genome.fa.s167.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  11  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1421655--1421875	105	2.1	105	97	0	415	17	21	11	50	1.77
1423380--1423447	23	3.1	22	72	17	61	47	0	0	52	1.00
1423631--1423691	21	2.7	22	82	10	70	70	3	0	26	1.02
1423681--1423738	22	2.8	20	75	12	55	55	0	1	43	1.10
1424028--1424103	32	2.3	33	82	13	86	55	0	0	44	0.99
1438183--1438220	2	19.5	2	83	5	51	44	0	5	50	1.24
1440168--1440271	32	3.2	32	72	4	93	42	24	15	18	1.88
1440627--1440739	48	2.4	46	81	11	124	51	0	1	46	1.17
1440745--1440785	20	2.1	19	86	13	57	46	0	0	53	1.00
1440741--1440818	26	2.9	27	81	7	79	46	0	0	53	1.00
1441920--1441951	16	2.0	16	93	0	55	46	0	0	53	1.00
1442239--1442317	22	3.5	22	79	11	63	46	0	0	53	1.00
1442260--1442364	21	5.4	19	74	17	74	45	0	0	54	0.99
1442262--1442318	22	2.6	22	78	10	64	40	0	0	59	0.97
1442402--1442441	20	2.0	20	95	0	71	15	22	20	42	1.88
1442530--1442588	21	2.9	22	78	12	72	38	1	0	59	1.08
1444016--1444055	2	20.0	2	94	0	71	47	0	2	50	1.14
1448384--1448422	20	2.0	19	95	5	69	51	2	0	46	1.14
1449360--1449401	16	2.6	17	85	7	52	54	0	0	45	0.99
1452353--1452396	3	14.7	3	90	9	72	68	2	0	29	1.02
1452356--1452397	20	2.0	21	95	4	77	69	2	0	28	1.01
1453273--1453313	21	2.0	21	85	9	57	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1453341--1453442	49	2.1	49	80	14	113	42	0	0	56	1.05
1453406--1453457	27	2.0	27	85	7	72	34	0	1	63	1.06
1453378--1453441	16	4.0	16	70	18	53	35	0	1	62	1.05
1455311--1455427	38	3.1	39	92	3	202	35	13	15	35	1.87
1463216--1463270	21	2.6	22	81	18	73	54	0	0	45	0.99
1463335--1463373	14	2.8	14	81	14	53	66	2	0	30	1.05
1468971--1469013	18	2.4	17	88	11	59	46	0	0	53	1.00
1470853--1470877	13	1.9	13	100	0	50	64	4	0	32	1.12
1475412--1475450	21	2.0	21	85	10	55	48	7	5	38	1.54
1479990--1480040	12	4.1	12	82	9	66	39	0	0	60	0.97
1479990--1480041	20	2.7	20	80	16	65	40	0	0	59	0.97
1479992--1480049	6	9.3	6	75	7	53	41	0	1	56	1.09
1479992--1480044	26	2.1	24	89	6	79	39	0	0	60	0.97
1485659--1485711	20	2.7	19	80	8	61	41	0	0	58	0.98
1485738--1485770	2	16.5	2	100	0	66	51	0	0	48	1.00
1487793--1487846	27	2.0	28	92	3	92	44	5	18	31	1.73
1492506--1492531	12	2.2	12	100	0	52	15	34	26	23	1.94
1492534--1492584	12	3.9	12	78	16	57	43	5	11	39	1.66
1493643--1493669	2	13.5	2	100	0	54	51	48	0	0	1.00
1494233--1494324	44	2.1	44	91	0	148	33	14	8	43	1.76
1499185--1499214	13	2.3	13	94	0	51	53	0	0	46	1.00
1507480--1507538	13	4.6	13	75	12	50	72	0	25	1	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1507479--1507528	17	2.9	17	84	3	55	70	0	28	2	0.99
1507614--1507665	24	2.2	24	86	6	70	23	7	3	65	1.35
1508666--1508703	16	2.4	16	90	0	58	55	0	0	44	0.99
1508947--1509033	35	2.4	36	84	5	122	62	8	0	29	1.24
1510515--1510550	19	1.9	18	88	5	54	36	5	0	58	1.22
1511018--1511088	15	4.9	15	73	22	62	26	0	2	70	1.01
1511025--1511080	11	5.4	11	72	23	50	26	0	1	71	0.96
1515184--1515232	20	2.3	22	83	13	59	42	0	0	57	0.99
1516669--1516719	25	2.1	24	88	3	75	72	1	21	3	1.11
1518361--1518612	128	2.0	128	92	1	416	34	13	14	37	1.85
1519427--1519463	15	2.4	16	90	4	58	35	16	0	48	1.46
1519555--1519591	14	2.6	15	83	12	51	78	0	21	0	0.75
1522174--1522246	27	2.8	24	69	15	56	38	2	0	58	1.12
1522495--1522530	13	2.8	13	91	0	54	58	2	0	38	1.13
1522488--1522565	15	5.3	14	77	14	77	60	1	0	38	1.05
1522485--1522565	30	2.7	30	84	3	101	59	1	0	39	1.05
1523329--1523414	45	1.9	45	90	0	136	40	6	6	45	1.58
1523806--1523965	82	2.0	81	93	1	275	45	6	7	40	1.57
1525331--1525387	22	2.8	21	79	10	73	29	0	1	68	1.00
1525331--1525386	11	5.4	11	69	26	50	28	0	1	69	0.98
1526304--1526350	24	2.0	24	87	8	69	14	34	10	40	1.81
1529892--1529964	35	2.2	33	82	7	85	27	15	13	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1530202--1530252	22	2.5	20	70	14	50	35	3	3	56	1.36
1535226--1535306	26	2.9	28	78	12	78	59	0	0	40	0.98
1538151--1538211	30	2.1	29	84	3	77	44	0	0	55	0.99
1539342--1539398	17	3.0	20	75	21	59	43	0	0	56	0.99
1539391--1539419	13	2.1	14	93	6	51	55	0	0	44	0.99
1541704--1541733	2	15.0	2	100	0	60	0	50	0	50	1.00
1545320--1545395	39	1.9	39	84	5	100	21	28	17	32	1.95
1552343--1552368	2	13.0	2	100	0	52	50	0	50	0	1.00
1552767--1552845	25	3.2	25	76	5	90	62	0	0	37	0.96
1552972--1552997	13	2.0	13	100	0	52	30	0	0	69	0.89
1554247--1554282	17	2.1	17	100	0	72	44	5	0	50	1.25
1555282--1555312	2	15.5	2	100	0	62	0	48	0	51	1.00
1558951--1558980	4	7.5	4	100	0	60	76	0	0	23	0.78
1560112--1560160	18	2.7	17	78	12	53	34	4	2	59	1.28
1560112--1560160	17	2.6	19	78	15	57	34	4	2	59	1.28
1568616--1568641	2	13.0	2	100	0	52	50	0	0	50	1.00
1568862--1568973	8	14.0	8	67	20	65	58	1	0	39	1.08
1568862--1568925	32	2.0	33	87	9	96	56	0	0	43	0.99
1568839--1568973	48	2.8	49	72	15	120	59	2	0	37	1.13
1569108--1569155	23	2.1	23	84	0	60	12	31	10	45	1.76
1570113--1570138	2	13.0	2	100	0	52	50	0	0	50	1.00
1570895--1570941	25	1.9	25	83	12	62	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1572081--1572114	18	1.9	18	88	5	52	38	2	5	52	1.41
1572437--1572462	2	13.0	2	100	0	52	50	0	0	50	1.00
1575604--1575660	2	30.0	2	76	16	59	45	1	1	50	1.22
1575563--1575618	28	2.0	27	83	10	69	33	3	3	58	1.32
1575563--1575647	27	3.0	27	80	13	84	36	3	3	56	1.34
1580875--1580922	11	4.5	11	75	15	55	64	0	0	35	0.94
1580886--1580981	10	9.4	10	69	15	54	58	0	0	41	0.98
1580874--1580981	32	3.4	32	81	8	96	58	0	0	41	0.98
1580860--1580981	23	5.2	23	74	19	92	57	0	0	41	1.04
1580940--1580980	18	2.3	18	87	8	57	58	0	0	41	0.98
1583340--1583374	2	17.5	2	100	0	70	51	0	0	48	1.00
1586231--1586281	15	3.1	15	77	20	57	35	0	0	64	0.94
1586242--1586282	19	2.3	19	88	12	61	31	0	0	68	0.90
1594862--1594887	2	13.0	2	100	0	52	50	0	50	0	1.00
1596721--1596755	2	17.5	2	100	0	70	48	0	0	51	1.00
1597573--1598014	218	2.0	216	85	3	582	19	17	33	29	1.95
1598867--1598902	15	2.5	15	86	4	56	58	0	2	38	1.13
1598943--1599012	33	2.2	32	82	12	81	52	0	4	42	1.20
1599065--1599115	13	3.6	14	80	17	61	50	0	0	49	1.00
1599075--1599115	15	2.8	15	82	17	59	48	0	0	51	1.00
1599062--1599115	29	2.0	26	89	10	81	50	0	0	50	1.00
1599527--1599646	40	2.7	46	78	14	128	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1599494--1599596	31	3.0	33	81	9	102	59	0	0	39	1.04
1599494--1599645	11	13.6	11	68	21	68	59	0	0	39	1.02
1600390--1600414	2	12.5	2	100	0	50	48	0	0	52	1.00
1603526--1603564	20	2.0	19	85	5	51	51	0	2	46	1.14
1605880--1605934	21	2.6	21	80	8	58	36	1	1	60	1.18
1606695--1606737	4	10.8	4	100	0	86	25	0	23	51	1.49
1613276--1613330	21	2.8	21	78	10	55	32	0	0	67	0.91
1614979--1615389	221	1.9	222	84	2	567	22	18	32	26	1.97
1616926--1616955	15	2.0	15	93	0	51	40	0	16	43	1.48
1617106--1617144	20	1.9	21	89	5	62	51	2	0	46	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22