genome.fa.s194.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  10  of  24  ( 2800 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1592661--1593223	265	2.1	268	86	3	787	27	19	27	26	1.99
1594529--1594595	33	2.0	33	88	0	98	34	11	13	40	1.81
1594549--1594573	13	1.9	13	100	0	50	36	16	16	32	1.90
1594638--1594662	13	1.9	13	100	0	50	32	16	16	36	1.90
1594671--1594841	52	3.3	52	98	0	324	35	18	17	29	1.94
1600388--1600544	52	3.0	52	87	3	228	29	14	20	35	1.92
1600581--1600678	19	5.8	18	68	28	72	37	17	11	33	1.85
1600576--1600676	32	3.1	32	92	1	166	36	17	10	34	1.85
1600600--1600656	13	3.9	13	76	24	60	35	17	14	33	1.90
1601633--1602461	43	18.1	43	77	12	758	29	17	26	26	1.98
1601587--1602483	92	9.7	92	92	1	1398	29	17	26	26	1.98
1601523--1602483	185	5.1	185	93	1	1494	30	17	26	25	1.97
1602503--1602639	32	4.2	33	91	4	226	19	18	35	27	1.95
1602646--1603375	168	4.4	164	82	9	652	32	13	33	19	1.91
1602646--1603367	131	5.4	131	84	7	750	32	13	33	19	1.92
1602646--1603368	299	2.4	299	89	4	1097	32	13	33	19	1.92
1603473--1603518	8	5.6	8	89	5	56	26	6	26	41	1.80
1604666--1604694	12	2.3	13	94	5	51	6	10	10	72	1.28
1611556--1611704	52	2.9	52	87	0	208	30	14	18	36	1.91
1611693--1611717	13	1.9	13	100	0	50	36	16	16	32	1.90
1611762--1611819	19	3.4	18	68	26	54	36	17	13	32	1.89
1611756--1611852	32	3.0	33	87	4	135	36	17	12	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1611755--1611864	32	3.4	32	83	3	96	37	17	11	33	1.86
1612676--1612734	27	2.2	26	87	3	82	0	1	13	84	0.69
1612687--1612736	10	5.3	9	84	15	66	0	0	14	86	0.58
1612687--1612736	18	2.6	19	87	9	75	0	0	14	86	0.58
1612676--1612724	8	5.8	8	83	9	53	0	2	12	85	0.68
1612676--1612736	28	2.2	27	85	2	77	0	1	13	85	0.68
1625237--1625293	13	3.9	13	76	24	60	35	14	17	33	1.90
1625250--1625312	19	3.7	18	76	24	73	33	12	17	36	1.88
1625236--1625320	32	2.7	32	98	0	161	32	12	17	36	1.88
1625343--1625406	21	3.1	20	80	14	53	28	15	15	40	1.88
1625398--1625526	52	2.5	52	92	0	222	33	17	19	29	1.95
1627323--1627528	78	2.6	78	84	2	252	30	15	28	25	1.96
1627480--1627555	27	2.8	27	85	2	98	25	21	30	23	1.99
1627539--1627661	51	2.3	53	86	6	162	32	11	23	32	1.90
1632711--1633043	79	4.2	77	79	7	303	30	13	26	29	1.94
1633144--1633282	51	2.7	51	78	4	138	33	11	23	32	1.90
1635626--1635679	20	2.7	20	88	0	72	44	11	14	29	1.80
1635577--1635729	70	2.2	70	89	3	229	41	13	16	28	1.86
1636906--1637259	28	12.9	28	74	12	180	46	6	8	38	1.59
1636966--1637061	27	3.5	28	81	7	126	45	9	9	35	1.69
1636972--1637259	56	5.2	56	75	13	222	46	5	8	39	1.57
1636979--1637245	111	2.4	111	78	11	269	47	5	8	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1636966--1637282	28	11.5	27	75	9	194	46	5	8	39	1.59
1638979--1639004	13	2.0	13	100	0	52	38	15	15	30	1.88
1638958--1639024	33	2.1	32	88	8	100	32	14	17	34	1.91
1639093--1639117	13	1.9	13	100	0	50	36	16	16	32	1.90
1639710--1639758	24	2.0	24	100	0	98	46	20	0	32	1.51
1647776--1647827	20	2.7	20	91	8	81	28	15	17	38	1.90
1647897--1647922	13	2.0	13	100	0	52	38	15	15	30	1.88
1651374--1651426	17	3.0	17	84	13	63	41	0	7	50	1.30
1651380--1651430	17	2.8	18	85	5	68	41	0	7	50	1.31
1653177--1653218	22	1.9	22	95	0	75	45	14	9	30	1.77
1653863--1653898	2	17.5	2	94	5	63	47	0	2	50	1.15
1659033--1659227	84	2.3	84	77	5	187	41	9	17	31	1.81
1659174--1659231	28	2.1	28	83	0	71	43	10	13	32	1.78
1663474--1663530	21	2.8	20	86	7	78	31	17	21	29	1.96
1664382--1664415	16	2.1	16	100	0	68	29	20	20	29	1.98
1671784--1671847	33	2.0	32	87	3	92	26	14	20	39	1.90
1674431--1674482	20	2.7	20	81	3	61	26	9	23	40	1.85
1676551--1676602	20	2.4	21	81	12	61	3	23	50	23	1.66
1676863--1676904	22	2.0	21	86	13	61	40	0	21	38	1.53
1677052--1677093	20	2.1	20	100	0	84	35	14	23	26	1.93
1677283--1677309	8	3.4	8	100	0	54	59	25	0	14	1.36
1683215--1683266	20	2.7	20	90	3	79	28	11	21	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1685908--1685933	13	2.0	13	100	0	52	38	15	15	30	1.88
1688149--1688193	21	2.1	21	84	8	56	53	4	20	22	1.63
1689449--1689486	13	2.9	13	100	0	76	31	15	15	36	1.90
1689607--1689652	21	2.2	20	81	11	58	32	19	4	43	1.71
1692040--1692065	13	2.0	13	100	0	52	38	15	15	30	1.88
1694810--1694835	13	2.0	13	100	0	52	30	15	15	38	1.88
1694935--1694959	13	1.9	13	100	0	50	36	16	16	32	1.90
1696911--1696962	20	2.6	20	100	0	104	23	11	23	42	1.86
1697018--1697069	20	2.6	20	87	0	86	36	19	15	28	1.92
1700933--1700985	13	4.5	13	69	26	55	35	16	13	33	1.88
1700936--1701000	33	2.0	33	90	6	105	33	18	13	33	1.90
1701030--1701082	19	2.7	19	85	2	70	37	18	15	28	1.91
1701030--1701078	20	2.5	20	86	3	64	36	18	16	28	1.92
1702331--1702363	11	2.8	12	86	9	50	54	3	9	33	1.47
1704938--1705028	31	2.9	31	80	0	110	15	21	29	32	1.94
1704886--1705163	143	1.9	143	82	0	349	23	20	24	32	1.98
1705074--1705208	62	2.2	62	83	0	162	19	21	28	30	1.97
1705162--1705246	31	2.7	31	85	3	100	14	23	34	28	1.93
1705343--1705512	62	2.7	62	80	8	177	13	21	32	32	1.92
1705368--1705512	31	4.7	30	74	6	112	13	22	31	32	1.93
1712015--1712896	438	2.0	438	96	0	1620	25	24	18	32	1.97
1721830--1721858	13	2.2	13	100	0	58	27	13	17	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1724356--1724382	13	2.1	13	100	0	54	29	14	14	40	1.86
1724366--1724422	19	2.9	19	89	2	87	31	17	17	33	1.93
1724472--1724520	13	4.2	13	73	24	54	32	10	18	38	1.84
1727209--1727374	83	2.0	83	98	0	323	41	8	15	34	1.77
1727222--1727350	41	3.1	41	63	22	106	42	7	13	36	1.73
1729732--1729785	19	2.8	20	80	5	65	35	16	12	35	1.87
1729773--1729797	13	1.9	13	100	0	50	32	16	16	36	1.90
1729756--1729818	33	1.9	32	87	9	92	39	15	14	30	1.87
1735572--1735707	51	2.6	52	84	1	184	29	14	13	41	1.85
1741730--1741781	20	2.7	20	90	3	79	38	21	13	26	1.90
1747848--1747944	47	2.0	50	84	9	130	37	17	17	27	1.92
1749758--1749802	22	2.1	22	88	8	67	37	0	28	33	1.58
1750431--1750483	21	2.6	21	84	3	72	39	15	15	30	1.87
1752812--1752861	27	2.0	25	88	11	75	32	16	28	24	1.96
1757124--1757162	21	1.9	21	89	5	62	46	12	17	23	1.83
1758092--1758169	40	2.0	40	86	0	111	39	10	12	37	1.78
1758212--1758265	20	2.7	20	82	8	65	33	18	9	38	1.83
1758192--1758265	20	3.6	20	80	7	60	32	18	10	37	1.86
1758618--1758741	51	2.4	52	83	4	171	43	13	16	26	1.85
1758724--1758782	29	2.0	29	96	0	109	45	10	8	35	1.68
1760818--1760848	13	2.4	13	88	0	53	35	12	16	35	1.87
1765982--1766038	19	2.9	19	82	5	69	33	12	17	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1765978--1766037	20	3.0	20	78	4	68	33	11	18	36	1.87
1766068--1766113	20	2.4	19	85	7	58	34	13	19	32	1.90
1774774--1774803	14	2.1	14	93	0	51	36	16	20	26	1.93
1777937--1777970	9	3.8	9	96	0	59	23	32	0	44	1.54
1777931--1777965	15	2.3	15	95	0	61	22	34	0	42	1.54
1778899--1778931	13	2.5	13	100	0	66	33	15	18	33	1.92
1779009--1779137	52	2.5	52	93	0	213	34	16	19	29	1.93
1781184--1781237	27	2.1	26	86	10	76	24	40	14	20	1.90
1785368--1785577	105	2.0	106	80	0	242	42	17	11	29	1.84
1785552--1785707	48	3.3	49	70	14	137	41	13	14	30	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24