genome.fa.s167.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  14  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2176214--2176313	16	6.9	14	67	21	55	38	2	1	59	1.16
2179011--2179072	22	2.8	22	76	11	65	50	0	1	48	1.10
2179356--2179416	32	1.9	31	83	12	79	57	1	0	40	1.08
2180122--2180213	35	2.6	35	87	1	121	48	6	4	40	1.49
2184737--2184841	51	2.1	51	89	3	158	38	6	3	51	1.46
2199648--2199739	28	3.5	26	81	8	105	45	19	7	27	1.77
2206826--2206859	2	17.5	2	93	6	61	50	0	0	50	1.00
2207756--2207787	2	16.0	2	100	0	64	50	0	0	50	1.00
2208135--2208173	9	4.7	9	81	18	57	7	43	10	38	1.67
2208142--2208191	15	3.3	16	91	5	70	6	42	12	40	1.67
2208135--2208188	24	2.2	24	83	0	63	7	42	11	38	1.68
2209398--2209467	25	2.9	23	73	16	61	48	0	0	51	1.00
2214009--2214222	34	6.4	34	80	4	193	41	23	6	28	1.79
2219644--2219711	27	2.5	27	87	0	91	27	7	17	47	1.74
2220026--2220050	3	8.3	3	100	0	50	68	0	0	32	0.90
2220052--2220081	3	10.0	3	100	0	60	33	0	0	66	0.92
2221066--2221216	34	4.4	34	99	0	293	41	37	0	20	1.53
2221108--2221209	25	4.4	25	65	28	80	41	38	0	20	1.53
2221348--2221401	26	2.1	27	86	10	78	48	3	0	48	1.19
2221892--2221929	14	2.6	15	83	4	51	52	0	0	47	1.00
2222338--2222368	14	2.2	14	100	0	62	48	0	19	32	1.49
2223654--2223726	37	2.0	37	91	0	119	31	27	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2223656--2223741	37	2.3	37	86	4	111	34	27	15	22	1.94
2229877--2229904	2	14.0	2	100	0	56	50	0	0	50	1.00
2233923--2233966	2	22.0	2	100	0	88	50	0	0	50	1.00
2238695--2238738	19	2.2	21	88	8	65	54	2	2	40	1.25
2240386--2240456	27	2.6	28	88	6	101	45	25	5	23	1.75
2242335--2242380	21	2.1	22	84	4	58	19	30	19	30	1.97
2255400--2255517	42	2.8	42	94	0	209	35	11	22	30	1.90
2262157--2262189	17	1.9	17	88	11	50	75	0	0	24	0.80
2266826--2266879	17	3.2	17	75	14	58	61	0	0	38	0.96
2266816--2266883	36	1.9	35	85	8	93	58	0	0	41	0.98
2266874--2266916	22	1.9	23	85	4	61	34	2	2	60	1.22
2266882--2266944	30	2.1	30	82	5	74	30	3	3	63	1.25
2267658--2267698	2	20.5	2	100	0	82	51	0	0	48	1.00
2268166--2268190	4	6.2	4	100	0	50	76	0	0	24	0.80
2268328--2268373	22	2.1	22	84	8	58	58	2	0	39	1.10
2268354--2268392	16	2.3	18	82	13	55	43	2	0	53	1.14
2268412--2268446	18	1.9	18	88	11	54	42	0	2	54	1.15
2268512--2268550	17	2.2	19	90	9	64	46	0	0	53	1.00
2268519--2268576	23	2.6	23	72	8	57	44	0	0	55	0.99
2268507--2268594	28	3.2	29	75	10	71	44	0	0	55	0.99
2268530--2268594	28	2.4	28	84	5	89	46	0	0	53	1.00
2280787--2280825	15	2.5	15	87	4	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2280815--2280847	12	2.6	13	90	4	50	72	0	0	27	0.85
2281446--2281474	2	14.5	2	100	0	58	51	0	0	48	1.00
2281858--2281915	6	9.8	6	74	10	57	62	1	0	36	1.06
2281858--2281915	11	4.9	12	77	8	57	62	1	0	36	1.06
2282280--2282831	289	1.9	289	94	2	968	42	8	4	43	1.56
2283136--2283161	3	8.7	3	100	0	52	65	0	0	34	0.93
2284277--2284303	1	27.0	1	100	0	54	0	0	0	100	0.00
2284706--2284747	21	2.0	21	86	13	61	57	0	0	42	0.99
2292216--2292300	27	3.1	27	75	9	73	60	0	2	37	1.10
2308510--2308548	2	19.5	2	83	0	51	48	5	2	43	1.38
2311712--2311772	2	32.0	2	78	21	51	47	3	3	45	1.35
2313441--2313470	14	2.1	14	93	0	51	36	0	0	63	0.95
2313601--2313641	21	2.0	21	85	9	57	73	0	0	26	0.84
2325237--2325279	14	3.4	13	84	15	63	60	0	0	39	0.97
2325956--2325985	2	15.0	2	100	0	60	50	0	0	50	1.00
2326975--2327010	17	2.1	18	89	5	56	33	2	0	63	1.08
2328009--2328038	5	6.0	5	92	0	51	20	3	0	76	0.92
2328494--2328545	23	2.3	23	83	3	61	57	1	1	38	1.21
2328507--2328553	23	2.0	23	100	0	94	46	0	4	48	1.21
2329229--2329265	19	1.9	19	89	10	58	29	0	0	70	0.88
2330858--2330887	2	15.0	2	100	0	60	0	50	0	50	1.00
2330887--2330922	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2332041--2332107	35	1.9	35	93	0	116	37	8	5	47	1.59
2336219--2336256	17	2.2	18	86	9	53	21	0	2	76	0.91
2337337--2337372	18	1.9	19	88	5	56	44	8	0	47	1.33
2337620--2337673	24	2.2	24	78	12	58	53	3	5	37	1.42
2338680--2338717	18	2.0	20	90	10	62	36	0	2	60	1.11
2338690--2338729	19	2.1	18	86	9	53	42	0	0	57	0.98
2343420--2343476	23	2.5	23	73	18	57	57	0	1	40	1.09
2349160--2349197	20	1.9	20	94	0	67	57	13	13	15	1.65
2360514--2360584	20	3.5	20	75	11	58	38	1	2	57	1.22
2360602--2360685	5	17.2	5	70	20	54	35	1	0	63	1.03
2360626--2360671	12	3.7	12	83	16	58	30	0	0	69	0.89
2360611--2360685	21	3.6	21	72	16	59	36	0	0	64	0.94
2360637--2360696	26	2.2	28	82	5	70	40	0	0	60	0.97
2360875--2361080	97	2.1	99	81	6	231	44	3	7	45	1.48
2361502--2361534	16	2.1	16	94	0	57	66	0	0	33	0.92
2362823--2362854	16	2.0	16	100	0	64	18	12	0	68	1.20
2364213--2364253	19	2.1	20	86	4	57	53	0	0	46	1.00
2364441--2364486	23	2.0	23	83	8	58	50	0	0	50	1.00
2365765--2365797	15	2.1	16	88	5	50	51	0	3	45	1.16
2366077--2366105	14	2.0	15	93	6	51	55	6	0	37	1.27
2368533--2368617	26	3.2	26	66	9	64	48	0	0	51	1.00
2368596--2368635	14	2.7	15	85	14	57	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2368836--2368927	32	2.8	33	77	8	98	52	1	1	45	1.15
2368883--2368973	9	10.1	9	72	10	62	61	1	0	37	1.03
2369383--2369440	21	2.7	21	76	10	55	58	0	0	41	0.98
2370195--2370239	21	2.1	21	84	8	56	44	0	0	55	0.99
2370194--2370278	33	2.6	32	77	14	93	43	0	0	56	0.99
2370268--2370322	17	3.2	18	76	16	55	38	0	0	61	0.96
2370511--2370562	26	1.9	26	84	7	68	32	0	3	63	1.12
2370520--2370572	22	2.4	22	76	14	56	33	0	1	64	1.05
2370606--2370660	7	8.0	7	81	4	58	49	0	1	49	1.11
2370601--2370645	13	3.4	13	81	6	54	53	0	2	44	1.13
2370609--2370689	14	5.7	14	77	12	67	45	2	1	50	1.22
2370668--2370723	14	4.0	14	75	13	53	37	3	1	57	1.27
2372548--2372595	22	2.3	20	85	7	60	41	4	0	54	1.20
2372548--2372595	10	4.6	10	80	10	60	41	4	0	54	1.20
2373074--2373129	26	2.2	25	84	12	69	66	8	3	21	1.35
2376989--2377037	21	2.3	22	86	13	75	53	0	0	46	1.00
2377802--2377841	13	3.0	13	82	17	55	32	0	0	67	0.91
2378800--2378859	22	3.0	20	83	9	70	73	0	1	25	0.93
2378800--2378857	20	2.8	22	76	12	68	74	0	1	24	0.92
2381926--2381978	21	2.5	21	84	9	63	62	0	0	37	0.96
2382684--2382772	8	11.1	8	66	17	51	42	1	0	56	1.06
2382688--2382734	22	2.1	22	84	0	58	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2384091--2384141	22	2.3	22	82	0	66	56	1	3	37	1.29
2384205--2384248	20	2.2	21	80	12	56	56	2	0	40	1.11
2385988--2386022	2	17.5	2	100	0	70	51	0	0	48	1.00
2389659--2389685	2	13.5	2	100	0	54	51	0	0	48	1.00
2389917--2389977	27	2.1	30	85	8	83	32	0	3	63	1.10
2389929--2389993	21	3.1	22	80	4	64	36	0	1	61	1.05
2389931--2389992	29	2.1	29	82	5	72	38	0	1	59	1.07
2390553--2390584	15	2.1	15	94	0	55	34	15	0	50	1.45
2396274--2396305	3	10.7	3	100	0	64	34	0	31	34	1.58
2407171--2407287	5	24.0	5	66	17	59	41	1	0	56	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22