6	4.3	6	100	0	52	15	0	0	84	0.62
325533--325581	10	4.5	10	76	18	53	24	6	2	67	1.24
329841--329907	29	2.3	29	75	10	73	44	1	0	53	1.09
336395--336429	16	2.2	16	89	0	52	22	8	2	65	1.34
336527--336585	19	3.2	19	87	2	84	28	22	15	33	1.94
337340--337387	24	2.0	24	95	0	87	39	22	4	33	1.74
340335--340361	14	1.9	14	100	0	54	55	0	0	44	0.99
340553--340587	2	17.5	2	100	0	70	51	0	0	48	1.00
341130--341159	3	9.7	3	92	7	51	70	0	0	30	0.88
342653--342697	17	2.6	17	80	16	56	53	0	0	46	1.00
342675--342756	28	2.9	29	80	12	98	57	2	0	40	1.12
343212--343245	6	5.7	6	96	0	59	50	0	2	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343245--343277	16	2.1	16	88	11	50	42	0	0	57	0.98
343258--343303	25	1.9	23	86	8	65	50	0	0	50	1.00
343507--343545	6	6.5	6	85	8	53	64	0	0	35	0.94
343518--343566	25	2.0	25	84	8	64	61	0	0	38	0.96
343491--343559	18	3.9	18	74	16	63	57	1	1	39	1.16
343640--343671	13	2.3	15	89	10	50	31	6	3	59	1.38
344689--344734	23	2.0	24	83	12	60	63	8	0	28	1.24
345541--345673	47	3.0	41	69	17	95	42	0	0	57	1.04
345570--345643	30	2.4	31	78	13	80	44	0	0	55	0.99
345592--345660	22	3.2	22	76	9	63	40	0	0	59	0.97
346132--346175	22	2.0	22	86	13	63	68	4	4	22	1.27
349249--349294	22	2.1	22	88	8	67	41	0	0	58	0.98
349771--349795	2	12.5	2	100	0	50	52	0	0	48	1.00
351067--351108	20	2.0	21	90	4	68	42	0	0	57	0.99
351682--351714	17	1.9	17	88	11	50	42	0	3	54	1.15
354035--354068	12	2.8	12	90	0	50	55	2	0	41	1.15
356319--356348	12	2.6	11	90	10	51	90	0	0	10	0.47
359665--359714	11	4.5	11	72	18	50	72	0	0	28	0.86
359665--359711	24	2.0	25	83	8	62	72	0	0	27	0.85
360981--361005	2	12.5	2	100	0	50	52	0	0	48	1.00
361741--361787	21	2.4	19	86	10	67	72	0	0	27	0.85
362832--362897	30	2.2	30	97	0	123	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362901--362945	17	2.6	17	76	13	56	55	0	0	44	0.99
362919--363007	27	3.3	28	76	16	98	66	1	0	32	0.99
366800--366869	36	1.9	37	88	2	106	58	4	7	30	1.44
367242--367288	21	2.4	19	86	10	67	72	0	0	27	0.85
368340--368405	30	2.2	30	91	5	107	42	3	0	54	1.15
368409--368453	17	2.6	17	76	13	56	55	0	0	44	0.99
368427--368495	28	2.5	28	83	4	86	65	1	1	31	1.11
368446--368510	27	2.4	26	77	10	67	66	1	3	29	1.16
369908--369956	23	2.2	21	82	10	62	20	2	12	65	1.35
375192--375253	26	2.4	26	81	2	72	54	1	1	41	1.19
375221--375336	36	3.2	37	77	18	134	55	0	1	43	1.10
375317--375350	10	3.1	11	87	12	52	55	0	0	44	0.99
375277--375379	46	2.2	47	81	8	131	59	0	1	38	1.09
375549--375581	17	1.9	17	100	0	66	60	3	6	30	1.36
380400--380438	2	19.5	2	94	0	69	51	2	0	46	1.14
384656--384696	2	21.0	2	95	5	75	48	0	0	51	1.00
387017--387046	2	15.0	2	100	0	60	50	0	0	50	1.00
390147--390192	2	23.5	2	82	4	58	45	0	0	54	0.99
391572--391616	2	22.5	2	95	0	81	51	2	0	46	1.13
394070--394120	21	2.5	20	73	17	52	62	0	1	35	1.06
399871--399907	2	18.5	2	94	0	65	51	2	0	45	1.15
400406--400450	20	2.1	22	92	8	76	40	0	4	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400421--400484	31	2.2	30	83	8	78	46	4	3	45	1.39
401899--401932	14	2.4	14	90	0	50	29	0	17	52	1.45
402470--402494	3	8.3	3	100	0	50	68	0	32	0	0.90
404912--404957	2	23.0	2	100	0	92	50	0	0	50	1.00
405772--405810	10	3.7	10	83	12	51	25	0	2	71	0.98
406125--406157	2	16.5	2	93	0	57	45	0	3	51	1.16
406857--406907	16	3.2	16	77	8	50	47	7	5	39	1.57
406943--406968	2	13.0	2	100	0	52	50	0	0	50	1.00
408162--408200	2	19.5	2	100	0	78	48	0	0	51	1.00
408267--408371	30	3.5	29	78	10	113	39	4	1	54	1.33
412674--412849	96	1.8	96	82	7	230	56	2	18	21	1.54
413042--413222	89	2.1	88	94	4	321	41	5	6	46	1.52
413144--413465	174	1.8	172	82	3	401	39	6	7	46	1.58
415648--415672	8	3.1	8	100	0	50	48	12	12	28	1.76
416033--416073	16	2.5	17	88	11	68	48	0	0	51	1.00
423926--423968	13	3.4	12	84	9	50	65	4	2	27	1.25
423980--424039	28	2.1	28	81	6	68	38	0	1	60	1.07
424073--424118	24	2.0	23	87	8	67	43	2	0	54	1.12
426303--426330	3	9.3	3	100	0	56	67	0	32	0	0.91
429945--430013	2	34.5	2	85	0	93	42	0	7	50	1.30
432003--432041	2	19.5	2	100	0	78	48	0	0	51	1.00
432111--432198	26	3.2	26	76	15	81	39	2	2	55	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432108--432208	30	3.5	28	80	10	116	39	2	1	55	1.26
436897--437078	89	2.1	89	94	3	323	42	6	6	45	1.53
438015--438056	19	2.3	18	84	8	57	54	0	0	45	0.99
439422--439448	12	2.2	12	100	0	54	48	7	11	33	1.67
439485--439509	8	3.1	8	100	0	50	48	12	12	28	1.76
439823--439874	22	2.4	22	74	6	52	55	0	3	40	1.18
439869--439909	16	2.5	17	88	11	68	48	0	0	51	1.00
443045--443087	18	2.4	18	84	3	52	46	2	4	46	1.36
443064--443090	14	1.9	14	100	0	54	44	0	7	48	1.31
447801--447843	13	3.4	12	84	9	50	65	4	2	27	1.25
447855--447914	28	2.1	28	81	6	68	38	0	1	60	1.07
447948--447993	24	2.0	23	87	8	67	43	2	0	54	1.12
450190--450217	3	9.3	3	100	0	56	67	0	32	0	0.91
453831--453869	20	2.0	20	89	0	60	33	0	15	51	1.44
455867--455907	2	20.5	2	94	0	73	46	2	0	51	1.14
455974--456075	25	3.5	29	75	15	104	39	2	1	55	1.26
456535--456587	27	2.0	27	82	7	65	49	3	1	45	1.31
460746--460927	90	2.1	88	92	5	305	41	6	6	46	1.53
461861--461902	19	2.3	18	84	8	57	54	0	0	45	0.99
463339--463363	8	3.1	8	100	0	50	48	12	12	28	1.76
463716--463764	15	3.1	15	78	18	55	48	0	0	51	1.00
463724--463764	16	2.5	17	88	11	68	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466904--466947	18	2.4	18	84	0	52	45	2	4	47	1.35
466924--466950	14	1.9	14	100	0	54	44	0	7	48	1.31
471716--471772	20	2.8	21	79	10	64	29	1	1	66	1.12
471850--471888	17	2.3	17	82	8	53	35	0	0	64	0.94
472452--472486	16	2.2	16	89	0	52	42	5	11	40	1.65
473707--473749	23	1.9	23	85	4	61	67	0	2	30	1.03
475998--476071	20	3.8	20	72	24	61	39	0	0	60	0.97
475996--476049	27	2.0	27	81	0	63	35	0	0	64	0.94
476987--477035	19	2.4	19	80	19	55	32	0	0	67	0.91
477457--477506	25	2.0	24	88	3	73	34	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22