Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2800 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3889491--3889539
18
2.7
18
75
12
55
42
2
0
55
1.11
3889859--3889892
11
3.0
11
86
4
50
67
0
0
32
0.91
3892071--3892134
30
2.2
30
88
2
94
37
23
12
26
1.90
3892096--3892215
14
8.1
15
68
12
70
36
26
7
29
1.84
3891967--3892138
29
5.9
29
72
4
96
32
22
15
30
1.94
3892088--3892212
29
4.2
29
71
10
83
38
24
8
29
1.84
3892179--3892213
17
2.0
18
88
5
54
37
25
5
31
1.80
3893207--3893512
133
2.3
133
77
5
321
36
14
20
29
1.91
3893490--3893615
66
1.9
67
82
11
161
42
12
18
26
1.86
3896345--3896399
2
28.5
2
92
7
96
50
0
0
49
1.00
3898659--3898691
11
2.8
12
86
9
50
78
3
6
12
1.04
3899762--3899823
22
2.7
23
80
12
74
51
6
0
41
1.27
3900301--3900334
18
1.9
17
88
5
50
55
2
8
32
1.45
3900340--3900378
20
2.0
20
85
10
53
38
0
2
58
1.12
3900535--3900565
14
2.1
15
94
5
55
22
0
0
77
0.77
3905302--3905357
16
3.5
17
76
11
55
41
7
12
39
1.70
3914124--3914153
2
15.0
2
100
0
60
50
0
0
50
1.00
3917708--3917852
72
2.0
72
89
0
218
29
28
20
21
1.98
3922299--3922344
23
2.0
24
86
4
67
73
0
21
4
1.00
3922311--3922350
14
2.8
15
77
14
57
70
0
25
5
1.08
3924833--3924876
3
14.7
3
100
0
88
34
0
0
65
0.93
3927799--3927837
2
19.5
2
100
0
78
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3929463--3929517
3
18.3
3
100
0
110
67
0
0
32
0.91
3929840--3929877
20
1.9
20
88
0
58
39
2
2
55
1.28
3931615--3931666
2
26.5
2
92
3
88
48
0
51
0
1.00
3931944--3931979
19
1.9
20
88
11
58
55
0
0
44
0.99
3931916--3931987
33
2.3
29
76
11
72
54
0
0
45
0.99
3932497--3932605
35
3.1
34
75
22
102
54
0
2
43
1.15
3932726--3932780
23
2.5
22
85
11
69
52
0
0
47
1.00
3933682--3933733
16
3.2
16
88
0
77
50
0
0
50
1.00
3933801--3933830
2
15.0
2
100
0
60
50
0
0
50
1.00
3935647--3935686
21
1.9
21
85
10
55
35
27
0
37
1.57
3935686--3935710
2
12.5
2
100
0
50
52
0
0
48
1.00
3935880--3935956
30
2.6
30
80
12
86
53
5
10
31
1.57
3936948--3936993
2
22.5
2
91
4
74
45
2
2
50
1.26
3940519--3940577
17
3.6
17
77
9
68
45
0
0
54
0.99
3940565--3940632
17
4.0
16
76
17
66
29
0
0
70
0.87
3940586--3940632
12
4.2
12
81
13
64
25
0
0
74
0.82
3940565--3940632
34
2.0
35
85
8
95
29
0
0
70
0.87
3942809--3942908
49
2.0
50
94
3
175
33
22
15
30
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!