genome.fa.s194.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  4  of  24  ( 2800 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528622--528650	10	3.0	10	95	5	51	0	6	0	93	0.36
528623--528651	14	2.0	15	93	6	51	0	10	0	89	0.48
531096--531135	20	2.0	20	100	0	80	80	10	0	10	0.92
534551--534678	52	2.5	52	94	3	224	30	17	17	33	1.94
534687--534711	13	1.9	13	100	0	50	36	16	16	32	1.90
534752--534818	33	2.0	33	88	0	98	40	13	11	34	1.81
534774--534798	13	1.9	13	100	0	50	32	16	16	36	1.90
540898--541112	98	2.2	98	81	4	256	36	10	22	29	1.88
543823--543883	19	3.5	19	71	28	64	34	13	14	37	1.85
543817--543885	32	2.2	32	94	5	122	36	13	14	36	1.85
543903--543929	13	2.1	13	100	0	54	33	14	14	37	1.88
543938--544033	32	3.4	32	64	31	90	36	15	18	29	1.92
543938--544059	52	2.3	52	95	0	217	36	15	18	29	1.92
545514--545539	13	2.0	13	100	0	52	30	15	15	38	1.88
545493--545557	32	2.0	33	93	6	114	27	12	15	44	1.82
545493--545557	19	3.6	19	73	26	70	27	12	15	44	1.82
548088--548123	13	2.8	13	91	0	54	30	11	19	38	1.86
550207--550237	15	2.1	15	93	0	53	12	22	16	48	1.80
552040--552084	21	2.1	21	84	8	56	22	20	4	53	1.63
554307--554332	13	2.0	13	100	0	52	30	15	15	38	1.88
554286--554350	32	2.0	33	90	6	105	29	12	13	44	1.81
554286--554350	19	3.6	19	71	26	61	29	12	13	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556858--556911	20	2.7	20	91	2	81	33	16	14	35	1.90
556858--556930	21	3.5	20	88	7	94	34	16	13	35	1.88
558199--558297	49	2.0	49	86	3	137	39	13	8	39	1.74
558476--558505	15	2.0	15	93	0	51	46	3	0	50	1.18
558812--558846	18	1.9	18	94	0	61	2	20	8	68	1.29
558851--558900	3	16.7	3	95	0	91	32	0	2	66	1.03
559348--559416	32	2.2	32	81	0	75	34	18	13	33	1.90
562694--562721	13	2.2	13	100	0	56	39	17	14	28	1.89
562762--562828	33	2.0	33	88	0	98	40	13	11	34	1.81
562784--562808	13	1.9	13	100	0	50	32	16	16	36	1.90
564497--564551	3	18.3	3	96	0	101	36	0	32	30	1.58
569381--570381	49	20.8	49	76	9	841	31	18	25	24	1.97
569381--570381	101	10.4	98	83	4	985	31	18	25	24	1.97
569882--570115	39	5.5	39	72	17	171	25	19	28	26	1.99
569828--570371	87	6.0	87	87	3	611	29	17	26	26	1.98
570398--570550	28	5.3	29	86	10	176	17	17	33	31	1.94
570398--570550	57	2.7	57	84	11	181	17	17	33	31	1.94
570541--570684	33	4.5	32	76	11	136	34	13	31	20	1.91
570631--570793	27	5.8	27	76	12	157	29	15	33	21	1.95
570597--570793	88	2.2	88	85	4	279	31	15	31	21	1.94
570774--570995	63	3.5	63	82	3	250	32	13	28	25	1.93
570823--570985	32	5.1	32	82	3	204	33	14	28	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586615--586685	26	2.7	26	78	10	74	30	12	19	36	1.89
586609--586685	14	5.8	13	73	14	68	32	11	19	36	1.88
586708--586775	28	2.5	28	85	2	84	25	25	20	29	1.99
586950--587057	32	3.4	32	79	5	119	28	28	15	26	1.96
587055--587142	43	2.0	43	86	0	122	29	23	14	31	1.95
587233--587659	52	8.1	52	70	12	178	23	25	15	36	1.94
587312--587505	104	1.9	104	83	0	253	23	24	14	36	1.93
588218--588255	20	1.9	20	88	0	58	34	15	10	39	1.82
588379--588648	104	2.6	104	85	1	335	23	25	14	35	1.93
588379--588633	52	4.9	52	72	7	212	24	25	15	34	1.94
589406--589456	20	2.5	20	93	0	84	35	15	11	37	1.84
594321--594368	25	1.9	25	91	0	78	37	20	2	39	1.65
603308--603356	23	2.1	24	84	3	64	34	8	2	55	1.41
605876--605929	20	2.7	20	86	13	76	37	18	11	33	1.86
610272--610301	14	2.1	14	93	0	51	63	10	0	26	1.26
614144--614206	19	3.3	20	79	14	71	34	12	12	39	1.82
621359--621466	31	3.5	31	80	0	117	47	13	16	22	1.82
622234--622259	13	2.0	13	100	0	52	30	15	15	38	1.88
624338--624380	20	2.1	20	82	4	50	9	27	44	18	1.80
624820--624844	13	1.9	13	100	0	50	32	16	20	32	1.94
626925--626955	15	2.1	15	93	0	53	12	22	16	48	1.80
628723--628767	21	2.1	21	84	8	56	22	20	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631082--631138	20	2.8	20	86	7	80	26	15	15	42	1.87
631484--631547	30	2.2	29	80	2	74	37	9	28	25	1.87
631653--631711	31	1.9	31	85	0	82	50	15	15	18	1.78
631873--631936	30	2.1	31	88	2	94	46	12	23	17	1.81
632397--632492	30	3.2	30	69	16	83	51	16	15	16	1.78
632386--632532	59	2.5	58	86	2	204	52	16	12	19	1.74
632735--632976	60	4.1	58	75	8	213	49	16	16	17	1.80
632785--633107	118	2.7	117	77	3	315	47	16	17	19	1.83
635783--635839	20	2.8	20	78	7	62	38	15	17	28	1.91
643408--643456	20	2.5	20	89	0	71	36	14	16	32	1.89
649444--649469	13	2.0	13	100	0	52	30	15	15	38	1.88
649454--649509	19	2.9	19	81	2	67	32	16	12	39	1.85
649957--649986	14	2.1	15	93	6	53	13	13	23	50	1.77
650004--650048	23	2.0	23	82	8	56	31	6	22	40	1.80
650982--651010	2	14.5	2	100	0	58	51	0	0	48	1.00
656170--656196	12	2.2	12	100	0	54	7	25	18	48	1.74
656282--656346	33	2.0	33	85	11	89	30	16	15	36	1.90
656397--656448	19	2.7	20	88	8	72	42	15	15	26	1.87
662464--662500	13	2.8	13	91	0	56	40	16	10	32	1.83
667053--667087	15	2.3	15	95	0	61	28	28	0	42	1.56
670673--670708	13	2.8	13	91	0	54	38	19	11	30	1.86
670766--670820	21	2.5	22	94	5	103	36	10	25	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670808--670838	10	3.1	10	90	0	53	41	6	29	22	1.78
670862--670998	53	2.6	53	91	1	220	27	17	17	37	1.92
671078--671118	21	2.0	21	85	9	57	39	9	12	39	1.76
672320--672486	33	5.4	32	78	13	154	24	27	11	35	1.91
672542--672630	39	2.3	39	84	3	117	24	24	13	37	1.92
672542--672640	39	2.5	39	81	3	92	25	25	13	36	1.92
672568--672757	81	2.3	80	76	6	184	20	26	12	40	1.88
672860--672945	31	2.8	32	70	12	88	27	27	26	17	1.98
673003--673089	31	2.8	31	76	0	93	27	28	26	17	1.97
672860--673600	149	5.0	148	84	4	893	27	24	25	22	2.00
673150--673238	31	2.9	31	81	0	115	26	26	26	19	1.99
673299--673388	31	2.9	31	86	0	135	28	30	24	16	1.97
673443--673542	31	3.2	31	79	0	110	25	31	27	17	1.97
674068--674144	21	3.8	20	77	3	73	42	11	15	29	1.82
674068--674121	20	2.6	21	88	2	74	40	9	16	33	1.80
677673--677898	81	2.8	80	75	5	211	30	11	28	30	1.91
683331--683359	13	2.2	13	100	0	58	93	6	0	0	0.36
683330--683382	22	2.4	22	87	0	70	81	13	3	1	0.92
684598--685166	28	19.9	28	79	7	520	27	30	19	22	1.98
684598--685129	141	3.7	140	82	6	574	27	30	19	22	1.98
684606--685170	113	5.0	112	76	9	547	27	30	19	23	1.98
686048--686139	40	2.3	40	86	0	130	36	13	13	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686048--686139	20	4.6	20	76	2	87	36	13	13	36	1.83
688641--688688	25	2.0	24	84	12	62	35	31	8	25	1.85
692733--692757	12	2.1	12	100	0	50	32	0	0	68	0.90
702799--702900	43	2.4	43	96	0	186	34	15	18	31	1.93
702884--702940	19	2.9	20	86	5	80	33	14	12	40	1.83
702926--702952	13	2.1	13	100	0	54	40	7	14	37	1.74
704336--704361	13	2.0	13	100	0	52	30	15	15	38	1.88
706907--706945	13	3.0	13	96	0	69	35	15	17	30	1.91
706931--707009	20	3.7	20	78	15	77	44	15	15	25	1.85
709020--709050	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24