genome.fa.s167.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  5  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648431--648475	22	2.0	22	82	4	54	17	17	15	48	1.81
649174--649279	45	2.2	48	81	6	128	29	21	30	18	1.97
649312--649785	32	14.8	32	94	0	779	15	18	34	31	1.93
649771--650509	27	26.9	27	89	3	1066	29	13	33	23	1.93
649771--650509	55	13.5	54	90	2	1066	29	13	33	23	1.93
649771--650533	82	9.2	81	89	3	1069	29	14	32	23	1.94
658346--658386	11	3.5	11	81	12	55	2	19	0	78	0.87
658742--658786	22	2.0	22	82	4	54	17	17	15	48	1.81
661522--661579	20	2.8	20	76	5	53	29	1	24	44	1.63
661556--661613	27	2.1	27	87	6	82	29	3	17	50	1.62
661563--661661	27	3.6	27	78	11	78	33	3	15	48	1.60
661627--661703	28	2.7	29	79	15	81	38	0	12	48	1.42
661629--661709	14	5.9	14	72	12	51	38	0	13	48	1.43
670207--670281	26	2.8	27	74	8	64	44	5	4	46	1.45
670955--670995	18	2.2	19	86	4	57	63	9	4	21	1.44
672231--672287	20	2.9	18	73	16	60	57	0	1	40	1.09
672231--672278	9	5.0	9	76	14	51	60	0	2	37	1.09
680866--680905	2	20.5	2	94	5	73	52	0	47	0	1.00
683103--683137	3	11.7	3	100	0	70	65	0	0	34	0.93
683160--683207	20	2.5	19	74	12	53	47	0	0	52	1.00
683948--684008	30	2.0	32	81	9	74	40	8	4	45	1.55
684647--684698	22	2.3	22	84	12	70	28	1	5	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685032--685083	17	2.8	19	77	14	63	42	0	0	57	0.98
685033--685090	18	3.2	18	76	11	64	44	0	0	55	0.99
685033--685098	18	3.6	18	76	10	62	46	0	0	53	1.00
685111--685152	16	2.4	17	80	15	50	35	2	0	61	1.09
690888--690936	18	2.7	18	83	0	53	44	14	24	16	1.84
691344--691512	91	1.9	90	93	1	293	43	11	4	41	1.59
692006--692084	31	2.6	31	86	6	99	31	20	13	34	1.92
692426--692514	30	2.9	30	81	5	90	30	17	16	34	1.93
691854--692696	420	2.0	420	97	0	1587	36	19	15	28	1.92
697127--697218	31	3.0	31	79	3	105	29	14	20	35	1.92
697190--697302	38	3.0	38	86	2	147	29	17	18	34	1.94
697190--697300	37	2.9	37	85	2	132	29	16	18	35	1.93
705048--705134	42	2.0	42	82	2	102	57	2	1	39	1.19
705084--705117	17	2.0	17	88	0	50	70	0	0	29	0.87
705157--705186	14	2.1	14	93	0	51	76	0	0	23	0.78
705489--705532	23	1.9	23	86	9	63	68	0	2	29	1.02
705546--705607	27	2.6	22	73	23	63	50	0	1	48	1.10
705550--705599	27	1.9	25	88	8	73	50	0	2	48	1.12
707482--707626	17	8.8	17	72	22	114	39	1	0	59	1.06
707479--707638	31	5.0	32	77	17	156	40	1	0	58	1.06
707472--707636	18	9.5	17	73	20	121	39	1	0	59	1.05
707475--707633	48	3.3	48	99	0	309	38	1	0	59	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707884--707923	2	20.0	2	94	0	71	47	0	2	50	1.14
708171--708203	11	3.0	11	83	16	50	21	0	0	78	0.75
708245--708298	18	3.1	18	73	19	51	40	0	1	57	1.09
710210--710240	14	2.3	14	94	5	55	48	0	0	51	1.00
710728--710777	2	25.5	2	89	4	75	50	2	0	48	1.12
711045--711091	11	4.3	11	81	7	51	34	0	2	63	1.06
711107--711225	9	13.0	9	66	19	59	31	3	3	62	1.28
711178--711231	12	4.2	12	78	17	63	27	0	0	72	0.85
711179--711253	16	4.8	16	72	11	57	32	0	1	66	1.00
711877--711938	26	2.3	27	76	13	67	45	0	1	53	1.10
712228--712252	13	1.9	13	100	0	50	36	16	8	40	1.77
712553--712600	25	1.9	25	86	0	69	62	2	0	35	1.07
712568--712605	19	2.1	19	90	5	60	68	0	0	31	0.90
712568--712608	18	2.2	18	86	8	55	68	0	0	31	0.90
712890--712965	25	2.8	26	75	16	75	53	0	0	46	1.00
712968--713007	19	2.1	19	86	9	55	47	0	0	52	1.00
714337--714387	2	25.0	2	90	4	75	45	1	1	50	1.24
714339--714391	27	2.0	27	100	0	106	41	1	3	52	1.30
715231--715269	18	2.2	18	90	0	60	30	7	2	58	1.39
717459--717510	15	3.4	14	78	21	59	53	0	1	44	1.11
717464--717512	10	4.7	10	75	9	53	51	0	0	48	1.00
719358--719389	15	2.1	16	88	11	50	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719346--719423	36	2.1	39	88	11	119	43	0	1	55	1.08
722629--722658	2	15.0	2	92	0	51	50	3	0	46	1.18
722842--722903	19	3.2	19	72	19	56	43	0	0	56	0.99
723748--723794	21	2.1	22	88	7	69	51	6	0	42	1.27
724127--724164	17	2.2	18	90	4	60	57	0	0	42	0.98
724121--724175	28	1.9	28	85	3	74	60	0	0	40	0.97
724715--724744	15	1.9	16	93	6	53	76	3	0	20	0.92
725231--725284	17	3.1	18	84	7	58	72	3	1	22	1.10
726810--726848	20	2.0	20	90	5	62	51	0	0	48	1.00
727104--727139	18	2.0	18	88	0	54	33	0	5	61	1.19
727181--727264	41	2.0	43	84	13	113	50	0	0	50	1.00
728121--728185	28	2.3	27	79	7	67	35	1	0	63	1.04
728254--728281	2	14.0	2	100	0	56	50	0	0	50	1.00
733496--733537	22	2.0	21	85	4	57	52	0	2	45	1.13
735202--735245	18	2.4	19	81	11	56	65	4	6	22	1.35
735270--735332	20	3.4	19	78	22	71	52	0	0	47	1.00
738182--738238	20	2.8	20	80	17	64	38	0	7	54	1.28
741702--741733	14	2.3	15	89	10	50	53	3	0	43	1.16
744581--744615	2	17.5	2	93	0	61	48	2	0	48	1.16
745420--745452	15	2.2	15	94	0	57	48	0	0	51	1.00
745804--746079	85	3.2	85	98	1	534	46	10	1	41	1.46
745804--746080	87	3.2	87	97	2	540	46	10	1	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746145--746218	30	2.4	31	84	8	107	51	4	12	32	1.58
746145--746216	31	2.3	32	86	9	105	51	4	11	33	1.57
747327--747352	1	26.0	1	100	0	52	0	0	100	0	0.00
753431--753487	24	2.4	24	87	0	78	15	19	38	26	1.92
753431--753499	24	2.9	24	78	4	77	17	17	39	26	1.91
753873--753911	15	2.6	15	95	0	69	33	33	12	20	1.91
758129--758154	2	13.0	2	100	0	52	50	0	50	0	1.00
768291--768320	2	15.0	2	100	0	60	50	0	50	0	1.00
768879--768919	19	2.2	18	86	8	55	31	0	0	68	0.90
770909--770964	18	3.1	18	76	5	58	51	0	3	44	1.18
771865--771916	19	2.8	19	77	11	63	46	0	1	51	1.12
771865--771916	18	2.8	18	79	2	59	46	0	1	51	1.12
780752--780776	2	12.5	2	100	0	50	52	0	0	48	1.00
781692--781729	5	7.8	5	91	8	53	42	0	13	44	1.43
784276--784339	21	3.2	21	89	6	98	62	0	1	35	1.05
784470--784528	16	3.6	16	72	18	50	47	0	3	49	1.18
784600--784703	28	3.5	30	69	23	78	48	0	0	50	1.14
784640--784705	28	2.3	30	84	10	93	48	0	1	50	1.10
784627--784694	35	1.9	35	82	5	84	51	0	1	47	1.09
785617--785649	2	16.5	2	100	0	66	48	0	0	51	1.00
787787--787826	4	10.0	4	100	0	80	50	25	0	25	1.50
790555--790593	14	2.6	15	84	8	53	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
790876--790912	20	1.9	20	88	5	58	35	2	0	62	1.10
792170--792195	13	2.0	13	100	0	52	53	0	0	46	1.00
794196--794237	11	3.7	11	84	6	57	26	0	0	73	0.83
794203--794237	11	3.0	12	91	8	63	22	0	0	77	0.78
794852--794900	3	16.3	3	100	0	98	32	0	0	67	0.91
795072--795127	25	2.5	22	80	11	60	48	0	1	50	1.11
795443--795484	20	2.1	20	86	8	59	47	2	0	50	1.14
795780--795814	3	11.7	3	93	0	61	28	0	2	68	1.04
796143--796184	21	2.0	21	86	9	59	57	0	0	42	0.99
796379--796427	21	2.4	22	86	10	68	24	0	8	67	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22