genome.fa.s167.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  22  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3983765--3983808	6	7.0	6	90	10	70	18	0	50	31	1.47
3984064--3984112	10	4.9	10	85	7	55	65	0	24	10	1.23
3984064--3984116	15	3.5	15	82	7	63	66	0	24	9	1.21
3984581--3984616	2	18.0	2	88	0	54	50	5	0	44	1.25
3989825--3989865	21	2.0	21	100	0	82	39	14	0	46	1.45
3990005--3990076	35	2.1	35	84	5	92	40	4	0	55	1.19
3991593--3991632	18	2.2	19	90	4	64	77	2	0	20	0.88
3991713--3991762	17	2.9	17	90	0	73	52	0	0	48	1.00
3991756--3991819	19	3.4	18	74	23	53	64	1	3	31	1.19
3991843--3991893	26	2.0	26	84	3	68	41	1	0	56	1.10
3992539--3992578	8	5.0	8	90	0	62	37	0	12	50	1.41
3992537--3992578	12	3.5	12	86	0	57	38	0	11	50	1.40
3995408--3995445	2	19.5	2	83	5	51	52	0	2	44	1.14
3998890--3998916	6	4.5	6	100	0	54	85	0	14	0	0.61
3999756--3999796	2	21.0	2	90	5	66	48	2	0	48	1.14
4002922--4002962	20	2.0	20	100	0	82	29	4	17	48	1.67
4005247--4005373	4	31.8	4	85	0	155	46	4	3	44	1.42
4005247--4005374	14	9.6	14	77	6	115	46	5	3	44	1.45
4008669--4008696	2	14.0	2	100	0	56	50	0	0	50	1.00
4012087--4012129	3	14.3	3	100	0	86	67	0	0	32	0.91
4027839--4027863	2	12.5	2	100	0	50	0	48	0	52	1.00
4028448--4028478	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4038255--4039109	286	2.9	290	90	4	1330	40	19	15	25	1.90
4041856--4041889	3	11.3	3	87	0	50	0	35	2	61	1.11
4046614--4046641	2	14.0	2	100	0	56	50	0	0	50	1.00
4048024--4048048	6	4.2	6	100	0	50	32	16	36	16	1.90
4053232--4053261	3	10.0	3	100	0	60	66	0	0	33	0.92
4053739--4053776	2	19.5	2	94	5	69	0	0	50	50	1.00
4056874--4056899	3	8.7	3	100	0	52	65	0	0	34	0.93
4059431--4059496	6	11.3	6	76	20	61	48	0	0	51	1.00
4059432--4059499	21	3.0	21	80	15	91	50	0	0	50	1.00
4059438--4059497	15	4.0	14	76	20	59	50	0	0	50	1.00
4059677--4059712	3	12.0	3	93	0	63	66	2	0	30	1.06
4072089--4072117	2	14.5	2	100	0	58	51	0	48	0	1.00
4075627--4075656	15	2.0	15	100	0	60	66	33	0	0	0.92
4075626--4075656	16	1.9	16	93	0	53	64	35	0	0	0.94
4078084--4078119	2	18.0	2	94	0	54	55	0	0	44	0.99
4078300--4078338	3	13.0	3	100	0	78	33	0	0	66	0.92
4079270--4079302	2	16.5	2	100	0	66	48	0	0	51	1.00
4080709--4080735	2	13.5	2	100	0	54	0	48	0	51	1.00
4084785--4084831	13	3.4	13	81	16	58	61	2	0	36	1.08
4084774--4084843	29	2.4	30	85	7	99	51	1	0	47	1.09
4084775--4084823	16	3.3	15	78	18	57	55	0	0	44	0.99
4085097--4085141	22	2.2	20	84	8	54	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4085188--4085230	13	3.2	13	77	6	50	41	0	6	51	1.29
4085224--4085281	24	2.4	23	80	8	80	39	3	6	50	1.46
4085247--4085309	31	2.0	31	84	0	81	39	3	11	46	1.55
4085367--4085401	17	2.1	17	94	0	61	45	0	0	54	0.99
4085470--4085556	39	2.3	39	84	6	106	51	6	3	37	1.46
4085638--4085684	20	2.5	18	75	18	51	51	6	0	42	1.27
4085677--4085727	27	2.0	25	88	7	75	60	15	0	23	1.35
4085826--4085863	19	2.0	19	89	0	58	34	13	13	39	1.83
4085981--4086032	13	3.8	13	74	16	52	46	0	3	50	1.20
4086772--4086912	34	4.1	34	80	3	158	44	24	5	24	1.75
4086764--4086913	68	2.2	68	83	2	194	46	25	5	23	1.73
4090995--4091048	19	2.8	19	82	0	72	35	14	18	31	1.91
4091345--4091588	34	7.2	34	82	4	296	44	25	5	25	1.74
4091352--4091588	68	3.5	68	91	2	370	44	25	5	24	1.75
4095798--4095824	3	9.0	3	100	0	54	33	0	0	66	0.92
4099974--4100019	1	46.0	1	82	0	56	91	8	0	0	0.43
4099974--4100019	15	3.1	15	84	15	69	91	8	0	0	0.43
4099974--4100019	18	2.6	17	90	6	74	91	8	0	0	0.43
4099981--4100019	13	2.9	13	96	3	69	92	7	0	0	0.39
4100629--4100660	2	16.0	2	100	0	64	50	0	50	0	1.00
4102512--4102541	4	7.5	4	100	0	60	73	0	26	0	0.84
4102932--4102965	3	11.3	3	100	0	68	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4105926--4105959	6	5.7	6	96	0	50	0	26	32	41	1.56
4105926--4105962	12	3.1	12	88	0	56	0	24	32	43	1.55
4105962--4106002	6	6.8	6	91	0	55	12	29	2	56	1.49
4108877--4108916	2	20.0	2	100	0	80	50	0	50	0	1.00
4112206--4112260	24	2.5	22	77	16	60	52	0	0	47	1.00
4113497--4113530	12	2.8	12	83	16	52	23	0	0	76	0.79
4116232--4116301	38	1.9	35	82	8	86	40	7	7	45	1.59
4119059--4119147	29	3.1	29	95	0	151	39	16	19	24	1.92
4119175--4119209	17	2.0	18	94	5	63	31	0	0	68	0.90
4122189--4122235	15	3.1	15	80	17	53	42	0	4	53	1.20
4132092--4132117	2	13.0	2	100	0	52	0	50	0	50	1.00
4134103--4134157	29	1.9	28	88	3	83	52	5	7	34	1.52
4134204--4134241	20	1.9	19	89	5	58	26	0	2	71	1.00
4139431--4139464	17	1.9	18	88	5	52	64	2	5	26	1.30
4141627--4141656	15	1.9	16	93	6	53	30	0	0	70	0.88
4142467--4142777	103	3.1	102	89	3	484	35	23	19	21	1.96
4146005--4146158	76	2.0	76	100	0	308	33	18	9	38	1.82
4162747--4163048	160	1.9	160	90	1	480	25	12	28	33	1.93
4165686--4165715	15	2.0	15	93	0	51	36	53	3	6	1.44
4165661--4165753	40	2.3	40	94	0	168	36	45	1	17	1.56
4169414--4169465	2	26.5	2	92	3	88	0	51	0	48	1.00
4171832--4171858	6	4.5	6	100	0	54	48	37	0	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4176366--4176538	93	1.9	94	79	7	201	42	4	8	45	1.54
4181003--4181189	21	9.2	20	67	16	73	42	1	13	42	1.51
4181013--4181129	7	16.3	7	73	15	87	41	1	12	43	1.53
4181018--4181117	22	4.6	22	78	14	100	41	2	13	44	1.54
4181112--4181189	20	3.8	21	75	10	72	44	0	11	43	1.40
4181513--4181579	7	10.0	7	75	15	52	40	0	16	43	1.48
4181500--4181552	27	1.9	28	84	3	72	37	1	16	43	1.60
4182113--4182154	15	2.7	15	85	10	50	35	7	11	45	1.69
4183873--4184401	158	3.4	154	77	5	474	42	17	10	29	1.82
4186291--4186343	21	2.5	22	81	9	74	18	5	32	43	1.74
4186353--4186426	21	3.5	21	81	0	85	29	0	21	48	1.50
4186374--4186426	14	3.8	13	77	5	52	33	0	18	47	1.49
4186420--4186458	20	2.0	20	89	0	60	23	2	35	38	1.68
4186602--4186646	14	3.3	14	84	6	56	28	2	37	31	1.69
4186610--4186646	7	5.4	7	90	6	58	29	0	37	32	1.58
4186591--4186646	27	2.1	27	82	0	67	30	1	33	33	1.68
4186610--4186646	13	2.8	13	87	4	56	29	0	37	32	1.58
4190567--4190654	22	3.9	22	79	5	88	77	7	12	2	1.08
4190580--4190654	34	2.2	33	81	11	82	77	8	12	2	1.08
4190955--4191007	17	3.2	16	81	10	63	39	7	9	43	1.65
4190972--4191001	15	2.1	14	93	6	51	43	6	6	43	1.57
4191851--4191890	21	2.0	21	85	5	55	57	7	5	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4193405--4193459	16	3.4	16	75	9	58	49	30	14	5	1.66
4198539--4198593	28	2.0	28	92	0	92	18	16	7	58	1.60
4199084--4199116	2	16.5	2	100	0	66	0	48	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22

The End!