genome.fa.s194.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  3  of  24  ( 2800 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353909--354006	32	3.0	32	96	1	178	35	17	12	34	1.87
356740--356764	13	1.9	13	100	0	50	24	16	20	40	1.91
357779--357804	13	2.0	13	100	0	52	38	15	15	30	1.88
361861--361891	15	2.1	15	93	0	53	48	16	22	12	1.80
366533--366558	13	2.0	13	100	0	52	38	15	15	30	1.88
366515--366578	32	2.0	33	90	3	103	42	15	14	28	1.86
372240--372264	13	1.9	13	100	0	50	32	20	16	32	1.94
374651--374698	20	2.4	20	86	6	62	31	12	20	35	1.90
374696--374735	20	2.0	20	95	0	71	32	12	20	35	1.90
374669--374731	33	1.9	33	87	6	92	30	12	20	36	1.90
378060--378086	13	2.1	13	100	0	54	40	14	14	29	1.86
378038--378106	33	2.1	33	86	5	95	37	18	13	30	1.89
380135--380370	118	2.0	118	100	0	472	33	8	16	41	1.79
380405--380452	19	2.5	19	90	6	71	43	12	12	31	1.80
380417--380453	19	1.9	19	100	0	74	40	10	10	37	1.75
380563--380614	21	2.6	21	76	14	56	26	23	3	46	1.69
387023--387083	9	7.1	9	72	10	56	11	44	1	42	1.50
387028--387062	12	2.9	12	84	16	54	11	48	0	40	1.39
386999--387113	42	2.7	42	89	0	167	9	44	1	44	1.47
389501--389550	23	2.1	25	88	7	77	46	8	10	36	1.67
389641--389704	33	2.0	32	87	3	92	31	12	12	43	1.80
389751--389859	52	2.1	52	80	0	128	33	14	17	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391900--392214	157	2.0	159	90	3	503	41	11	12	34	1.79
393440--394064	154	4.1	152	77	7	473	26	13	18	41	1.88
393440--393967	153	3.4	153	77	7	489	27	13	17	41	1.88
394231--394263	17	2.0	17	88	5	50	57	3	0	39	1.14
398871--398914	22	2.0	22	86	8	63	61	0	0	38	0.96
398856--398912	29	2.0	28	83	10	71	56	0	0	43	0.99
400056--400111	28	1.9	28	89	7	85	35	17	23	23	1.95
400125--400461	53	6.4	51	69	14	195	29	12	27	30	1.93
400279--400353	27	2.7	28	87	2	98	20	20	34	25	1.96
402825--402850	13	2.0	13	100	0	52	38	15	15	30	1.88
402890--402957	19	3.9	18	76	23	83	38	14	11	35	1.83
402912--402936	13	1.9	13	100	0	50	32	16	16	36	1.90
402893--402955	32	2.0	32	96	0	117	36	15	12	34	1.86
404636--404921	97	2.9	98	73	11	253	35	11	24	29	1.90
405862--405887	13	2.0	13	100	0	52	38	15	15	30	1.88
405844--405907	32	2.0	33	87	9	96	39	17	14	29	1.88
408102--408146	21	2.1	21	84	8	56	53	4	20	22	1.63
409902--409940	15	2.6	15	91	0	60	51	15	20	12	1.76
411958--412033	25	3.6	19	74	20	71	27	14	14	43	1.84
412019--412044	13	2.0	13	100	0	52	30	15	15	38	1.88
412165--412210	21	2.2	20	81	11	58	32	19	4	43	1.71
414462--414515	20	2.7	20	88	5	74	40	18	14	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414576--414601	13	2.0	13	100	0	52	38	15	15	30	1.88
414560--414621	33	1.9	33	87	9	92	40	17	12	29	1.87
425379--425403	13	1.9	13	100	0	50	32	8	16	44	1.76
425444--425524	42	1.9	42	92	0	135	32	14	16	37	1.89
425451--425525	20	3.7	20	72	13	71	33	14	16	36	1.89
427584--427642	21	2.8	21	81	0	64	61	0	20	18	1.35
428537--428584	23	2.0	24	84	11	64	16	2	16	64	1.39
430441--430507	20	3.1	23	70	16	79	31	16	14	37	1.89
431785--431835	19	2.6	20	81	9	61	29	11	13	45	1.79
432258--432311	20	2.7	20	94	2	90	38	9	20	31	1.84
432258--432335	21	3.8	20	82	3	75	37	10	19	33	1.85
436013--436072	24	2.6	22	82	10	66	5	0	8	86	0.69
436005--436072	36	1.9	35	85	5	93	4	1	8	85	0.79
436019--436072	15	3.6	14	83	11	63	5	0	7	87	0.68
437144--437254	51	2.2	51	90	0	168	32	15	25	27	1.95
437237--437310	28	2.6	28	85	10	98	27	20	29	22	1.98
439652--439758	20	5.7	19	72	18	82	42	13	15	28	1.85
439774--439803	13	2.3	13	100	0	60	40	13	16	30	1.87
440393--440494	41	2.5	41	85	7	136	44	9	26	19	1.82
440512--440663	42	3.5	42	76	13	114	46	11	25	17	1.82
440653--441058	61	6.6	61	86	3	512	31	17	26	24	1.97
440653--441429	123	6.3	122	74	9	601	32	17	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440674--441056	184	2.1	183	84	2	500	31	17	25	25	1.97
441034--441154	45	2.7	45	82	12	126	40	14	27	18	1.88
441149--441431	61	4.6	61	84	1	361	30	18	27	24	1.98
440776--441533	374	2.0	373	88	2	1112	34	16	27	22	1.95
441402--441690	43	6.6	43	77	9	264	36	12	29	21	1.90
441402--441692	131	2.2	133	82	7	362	36	12	28	21	1.90
441409--441690	88	3.2	86	79	8	302	36	12	28	21	1.91
441666--441872	61	3.4	61	84	7	262	26	20	28	25	1.99
447977--448087	51	2.2	51	88	0	159	34	16	21	27	1.95
450492--450546	20	2.7	21	86	8	78	38	14	14	32	1.87
450561--450590	13	2.3	13	94	0	51	40	10	16	33	1.82
465149--465187	20	2.0	20	100	0	78	15	5	35	43	1.69
465223--465358	61	2.2	61	82	2	175	37	13	24	24	1.92
465315--465614	52	5.8	51	80	5	275	35	17	23	23	1.95
465315--465621	156	2.0	153	80	4	348	35	17	23	23	1.95
465627--465709	43	1.9	43	82	0	103	33	18	22	25	1.96
465723--465905	32	5.7	32	82	5	219	18	19	31	31	1.95
465707--465905	96	2.1	96	88	2	294	18	18	33	30	1.95
467035--467085	27	2.0	26	81	11	61	25	37	17	19	1.94
473517--473548	10	3.1	11	91	8	50	37	0	25	37	1.56
479606--479654	20	2.5	20	79	0	62	42	12	12	32	1.79
480205--480281	36	2.2	36	84	13	99	32	22	11	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480705--480812	52	2.1	52	85	0	144	31	17	15	35	1.92
480859--480921	32	1.9	33	90	3	101	38	12	19	30	1.89
483089--483987	448	2.0	448	97	0	1708	35	18	12	33	1.89
485686--485757	32	2.2	33	87	5	101	37	11	11	40	1.76
485795--485819	13	1.9	13	100	0	50	32	16	16	36	1.90
487007--487033	13	2.1	13	100	0	54	33	14	14	37	1.88
486988--487052	32	2.0	32	87	3	94	36	12	12	38	1.80
487128--487256	52	2.5	52	94	2	224	35	17	17	29	1.93
489379--489447	27	2.6	27	100	0	138	23	43	20	13	1.86
502609--502931	28	10.8	29	77	8	199	28	28	16	26	1.97
502609--502931	57	5.4	58	72	11	206	28	28	16	26	1.97
502607--502776	29	6.0	27	80	7	142	27	31	18	22	1.97
502761--502835	35	2.2	35	87	2	116	21	33	10	34	1.88
502761--502852	35	2.7	35	82	1	105	19	31	13	35	1.90
502826--502977	28	5.3	28	84	5	182	37	27	15	19	1.92
502997--503336	48	7.0	49	84	5	420	23	26	18	31	1.97
502997--503286	149	2.0	148	92	0	481	23	26	18	31	1.97
504066--504092	13	2.1	13	100	0	54	33	14	14	37	1.88
504047--504111	32	2.0	32	87	3	94	36	12	12	38	1.80
504187--504315	52	2.5	52	94	2	224	35	17	17	29	1.93
508793--508847	3	18.3	3	96	0	101	32	32	0	34	1.58
510491--510534	20	2.2	20	88	4	63	29	15	18	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513410--513447	3	12.7	3	100	0	76	68	0	0	31	0.90
514879--514924	24	1.9	24	86	0	65	45	26	4	23	1.71
514905--514981	28	2.8	28	80	7	79	49	20	5	24	1.69
516886--516931	21	2.1	22	84	4	58	19	26	19	34	1.96
519455--519500	24	1.9	24	90	0	74	43	28	6	21	1.77
521912--521955	21	2.1	21	100	0	88	15	43	0	40	1.47
521917--521955	10	3.8	10	86	6	60	15	43	0	41	1.46
525861--525906	22	2.2	20	88	7	65	54	6	6	32	1.52
526245--526284	3	13.3	3	100	0	80	67	0	0	32	0.91
528615--528650	16	2.1	16	90	10	54	2	8	0	88	0.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24