genome.fa.s167.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Length:  4199719

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  8  of  22  ( 2633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043858--1043932	29	2.6	29	80	6	80	57	1	1	40	1.16
1043876--1043934	28	2.1	29	81	9	68	61	1	0	37	1.07
1044025--1044074	18	2.8	18	79	11	66	38	0	0	62	0.96
1043998--1044081	36	2.4	37	83	13	99	36	1	1	60	1.12
1044058--1044091	15	2.2	16	89	5	52	44	0	0	55	0.99
1044071--1044126	27	2.0	28	83	10	71	55	0	0	44	0.99
1044110--1044150	15	2.6	16	84	7	57	56	4	0	39	1.21
1044444--1044476	12	2.8	12	86	4	50	72	0	0	27	0.85
1044650--1044691	20	2.1	20	91	8	68	50	0	0	50	1.00
1044680--1044743	14	4.3	15	77	18	55	32	3	1	62	1.20
1044715--1044770	17	3.4	17	79	20	57	32	3	3	60	1.31
1045136--1045176	12	3.8	11	78	15	50	73	2	2	21	1.07
1045347--1045410	25	2.7	23	75	18	60	60	1	4	32	1.26
1045609--1045643	10	3.4	10	84	7	52	74	2	0	22	0.95
1045785--1045821	19	1.9	19	88	0	56	70	2	0	27	1.01
1045765--1045822	25	2.3	25	82	5	64	68	3	0	27	1.05
1045793--1045856	18	3.5	19	77	14	71	57	3	0	39	1.14
1045859--1045900	22	1.9	21	85	9	57	69	2	0	28	1.01
1045977--1046039	4	15.8	4	76	18	51	0	20	0	79	0.73
1045981--1046040	12	4.5	13	74	17	61	0	20	0	80	0.72
1045981--1046039	26	2.2	25	88	8	82	0	20	0	79	0.73
1045977--1046047	32	2.3	30	81	15	83	0	22	0	77	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045978--1046048	17	4.4	16	70	16	56	0	23	0	76	0.79
1046294--1046352	19	2.9	20	77	18	59	57	8	1	32	1.39
1046302--1046338	14	2.4	16	82	8	51	59	5	2	32	1.34
1050378--1050418	21	2.0	21	100	0	82	24	9	31	34	1.88
1051121--1051254	69	1.9	70	90	3	216	33	9	21	35	1.86
1054443--1054490	24	2.0	24	88	8	71	45	0	0	54	0.99
1054421--1054506	40	2.2	39	81	8	95	45	0	0	54	0.99
1055523--1055557	18	1.9	18	100	0	70	60	0	0	40	0.97
1055523--1055562	18	2.1	20	90	9	66	55	0	0	45	0.99
1057567--1057598	2	16.0	2	100	0	64	0	50	0	50	1.00
1058238--1058305	37	1.9	37	85	14	99	48	0	0	51	1.00
1058238--1058281	17	2.6	17	77	0	52	47	0	0	52	1.00
1058238--1058308	34	2.1	33	84	10	90	49	0	0	50	1.00
1060329--1060356	2	14.0	2	100	0	56	50	0	0	50	1.00
1060734--1060802	34	2.0	34	83	8	86	31	2	2	62	1.25
1062614--1062656	20	2.2	20	82	0	50	30	9	4	55	1.52
1062640--1062671	13	2.3	15	89	10	50	37	0	0	62	0.95
1064109--1064148	20	2.0	21	85	9	57	37	0	0	62	0.95
1065673--1065741	26	2.6	27	77	13	72	55	0	0	44	0.99
1065725--1065750	12	2.2	12	100	0	52	61	0	0	38	0.96
1066115--1066158	23	2.0	22	86	4	61	56	0	0	43	0.99
1066717--1066760	15	2.8	16	83	13	56	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070173--1070263	25	3.6	25	71	15	78	47	0	1	51	1.07
1071770--1071798	2	14.5	2	100	0	58	51	0	48	0	1.00
1078456--1078499	20	2.3	18	85	11	61	40	0	0	59	0.98
1078465--1078501	18	2.2	16	90	9	56	40	0	0	59	0.97
1078327--1078669	172	1.9	177	89	5	534	42	6	11	39	1.68
1078630--1078674	20	2.3	20	92	3	74	42	0	0	57	0.98
1078878--1078913	17	2.2	17	90	9	58	30	0	2	66	1.06
1079549--1079626	36	2.2	36	81	4	95	52	6	2	38	1.41
1080304--1080366	4	16.2	4	75	15	53	76	1	22	0	0.88
1080304--1080363	15	4.0	14	78	18	59	76	1	21	0	0.87
1080395--1080472	38	2.1	38	83	11	99	39	2	1	56	1.21
1080641--1080667	12	2.2	12	100	0	54	25	0	0	74	0.83
1080767--1080814	16	2.9	17	78	12	55	79	0	18	2	0.84
1080948--1081007	12	4.8	12	76	14	50	31	1	1	65	1.13
1080947--1080998	23	2.3	22	83	9	68	30	1	1	65	1.14
1081908--1081948	17	2.6	17	81	11	52	46	0	0	53	1.00
1082118--1082152	8	4.2	8	85	7	52	65	0	0	34	0.93
1082118--1082160	18	2.4	18	84	3	61	67	0	0	32	0.91
1082116--1082171	17	3.2	17	80	5	67	60	0	0	39	0.97
1082517--1082592	39	1.9	40	81	7	93	40	6	5	47	1.52
1083269--1083300	2	16.0	2	100	0	64	0	0	50	50	1.00
1088765--1088820	30	1.9	30	85	7	80	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089491--1089562	28	2.7	28	75	23	75	61	0	4	34	1.16
1089570--1089633	33	1.9	33	84	6	85	50	0	0	50	1.00
1089543--1089639	41	2.4	40	83	14	137	51	0	1	47	1.07
1089849--1089895	2	24.0	2	86	4	60	57	0	0	42	0.98
1089857--1089928	26	2.8	25	85	6	81	61	0	0	38	0.96
1089861--1089923	23	2.8	23	80	15	69	61	0	0	38	0.96
1092065--1092101	11	3.2	12	81	14	51	37	0	0	62	0.96
1093172--1093206	3	11.7	3	87	0	52	65	0	34	0	0.93
1094763--1094799	12	3.1	12	88	0	56	43	0	8	48	1.32
1095917--1095969	3	18.0	3	88	3	81	30	0	3	66	1.10
1096419--1096494	6	12.7	6	68	15	50	40	0	1	57	1.07
1096407--1096494	22	4.0	22	69	16	65	43	0	1	55	1.07
1100721--1100750	15	1.9	16	93	6	53	56	0	0	43	0.99
1100833--1100859	14	1.9	14	100	0	54	51	0	0	48	1.00
1101172--1101213	21	2.0	22	90	4	68	57	0	0	42	0.99
1101193--1101264	15	5.1	15	71	17	57	55	1	0	43	1.08
1101193--1101262	13	4.9	15	73	16	69	55	1	0	42	1.08
1101172--1101288	27	4.5	25	76	13	94	57	1	0	41	1.09
1102326--1102360	18	1.9	19	88	11	56	42	0	0	57	0.99
1102318--1102361	23	2.0	23	86	4	63	40	0	2	56	1.11
1102300--1102363	30	2.1	30	85	5	85	39	0	1	59	1.07
1102404--1102463	29	2.1	29	90	3	95	53	1	3	41	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103069--1103100	6	4.9	7	92	7	50	40	0	0	59	0.97
1103069--1103107	19	2.1	19	85	0	51	43	0	0	56	0.99
1103645--1103682	10	3.7	10	86	6	58	60	0	0	39	0.97
1103640--1103727	37	2.4	38	81	9	101	55	0	0	44	0.99
1104027--1104071	22	2.0	22	83	8	56	68	0	6	24	1.13
1104430--1104493	10	6.5	10	73	21	55	70	0	0	29	0.88
1104429--1104487	19	3.2	19	72	20	61	72	0	0	27	0.84
1104425--1104514	37	2.4	36	80	10	110	66	0	0	33	0.92
1104429--1104483	26	2.1	27	77	16	53	72	0	0	27	0.85
1104440--1104512	27	2.7	28	81	14	82	67	0	0	32	0.91
1104430--1104515	11	7.9	11	70	26	51	67	0	0	32	0.91
1104806--1104891	17	4.8	17	73	18	68	60	0	3	36	1.14
1104806--1104864	20	3.1	20	73	23	56	61	0	1	37	1.07
1104882--1104931	10	4.6	11	71	14	50	60	0	0	40	0.97
1104820--1104940	22	5.5	22	69	18	65	60	0	1	38	1.07
1105829--1105877	24	2.0	24	84	8	62	48	2	0	48	1.12
1105818--1105893	32	2.4	32	85	10	104	44	1	0	53	1.08
1105766--1105898	11	11.5	11	66	21	58	41	0	1	56	1.14
1105764--1105918	19	8.5	19	65	24	52	41	0	1	56	1.12
1105845--1105891	25	1.9	24	91	4	76	44	2	0	53	1.12
1105880--1105919	19	2.1	19	85	0	53	32	0	0	67	0.91
1105881--1105929	26	2.0	24	84	8	62	34	0	2	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1106460--1106495	19	1.9	18	88	5	54	58	0	2	38	1.13
1106667--1106699	16	2.0	17	88	5	50	27	0	0	72	0.85
1113926--1113955	2	15.0	2	100	0	60	50	0	0	50	1.00
1114328--1114365	13	2.7	15	80	16	53	52	0	2	44	1.14
1115912--1115983	31	2.3	34	81	13	91	48	0	0	51	1.00
1117453--1117498	22	2.0	24	87	8	69	67	0	2	30	1.03
1123113--1123138	2	13.0	2	100	0	52	50	50	0	0	1.00
1124354--1124620	132	2.0	132	92	0	444	28	26	13	30	1.94
1125639--1125700	34	1.9	31	96	0	88	25	20	19	33	1.96
1129651--1129683	12	2.7	13	86	13	52	63	30	6	0	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22