genome.fa.s167.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  21  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3631589--3631627	13	2.9	14	84	7	53	30	5	2	61	1.31
3631588--3631634	14	3.4	14	79	5	51	29	4	2	63	1.25
3631883--3631910	3	9.3	3	100	0	56	67	0	32	0	0.91
3632614--3632638	13	1.9	13	100	0	50	48	20	0	32	1.50
3642535--3642567	16	2.1	16	94	5	59	3	6	0	90	0.52
3644316--3644347	16	1.9	17	93	6	57	31	0	0	68	0.90
3648146--3648170	2	12.5	2	100	0	50	0	0	48	52	1.00
3650967--3651007	2	20.5	2	94	0	73	0	48	2	48	1.14
3655268--3655321	2	27.0	2	100	0	108	50	0	0	50	1.00
3655342--3655383	17	2.5	17	80	3	50	61	0	0	38	0.96
3663441--3663501	30	2.1	29	90	3	95	13	22	14	49	1.78
3668586--3668616	14	2.2	14	94	0	53	41	0	0	58	0.98
3668661--3668697	14	2.9	13	85	14	51	67	0	0	32	0.91
3669792--3669841	20	2.6	18	84	9	55	42	0	10	48	1.37
3672717--3672776	29	2.1	29	100	0	120	21	23	13	41	1.88
3675410--3675451	19	2.1	21	83	16	54	33	0	9	57	1.31
3678578--3678607	3	10.3	3	92	7	53	30	0	0	70	0.88
3678824--3678859	2	18.0	2	100	0	72	50	0	0	50	1.00
3680336--3680372	17	2.2	17	90	9	58	62	0	0	37	0.96
3680346--3680384	8	4.8	8	84	6	51	71	0	0	28	0.86
3682454--3682498	2	22.5	2	100	0	90	48	0	0	51	1.00
3687058--3687152	17	5.3	17	73	13	50	58	2	2	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3687077--3687153	39	2.0	39	84	5	102	54	1	2	41	1.22
3687069--3687147	11	7.7	11	74	17	55	58	1	2	37	1.20
3687069--3687152	21	4.2	20	75	11	75	58	1	2	38	1.19
3701739--3701795	23	2.5	22	81	18	73	36	0	0	63	0.95
3702956--3703028	27	2.7	27	75	10	76	53	8	0	38	1.31
3705937--3705976	13	3.2	13	82	3	55	45	0	0	55	0.99
3706378--3706444	27	2.4	27	80	2	71	46	7	1	44	1.40
3710353--3710389	19	1.9	19	88	0	56	45	0	0	54	1.00
3710378--3710415	20	2.0	20	84	5	51	34	2	2	60	1.24
3711007--3711043	6	6.5	6	81	12	51	43	0	0	56	0.99
3711008--3711039	16	2.0	16	93	0	55	46	0	0	53	1.00
3713852--3713979	24	5.2	23	68	20	55	43	3	0	52	1.22
3713853--3713927	28	2.9	25	81	13	80	41	2	0	56	1.13
3717661--3717752	30	3.1	30	84	3	114	11	17	17	53	1.73
3718380--3718406	2	13.5	2	100	0	54	48	0	0	51	1.00
3718653--3718678	2	13.0	2	100	0	52	50	0	0	50	1.00
3723620--3723647	2	14.0	2	100	0	56	50	0	0	50	1.00
3730826--3730855	2	15.0	2	100	0	60	50	0	0	50	1.00
3736441--3736475	2	17.5	2	100	0	70	48	0	0	51	1.00
3744021--3744136	48	2.4	48	76	16	114	40	1	0	56	1.15
3747061--3747085	3	8.3	3	100	0	50	68	0	0	32	0.90
3751814--3751852	2	19.5	2	94	0	69	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3752072--3752136	21	3.0	21	78	10	69	46	0	4	49	1.22
3754611--3754642	3	10.7	3	100	0	64	31	0	0	68	0.90
3755088--3755124	17	2.2	17	100	0	74	35	32	5	27	1.79
3759069--3759105	2	18.5	2	100	0	74	51	0	0	48	1.00
3785528--3785553	2	13.0	2	100	0	52	50	0	0	50	1.00
3785899--3785940	19	2.2	19	87	8	59	30	0	4	64	1.14
3786277--3786330	19	3.1	18	84	10	67	51	5	0	42	1.25
3786337--3786369	13	2.5	13	90	9	50	45	0	3	51	1.16
3786780--3786868	38	2.3	37	77	12	99	46	2	0	51	1.13
3787907--3787976	18	4.0	18	77	3	63	62	0	4	32	1.14
3788093--3788152	30	2.0	31	83	3	77	53	1	1	43	1.20
3797437--3797465	2	14.5	2	100	0	58	0	0	48	51	1.00
3799099--3799131	3	11.0	3	93	0	57	36	0	0	63	0.95
3804019--3804050	3	10.7	3	100	0	64	68	0	31	0	0.90
3804309--3804348	2	20.0	2	100	0	80	50	0	0	50	1.00
3805693--3805727	2	18.0	2	88	5	54	51	2	0	45	1.16
3806197--3806248	7	7.1	7	81	14	52	36	0	1	61	1.07
3806223--3806259	17	2.2	16	90	4	56	40	0	0	59	0.97
3814940--3814964	13	1.9	13	100	0	50	56	8	36	0	1.29
3819779--3819804	1	26.0	1	100	0	52	100	0	0	0	0.00
3824246--3824286	14	3.0	14	80	16	50	17	0	0	82	0.66
3824991--3825235	126	1.9	126	93	0	418	31	5	15	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3826545--3826577	2	16.5	2	100	0	66	51	0	0	48	1.00
3829486--3829516	2	15.5	2	100	0	62	0	48	0	51	1.00
3829516--3829580	2	32.5	2	93	0	94	49	6	0	44	1.27
3829862--3829906	17	2.5	17	85	7	54	51	2	4	42	1.34
3830768--3830799	16	2.0	16	93	0	55	46	3	0	50	1.17
3832815--3832861	3	15.7	3	95	0	85	63	0	34	2	1.06
3840024--3840109	43	2.0	44	82	11	106	52	1	1	45	1.16
3840073--3840132	25	2.4	25	82	0	75	55	1	0	43	1.10
3841422--3841451	12	2.5	12	94	0	51	33	0	10	56	1.32
3844990--3845016	2	13.5	2	100	0	54	48	0	0	51	1.00
3852641--3852679	2	19.5	2	100	0	78	0	51	0	48	1.00
3853847--3853929	29	3.0	28	73	19	75	50	0	4	44	1.23
3854304--3854364	27	2.4	25	81	10	61	34	1	14	49	1.54
3854549--3854627	2	40.5	2	74	18	60	46	5	2	45	1.38
3869743--3869790	18	2.6	17	83	12	51	58	35	0	6	1.23
3870939--3870974	5	7.2	5	90	9	56	22	2	0	75	0.94
3870939--3870966	14	2.0	14	100	0	56	21	0	0	78	0.75
3876827--3876856	3	10.0	3	100	0	60	0	33	0	66	0.92
3877023--3877053	16	1.9	16	93	0	53	32	6	12	48	1.67
3885028--3885068	3	13.7	3	100	0	82	31	0	0	68	0.90
3887516--3887636	60	2.0	60	88	3	181	20	23	5	50	1.69
3888280--3888312	2	17.0	2	87	6	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3892370--3892405	2	18.0	2	94	0	63	47	0	2	50	1.15
3894071--3894097	14	1.9	14	100	0	54	81	0	18	0	0.69
3896325--3896449	62	2.0	62	96	0	232	29	15	14	40	1.86
3899274--3899324	17	2.8	18	74	14	59	45	1	1	50	1.24
3901066--3901178	58	1.9	58	96	0	208	45	12	7	34	1.71
3908492--3908534	2	21.5	2	100	0	86	48	0	0	51	1.00
3912053--3912077	2	12.5	2	100	0	50	52	0	0	48	1.00
3913695--3913721	2	13.5	2	100	0	54	51	0	0	48	1.00
3917127--3917170	2	22.0	2	95	0	79	50	0	2	47	1.13
3918510--3918634	54	2.3	53	86	6	180	45	3	0	51	1.17
3926802--3926846	2	22.5	2	100	0	90	51	0	0	48	1.00
3935643--3935683	6	7.0	6	88	5	66	14	19	34	31	1.92
3936649--3936674	2	13.0	2	100	0	52	50	0	0	50	1.00
3937524--3937570	4	11.8	4	90	0	58	48	6	0	44	1.28
3937524--3937570	14	3.4	14	87	0	58	48	6	0	44	1.28
3940919--3940978	30	2.0	30	100	0	120	30	16	16	36	1.91
3942303--3942338	3	12.0	3	100	0	72	33	0	0	66	0.92
3945417--3945457	21	2.0	21	95	0	73	36	17	9	36	1.82
3949489--3949523	2	17.5	2	100	0	70	51	0	48	0	1.00
3949575--3949612	14	2.6	15	83	4	51	36	0	0	63	0.95
3956941--3956976	2	18.0	2	100	0	72	50	0	50	0	1.00
3959434--3959462	15	2.0	15	93	6	51	82	0	10	6	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3963456--3963486	2	15.5	2	100	0	62	48	0	0	51	1.00
3972281--3972318	5	7.8	5	88	11	53	81	0	0	18	0.69
3972466--3972515	18	2.7	18	84	6	55	46	2	0	52	1.12
3972889--3972922	14	2.4	14	90	0	50	61	2	2	32	1.26
3973063--3973098	3	12.0	3	100	0	72	66	0	0	33	0.92
3980076--3980140	33	2.0	33	100	0	130	50	12	9	27	1.70
3982043--3982091	2	24.5	2	100	0	98	0	48	0	51	1.00
3982879--3982912	6	5.7	6	96	0	59	0	44	0	55	0.99
3982915--3982948	2	17.0	2	100	0	68	0	50	0	50	1.00
3982886--3982947	18	3.2	18	82	17	56	0	50	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22