genome.fa.s194.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  8  of  24  ( 2800 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1314412--1314476	33	2.0	33	87	6	96	35	12	20	32	1.89
1315416--1315908	165	3.0	164	79	7	514	50	7	11	30	1.66
1316908--1317091	43	4.3	43	73	4	149	47	12	21	17	1.81
1316896--1317333	85	5.2	85	79	7	378	47	13	20	17	1.82
1316908--1317053	42	3.5	41	75	6	148	47	10	22	18	1.79
1317019--1317168	77	1.9	77	89	0	228	46	14	23	16	1.83
1317194--1317297	41	2.5	42	81	7	113	53	14	16	15	1.73
1317467--1318781	81	16.3	81	77	6	1030	45	12	19	23	1.84
1318383--1318781	82	4.9	81	79	8	382	46	14	18	21	1.84
1319312--1319511	92	2.2	92	82	3	242	26	11	32	30	1.91
1319397--1319723	170	1.9	170	82	0	411	29	11	27	31	1.91
1320963--1320996	8	4.6	7	86	13	50	2	17	0	79	0.86
1320965--1320994	15	1.9	16	93	6	53	3	16	0	80	0.85
1330697--1330757	28	2.2	28	87	0	86	42	8	19	29	1.80
1330785--1330839	28	2.0	28	88	0	83	47	3	16	32	1.64
1330696--1330909	84	2.5	84	83	0	257	42	8	18	30	1.80
1330969--1331030	28	2.2	28	85	5	81	41	12	16	29	1.85
1331022--1331176	50	3.1	50	91	0	238	32	10	18	38	1.86
1331514--1331557	18	2.4	18	96	0	79	31	4	27	36	1.77
1336613--1336653	21	2.0	21	85	9	57	39	12	9	39	1.76
1336692--1336763	20	3.6	20	75	9	67	40	15	13	30	1.86
1336733--1336869	53	2.6	53	95	1	238	37	17	17	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1336911--1336966	22	2.5	22	94	0	103	26	25	10	37	1.88
1341548--1341588	17	2.5	16	84	4	55	53	7	0	39	1.29
1343232--1343307	21	3.7	21	80	3	100	28	17	11	42	1.84
1343253--1343325	20	3.6	20	81	3	101	31	19	13	35	1.91
1343232--1343325	41	2.3	41	98	0	179	29	18	12	39	1.88
1346190--1346259	34	2.1	34	94	0	122	37	10	17	35	1.83
1346291--1346353	19	3.7	18	72	24	64	36	15	12	34	1.86
1346283--1346353	32	2.2	32	94	0	124	36	16	12	33	1.87
1348851--1348895	21	2.1	21	84	8	56	53	4	20	22	1.63
1350698--1350728	15	2.1	15	93	0	53	48	16	22	12	1.80
1352940--1352985	22	2.2	20	81	11	58	34	21	4	39	1.73
1354618--1354661	14	3.4	14	75	18	58	34	4	13	47	1.63
1354610--1354661	25	2.1	25	100	0	104	36	3	11	48	1.58
1356589--1356630	20	2.1	20	100	0	84	28	9	11	50	1.70
1358470--1358689	112	2.0	112	80	6	248	35	16	13	33	1.88
1364511--1364603	48	1.9	48	89	4	143	38	13	11	35	1.82
1365057--1365105	24	2.0	24	84	7	64	28	46	6	18	1.72
1369491--1369548	21	2.8	21	78	2	64	39	12	13	34	1.82
1371300--1371399	19	5.9	19	74	25	107	35	12	15	38	1.84
1371321--1371377	13	3.9	13	76	24	60	35	14	15	35	1.88
1371302--1371396	32	3.0	32	98	0	181	34	12	15	36	1.86
1371439--1371464	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1371419--1371485	33	2.0	33	88	0	98	25	14	16	43	1.86
1373949--1374172	53	4.3	51	81	6	234	29	25	12	32	1.92
1373949--1374172	52	4.3	52	81	3	218	29	25	12	32	1.92
1381956--1382008	13	4.5	13	71	26	55	35	16	13	33	1.88
1381956--1382024	33	2.1	33	89	5	104	36	18	13	31	1.89
1382054--1382079	13	2.0	13	100	0	52	38	15	15	30	1.88
1382591--1382666	21	3.6	21	87	1	107	27	32	1	38	1.65
1391050--1391102	13	4.5	13	71	26	55	35	16	13	33	1.88
1391050--1391118	33	2.1	33	89	5	104	36	18	13	31	1.89
1391148--1391173	13	2.0	13	100	0	52	38	15	15	30	1.88
1391685--1391756	21	3.5	20	86	7	99	29	31	1	37	1.66
1393785--1393840	20	2.8	19	89	5	76	37	16	17	28	1.91
1393910--1393935	13	2.0	13	100	0	52	38	15	15	30	1.88
1393892--1393956	34	2.0	33	90	6	105	43	15	12	29	1.83
1396153--1396201	21	2.3	21	79	6	55	57	4	16	22	1.56
1397997--1398034	15	2.4	16	86	8	60	50	18	18	13	1.78
1400109--1400146	13	2.9	13	96	0	67	34	18	15	31	1.92
1400258--1400303	21	2.2	20	81	11	58	32	19	4	43	1.71
1401942--1401997	29	1.9	29	92	7	96	32	5	32	30	1.80
1401943--1402005	29	2.2	29	85	5	83	33	6	30	30	1.82
1402536--1402587	20	2.6	20	87	6	70	38	15	17	28	1.90
1402643--1402707	21	3.6	19	73	26	70	44	15	12	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1402661--1402686	13	2.0	13	100	0	52	38	15	15	30	1.88
1402643--1402707	34	2.0	33	93	6	114	44	15	12	27	1.82
1409769--1409793	13	1.9	13	100	0	50	40	8	16	36	1.77
1410052--1410356	150	2.0	150	100	0	610	33	18	8	39	1.81
1412758--1412869	48	2.3	48	100	0	224	29	11	14	44	1.80
1414763--1414847	34	2.5	34	90	1	134	31	15	20	32	1.93
1414763--1414843	35	2.3	35	91	2	128	30	16	18	34	1.93
1417066--1417100	11	3.0	12	83	8	54	42	0	0	57	0.99
1417243--1417331	36	2.6	34	81	10	92	57	1	1	40	1.13
1417447--1417489	17	2.5	17	92	0	68	58	6	0	34	1.25
1417502--1417584	6	15.3	6	69	20	58	56	4	0	38	1.21
1417500--1417581	16	5.2	16	85	2	112	58	4	0	36	1.20
1422328--1422433	22	4.5	23	76	13	92	49	0	0	50	1.07
1422362--1422397	18	1.9	18	94	5	63	41	0	0	58	0.98
1422375--1422479	25	4.3	25	73	22	98	40	0	2	56	1.14
1422373--1422482	44	2.6	42	88	8	154	40	0	2	57	1.13
1422374--1422468	13	7.7	13	71	20	71	42	0	2	55	1.11
1422340--1422442	19	4.9	19	73	24	68	45	0	0	53	1.06
1423287--1423355	21	3.4	21	82	11	90	55	0	0	44	0.99
1425394--1425431	20	1.9	20	94	0	67	31	15	10	42	1.81
1425416--1425491	30	2.4	32	89	6	111	40	17	14	27	1.88
1425447--1425473	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1425930--1425967	18	2.1	19	90	5	60	44	7	2	44	1.47
1426723--1426772	20	2.5	20	87	3	66	34	16	14	36	1.88
1426721--1426772	19	2.7	19	84	3	68	32	15	15	36	1.89
1426819--1426870	13	4.5	13	71	26	53	32	11	17	38	1.85
1426802--1426870	33	2.1	32	86	10	95	30	13	18	37	1.89
1429223--1429255	14	2.4	14	100	0	66	66	6	9	18	1.40
1432967--1432992	13	2.0	13	100	0	52	38	15	15	30	1.88
1433420--1433464	20	2.2	20	84	8	54	20	42	26	11	1.85
1436703--1436828	52	2.4	52	93	0	207	27	17	18	36	1.93
1436703--1436851	52	2.9	51	81	7	167	29	17	18	34	1.94
1436840--1436864	13	1.9	13	100	0	50	36	16	16	32	1.90
1436926--1436950	13	1.9	13	100	0	50	32	16	16	36	1.90
1436905--1436970	32	2.0	33	94	2	116	36	16	12	34	1.86
1437909--1438460	43	12.1	43	80	10	600	30	17	26	25	1.98
1437910--1437977	21	3.2	21	64	32	54	30	17	25	26	1.97
1437909--1438460	92	6.1	92	92	1	873	30	17	26	25	1.98
1437745--1438460	184	3.8	184	86	6	922	31	17	25	25	1.97
1438455--1438655	32	6.2	33	92	2	331	18	17	35	27	1.94
1438657--1439071	31	12.6	34	79	10	370	33	13	33	19	1.90
1438658--1439200	65	8.4	65	78	14	371	32	13	32	20	1.92
1438657--1439071	165	2.5	160	86	8	563	33	13	33	19	1.90
1438950--1439079	35	3.7	35	90	4	192	35	11	31	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1439050--1439201	32	4.9	29	81	10	142	31	15	28	24	1.96
1438660--1439203	31	16.8	31	76	14	193	32	13	32	21	1.92
1443720--1443768	20	2.5	20	90	3	73	30	16	18	34	1.93
1443814--1443845	13	2.5	13	94	0	55	34	15	12	37	1.85
1445283--1445377	46	2.1	46	95	0	172	48	8	8	34	1.64
1445760--1445816	22	2.6	22	100	0	114	35	14	14	36	1.86
1446735--1446772	20	1.9	20	88	0	58	21	10	13	55	1.67
1453482--1453506	13	1.9	13	100	0	50	36	0	0	64	0.94
1455098--1455125	10	2.8	10	100	0	56	32	0	35	32	1.58
1467760--1467798	10	3.7	10	86	10	51	87	7	0	5	0.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24