genome.fa.s167.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  16  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2594706--2594757	25	2.0	26	88	3	79	42	0	0	57	0.98
2595482--2595923	232	1.9	225	80	6	505	35	8	12	43	1.73
2597156--2597207	11	3.9	13	75	22	54	48	0	0	51	1.00
2597187--2597229	22	2.0	22	90	9	70	37	0	0	62	0.95
2602581--2602635	17	3.3	16	72	7	56	38	1	5	54	1.34
2603643--2603679	2	18.5	2	100	0	74	48	0	0	51	1.00
2604125--2604174	24	2.0	26	84	7	68	46	0	4	50	1.20
2605828--2605858	12	2.5	13	94	5	55	48	12	0	38	1.42
2612288--2612313	2	13.0	2	100	0	52	50	0	0	50	1.00
2612848--2612901	25	2.2	25	83	6	65	46	0	0	53	1.00
2613564--2613617	16	3.4	16	82	10	74	42	0	0	57	0.98
2614189--2614235	24	2.0	24	87	8	69	44	0	4	51	1.21
2616223--2616279	16	3.6	16	71	15	55	52	0	1	45	1.11
2618838--2618870	2	16.5	2	100	0	66	51	48	0	0	1.00
2618870--2618912	2	21.5	2	100	0	86	51	0	0	48	1.00
2619205--2619241	18	2.0	20	89	10	60	40	0	0	59	0.97
2619179--2619267	32	2.9	33	67	23	77	46	0	0	53	1.00
2619515--2619548	2	17.0	2	93	0	59	52	0	0	47	1.00
2620749--2620810	31	1.9	32	83	9	81	38	3	0	58	1.15
2620976--2621013	3	12.3	3	88	5	58	60	0	5	34	1.19
2621060--2621121	31	2.0	31	96	0	115	19	17	12	50	1.78
2623873--2623938	24	2.9	22	80	13	71	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2624331--2624359	2	14.5	2	100	0	58	48	0	0	51	1.00
2624552--2624587	3	11.7	3	94	5	63	66	0	0	33	0.92
2625115--2625141	14	1.9	14	100	0	54	70	0	0	29	0.88
2625772--2625812	21	2.0	21	95	0	73	24	19	9	46	1.80
2626252--2626276	2	12.5	2	100	0	50	48	0	0	52	1.00
2626728--2626782	22	2.5	21	82	11	65	60	0	1	38	1.08
2629049--2629101	25	2.1	25	96	0	97	45	5	7	41	1.56
2634263--2634297	3	11.7	3	100	0	70	34	0	0	65	0.93
2634802--2634836	13	2.8	13	91	4	54	65	0	0	34	0.93
2634873--2634908	18	2.1	17	89	5	54	25	0	0	75	0.81
2635153--2635242	35	2.4	38	79	18	100	43	0	1	55	1.07
2635215--2635277	32	2.0	32	84	6	83	42	1	3	52	1.27
2645787--2645828	21	2.0	21	81	9	50	57	0	2	40	1.12
2647049--2647118	21	3.3	21	65	31	58	45	11	0	42	1.40
2647032--2647125	43	2.2	43	96	0	170	46	9	0	43	1.36
2647032--2647144	43	2.7	43	88	2	149	47	7	0	43	1.38
2647200--2647254	2	27.5	2	92	0	92	50	3	0	45	1.19
2648384--2648425	21	2.0	21	90	0	66	40	21	11	26	1.88
2651970--2652011	3	14.0	3	89	0	66	4	0	28	66	1.12
2653119--2653171	20	2.6	21	82	8	65	39	0	0	60	0.97
2653094--2653151	18	3.3	16	73	17	53	32	0	0	67	0.91
2653276--2653310	2	17.5	2	88	11	54	48	2	0	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2654462--2654568	30	3.7	30	73	15	82	53	2	5	38	1.39
2655216--2655305	42	2.1	43	82	15	109	48	0	0	51	1.00
2657591--2657617	2	13.5	2	100	0	54	51	0	0	48	1.00
2657617--2657650	2	17.0	2	100	0	68	50	0	50	0	1.00
2663799--2663826	6	4.7	6	100	0	56	67	0	0	32	0.91
2664185--2664227	22	2.0	22	100	0	86	41	6	13	37	1.72
2664678--2664723	3	15.3	3	91	8	76	2	30	0	67	1.03
2665340--2665381	11	3.8	11	81	12	59	33	0	0	66	0.92
2665371--2665401	15	2.0	16	93	6	55	45	3	0	51	1.17
2665370--2665408	15	2.6	14	84	11	51	48	2	0	48	1.15
2667395--2667440	21	2.2	21	84	3	58	36	15	10	36	1.82
2667816--2667872	26	2.1	27	84	9	73	54	3	0	42	1.17
2668036--2668069	16	2.1	16	88	0	50	47	11	0	41	1.40
2669744--2669776	7	4.7	7	96	0	57	42	3	15	39	1.62
2673011--2673052	19	2.2	19	91	8	68	52	0	2	45	1.13
2673021--2673060	19	2.1	19	90	4	62	57	0	0	42	0.98
2673992--2674019	10	2.8	10	100	0	56	82	0	0	17	0.68
2676199--2676231	16	2.1	16	94	0	57	45	6	15	33	1.70
2677953--2678060	32	3.5	31	82	6	137	41	5	3	49	1.44
2678945--2679002	26	2.2	26	84	6	73	55	1	0	43	1.10
2678926--2679016	30	3.0	31	76	15	93	52	1	1	45	1.15
2684044--2684092	24	2.0	24	88	7	73	57	2	6	34	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2687340--2687411	27	2.7	27	84	2	83	56	9	2	30	1.46
2687351--2687411	27	2.3	27	88	0	86	60	8	1	29	1.35
2687697--2687723	2	13.5	2	100	0	54	51	0	0	48	1.00
2688804--2688876	26	2.7	28	79	12	91	53	0	1	45	1.09
2688831--2688884	19	2.8	20	75	25	53	48	0	1	50	1.11
2688960--2689066	11	9.4	11	67	27	55	42	3	1	51	1.30
2689499--2689534	14	2.6	13	87	12	54	75	0	5	19	1.00
2689635--2689739	52	2.0	52	88	0	156	38	9	15	37	1.80
2694930--2694956	2	13.5	2	100	0	54	51	0	0	48	1.00
2695266--2695358	11	8.5	11	74	23	81	35	0	0	64	0.94
2695254--2695365	22	5.0	22	74	20	72	37	0	0	62	0.95
2695311--2695349	16	2.4	16	86	4	51	35	0	0	64	0.94
2695259--2695365	6	16.4	7	69	29	69	37	0	0	62	0.95
2695334--2695403	17	4.0	17	73	12	52	54	1	1	42	1.18
2697694--2697729	2	18.0	2	88	0	54	44	0	0	55	0.99
2701954--2701983	2	15.5	2	93	6	53	53	0	0	46	1.00
2702699--2702787	21	4.7	20	69	18	66	57	1	0	41	1.06
2702700--2702778	27	2.9	27	71	14	72	58	1	0	40	1.06
2702772--2702798	11	2.5	11	100	0	54	48	0	0	51	1.00
2702760--2702827	29	2.3	30	80	12	79	54	1	0	44	1.09
2703362--2703421	30	2.0	30	87	12	88	51	0	0	48	1.00
2703320--2703441	37	3.3	36	76	15	90	50	0	2	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2703848--2703911	21	3.2	20	72	20	53	48	0	1	50	1.10
2703883--2703944	28	2.2	29	82	8	74	54	0	0	45	0.99
2704348--2704425	13	5.6	13	77	14	75	51	0	0	48	1.00
2704357--2704416	29	2.0	29	87	6	84	48	0	0	51	1.00
2704357--2704415	16	3.8	16	73	11	50	47	0	0	52	1.00
2704671--2704725	12	4.8	12	80	14	71	32	1	0	65	1.03
2711839--2711883	12	3.8	12	82	8	56	31	0	2	66	1.04
2714632--2714669	10	3.7	10	86	13	51	81	0	0	18	0.69
2714631--2714668	9	4.2	9	87	9	51	81	0	0	18	0.69
2716843--2716870	2	14.0	2	100	0	56	50	0	0	50	1.00
2717662--2717691	14	2.2	13	94	5	51	40	0	0	60	0.97
2717659--2717694	18	2.1	16	90	10	54	41	0	0	58	0.98
2718244--2718303	32	1.9	31	89	3	93	53	1	0	45	1.10
2718250--2718302	16	3.4	15	75	17	54	54	1	0	43	1.11
2718262--2718312	16	3.3	15	74	17	50	58	1	0	39	1.09
2718258--2718344	18	5.4	18	66	27	61	58	1	0	40	1.05
2718909--2718954	24	1.9	24	86	8	67	50	0	2	47	1.13
2719867--2719900	14	2.5	13	90	4	50	55	0	0	44	0.99
2720167--2720249	17	4.5	19	83	8	93	38	0	1	60	1.05
2720200--2720247	12	4.1	12	75	5	53	33	0	2	64	1.05
2720502--2720581	18	4.4	19	72	18	64	60	0	0	40	0.97
2720515--2720610	8	11.9	8	71	17	65	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2720509--2720610	23	4.5	23	67	12	68	57	0	0	42	0.98
2720525--2720610	23	3.5	24	78	10	77	55	0	0	44	0.99
2720510--2720609	10	10.3	10	67	23	54	58	0	0	42	0.98
2729103--2729127	12	2.1	12	100	0	50	32	0	8	60	1.26
2732041--2732076	2	18.0	2	94	0	63	50	2	0	47	1.15
2732837--2732869	2	16.5	2	100	0	66	51	0	0	48	1.00
2733646--2733699	12	4.5	12	79	4	56	48	1	0	50	1.11
2734750--2734785	12	2.8	14	80	20	51	38	0	0	61	0.96
2734809--2734849	20	2.1	20	86	4	57	51	0	0	48	1.00
2735431--2735509	40	2.0	40	89	0	122	31	22	11	34	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22