genome.fa.s194.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  7  of  24  ( 2800 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1117044--1117075	13	2.5	13	94	0	55	31	15	18	34	1.93
1123233--1123258	13	2.0	13	100	0	52	30	15	15	38	1.88
1123213--1123276	32	2.0	33	87	3	94	28	14	17	40	1.88
1125275--1125309	2	17.5	2	100	0	70	48	0	0	51	1.00
1125875--1125901	13	2.1	13	100	0	54	44	14	7	33	1.73
1127282--1127334	13	4.5	13	71	26	55	37	15	13	33	1.86
1127282--1127350	33	2.1	33	89	5	104	37	17	13	31	1.88
1127400--1127426	13	2.1	13	100	0	54	40	14	14	29	1.86
1136323--1136348	13	2.0	13	100	0	52	38	15	15	30	1.88
1138427--1138457	15	2.1	15	93	0	53	12	22	16	48	1.80
1146043--1146073	13	2.4	13	94	0	53	41	12	12	32	1.81
1146003--1146057	20	2.8	20	100	0	110	36	18	10	34	1.86
1146023--1146089	33	2.0	33	88	5	100	38	17	11	31	1.87
1146119--1146170	19	2.7	20	90	3	79	42	13	15	28	1.85
1148004--1148048	20	2.2	20	92	0	72	42	6	17	33	1.76
1148004--1148054	20	2.5	20	87	0	57	43	7	15	33	1.76
1150522--1150814	77	3.7	79	75	8	224	29	26	9	34	1.88
1152353--1152582	99	2.4	97	77	4	221	34	12	22	30	1.91
1154140--1154216	21	3.8	20	74	8	75	42	11	16	28	1.84
1154140--1154193	20	2.6	21	85	2	74	40	11	16	31	1.84
1156804--1156989	78	2.4	79	85	2	250	29	23	7	39	1.82
1156725--1157166	79	5.6	79	75	9	332	29	22	10	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1157934--1157984	19	2.6	20	81	3	68	25	13	17	43	1.86
1158042--1158080	20	2.0	20	100	0	78	33	10	15	41	1.81
1158046--1158148	52	2.0	52	92	0	170	30	17	20	32	1.96
1159746--1159771	12	2.2	12	100	0	52	42	0	26	30	1.56
1160414--1160564	73	2.1	73	92	0	248	27	25	11	35	1.90
1162154--1162192	20	1.9	20	84	5	51	46	0	33	20	1.51
1162609--1162667	21	2.8	21	86	0	73	61	0	22	16	1.35
1164175--1164242	32	2.1	32	86	8	93	38	10	8	42	1.70
1166065--1166089	13	1.9	13	100	0	50	32	16	16	36	1.90
1166114--1166262	71	2.1	72	88	2	219	28	24	10	36	1.88
1171000--1171029	10	3.0	10	95	0	51	23	0	20	56	1.42
1173840--1173947	52	2.1	52	89	0	162	33	14	20	31	1.93
1174262--1174369	52	2.1	52	89	0	162	33	14	20	31	1.93
1173732--1174566	422	2.0	422	99	0	1661	35	18	16	29	1.92
1180236--1180360	30	4.1	31	75	3	85	23	28	12	36	1.91
1180236--1180362	61	2.1	60	79	5	139	22	27	12	37	1.91
1180393--1181068	62	10.9	62	80	5	695	25	24	17	32	1.97
1180429--1181084	246	2.7	246	84	4	822	25	24	17	33	1.96
1180393--1181078	188	3.7	184	82	4	779	25	24	17	33	1.96
1181817--1181858	21	2.0	21	95	0	75	26	19	19	35	1.95
1184412--1184595	78	2.3	79	84	1	235	27	20	11	39	1.88
1187002--1187068	34	2.0	34	90	0	107	28	11	19	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1187933--1187973	21	2.0	21	85	9	57	39	12	9	39	1.76
1188013--1188083	20	3.6	19	77	7	70	39	16	14	29	1.88
1188053--1188303	53	4.6	53	86	8	367	35	18	18	27	1.94
1188090--1188316	114	2.0	114	98	0	436	34	18	19	28	1.95
1188335--1188410	21	3.5	22	92	3	120	28	23	10	36	1.88
1190112--1190153	21	2.0	21	85	0	57	42	4	28	23	1.74
1192208--1192232	13	1.9	13	100	0	50	36	16	16	32	1.90
1193849--1193889	21	2.0	21	85	9	57	39	12	9	39	1.76
1193929--1193999	20	3.6	19	77	7	70	39	16	14	29	1.88
1193969--1194105	53	2.6	53	91	1	211	38	18	16	27	1.91
1194166--1194190	13	1.9	13	100	0	50	32	16	20	32	1.94
1197046--1197076	3	10.3	3	92	0	53	38	0	32	29	1.57
1203983--1204026	23	2.0	23	90	4	72	47	11	6	34	1.66
1209843--1209953	20	5.3	20	73	10	96	43	10	15	30	1.81
1210866--1211615	28	25.4	28	80	8	689	22	16	30	30	1.96
1211536--1212099	28	20.4	28	78	7	448	31	15	29	23	1.95
1211536--1212068	27	19.4	27	78	8	438	30	15	30	23	1.95
1211592--1212068	137	3.5	137	82	6	554	31	15	29	23	1.95
1211579--1212075	110	4.5	110	81	7	512	31	15	30	22	1.95
1212994--1213021	14	2.0	14	100	0	56	35	21	14	28	1.92
1214862--1214985	44	2.8	43	79	13	128	44	12	20	22	1.85
1214971--1215191	89	2.5	89	80	1	246	45	14	17	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1215206--1215240	14	2.5	14	90	0	61	45	11	14	28	1.79
1219824--1219968	66	2.2	68	78	5	152	31	15	15	37	1.89
1220135--1220217	33	2.5	34	80	2	96	38	14	15	31	1.88
1220164--1220235	34	2.1	34	84	0	90	34	16	9	38	1.82
1221323--1221445	61	2.0	61	90	3	194	20	13	28	38	1.90
1221753--1221796	23	1.9	24	86	9	65	40	22	6	29	1.80
1222214--1222239	13	2.0	13	100	0	52	38	15	15	30	1.88
1222286--1222357	20	3.8	18	80	14	65	40	13	16	29	1.87
1222346--1222396	20	2.5	20	100	0	102	29	15	19	35	1.93
1224046--1224100	27	2.1	25	86	6	74	1	14	0	83	0.73
1231816--1231880	19	3.6	19	68	16	66	29	12	12	46	1.78
1238293--1238337	21	2.1	21	84	8	56	22	20	4	53	1.63
1240558--1240583	13	2.0	13	100	0	52	30	15	15	38	1.88
1240537--1240601	32	2.0	33	93	6	114	27	12	15	44	1.82
1240537--1240601	19	3.6	19	73	26	70	27	12	15	44	1.82
1244724--1245492	154	5.0	155	81	6	789	27	14	18	40	1.89
1244773--1245517	310	2.4	308	82	5	849	27	14	17	39	1.89
1258680--1258735	19	2.9	19	86	2	76	33	17	17	30	1.94
1258720--1258746	13	2.1	13	100	0	54	40	14	14	29	1.86
1258732--1258772	20	2.0	20	100	0	82	46	14	14	24	1.82
1265229--1265258	13	2.3	13	94	0	51	40	16	10	33	1.82
1265204--1265272	33	2.1	33	89	5	104	37	17	11	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1265301--1265356	19	2.9	19	91	2	85	35	17	16	30	1.92
1265341--1265367	13	2.1	13	100	0	54	40	14	14	29	1.86
1268673--1268791	59	2.0	59	93	0	202	33	7	5	53	1.51
1271333--1271405	20	3.7	19	77	3	56	38	13	16	31	1.88
1273732--1273779	21	2.3	21	85	3	62	41	0	20	37	1.53
1273898--1273967	13	5.8	13	71	19	71	37	12	17	32	1.87
1278199--1278252	20	2.7	20	88	5	74	33	14	14	37	1.88
1284523--1284573	21	2.5	22	84	9	63	33	19	0	47	1.50
1285425--1285473	20	2.3	22	89	10	75	34	4	18	42	1.69
1285438--1285480	20	2.0	21	86	8	61	39	4	20	34	1.74
1289347--1289373	13	2.1	13	100	0	54	40	14	14	29	1.86
1289681--1289947	127	2.1	127	86	2	367	32	9	16	41	1.80
1296720--1296817	50	2.0	50	89	0	151	6	22	30	40	1.78
1296784--1296934	30	5.1	30	87	1	205	5	17	34	42	1.73
1296765--1296934	60	2.8	59	88	2	232	5	18	33	42	1.74
1296825--1296928	12	8.2	12	66	21	52	3	17	35	43	1.67
1297254--1297294	16	2.6	16	92	0	64	17	24	19	39	1.92
1297812--1297850	17	2.4	16	83	8	51	25	5	0	69	1.09
1298352--1299428	42	25.4	43	72	9	459	35	18	27	18	1.94
1298343--1298617	43	6.4	43	77	8	202	35	17	30	16	1.92
1298299--1299222	170	5.4	169	76	7	683	34	18	28	18	1.95
1298791--1299119	128	2.6	126	78	9	351	36	19	26	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1307412--1307456	22	2.2	20	84	8	54	26	8	15	48	1.74
1307794--1307943	78	1.9	78	81	5	178	30	26	13	30	1.94
1308459--1309006	42	13.1	42	76	5	356	20	29	19	30	1.97
1308996--1309352	168	2.1	167	85	4	468	19	27	11	41	1.85
1309026--1309399	168	2.2	168	84	2	457	19	26	12	41	1.87
1309024--1309399	84	4.5	83	73	4	281	19	26	11	41	1.86
1310138--1310179	21	2.0	22	85	4	59	30	2	7	59	1.37
1311848--1311884	13	2.8	13	91	0	56	29	13	18	37	1.90
1314326--1314382	19	2.9	19	81	2	69	31	15	15	36	1.90
1314432--1314456	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24