genome.fa.s194.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  6  of  24  ( 2800 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915731--915796	33	2.0	33	91	5	107	33	18	13	34	1.90
918188--918234	22	2.2	23	85	14	66	46	0	21	31	1.51
924505--924537	13	2.5	13	95	0	57	33	9	15	42	1.78
924485--924548	33	1.9	33	87	6	94	31	12	15	40	1.85
924580--924630	19	2.6	20	87	3	68	31	17	19	31	1.95
927572--927664	45	2.1	45	97	0	177	30	24	8	36	1.86
933007--933960	30	32.0	30	80	4	914	25	32	12	29	1.92
934227--934278	19	2.6	21	87	6	72	38	11	15	34	1.83
936629--936867	51	4.6	51	81	4	284	29	25	11	33	1.91
936798--937022	80	2.8	79	87	2	315	28	25	14	31	1.95
936977--937073	51	1.9	51	86	0	140	32	25	8	32	1.86
937057--937131	28	2.6	30	87	8	104	24	32	18	25	1.97
936847--937345	237	2.1	237	82	4	585	26	26	14	33	1.94
938312--938540	61	3.9	59	76	6	218	27	34	9	29	1.88
938312--938540	91	2.6	89	80	4	239	27	34	9	29	1.88
938312--938540	59	3.9	60	76	4	234	27	34	9	29	1.88
938313--938540	30	7.7	30	81	2	221	26	34	9	29	1.88
938755--938891	52	2.6	52	80	2	132	26	23	16	34	1.95
938818--938944	52	2.4	52	76	12	134	28	25	14	31	1.95
941422--941602	97	1.9	97	85	0	254	27	25	11	35	1.90
949474--949566	20	4.7	19	77	10	71	29	15	17	38	1.90
949595--949664	33	2.1	32	84	10	88	34	10	15	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951247--951279	12	2.8	12	90	0	57	45	0	27	27	1.54
958292--958318	13	2.1	13	100	0	54	29	14	14	40	1.86
958308--958363	20	2.9	19	82	7	60	33	16	10	39	1.83
958689--958742	19	2.8	20	82	2	65	29	16	16	37	1.91
958771--958819	13	4.2	13	71	28	56	30	12	18	38	1.87
972923--972978	20	2.8	20	89	5	78	41	12	14	32	1.83
975719--975778	28	2.2	26	83	16	84	16	15	0	68	1.22
975722--975778	29	2.0	29	93	6	98	17	14	0	68	1.21
980858--980893	18	2.0	18	100	0	72	38	11	0	50	1.38
982405--982460	19	2.9	19	89	2	76	37	17	14	30	1.90
982426--982490	32	2.0	33	87	3	96	41	16	15	26	1.88
984926--984954	13	2.2	13	100	0	58	41	17	13	27	1.87
988877--988934	21	2.8	21	97	2	109	25	15	5	53	1.63
989533--989557	3	8.3	3	100	0	50	32	36	0	32	1.58
991197--991246	20	2.6	19	83	3	64	36	18	14	32	1.90
997848--997923	21	3.6	21	76	0	71	32	9	15	42	1.79
1000038--1000135	36	2.9	34	84	11	123	29	26	12	31	1.92
1001262--1001323	31	1.9	32	93	6	108	27	9	16	46	1.78
1001377--1001432	20	2.8	20	89	5	78	28	17	16	37	1.91
1003162--1003186	13	1.9	13	100	0	50	36	16	16	32	1.90
1003142--1003208	33	2.0	33	88	0	98	32	11	14	40	1.83
1003249--1003273	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003282--1003410	52	2.5	52	96	0	231	34	18	17	29	1.94
1007411--1007448	13	2.9	13	96	0	67	31	15	18	34	1.92
1008984--1009014	15	2.1	15	93	0	53	12	22	16	48	1.80
1012965--1013020	20	2.8	20	89	5	78	28	17	16	37	1.91
1013352--1013433	32	2.6	32	82	0	110	41	8	19	30	1.81
1017212--1017344	59	2.3	60	80	5	155	31	13	11	43	1.79
1017404--1017568	58	2.8	58	83	0	204	29	7	14	48	1.72
1020913--1021041	52	2.5	52	96	0	231	29	17	17	36	1.92
1021101--1021127	13	2.1	13	100	0	54	40	14	14	29	1.86
1021085--1021147	33	1.9	33	90	3	101	41	17	9	31	1.82
1021919--1022540	49	13.0	52	77	13	361	33	17	24	24	1.96
1021985--1022540	49	11.8	49	78	11	563	32	18	24	24	1.97
1021926--1022540	141	4.3	141	78	10	576	33	17	24	24	1.97
1021985--1022545	92	6.0	92	89	3	818	32	18	25	24	1.97
1022542--1022739	32	6.2	33	84	5	264	20	18	33	27	1.96
1022740--1022938	61	3.2	60	80	10	220	34	15	33	17	1.91
1022765--1022948	34	5.7	34	72	14	156	33	13	34	18	1.90
1022764--1022967	67	3.2	61	83	7	248	33	14	33	19	1.91
1022703--1022952	128	2.0	128	84	6	328	32	14	34	19	1.92
1022925--1022982	29	2.0	30	86	6	84	29	13	29	27	1.94
1035244--1035395	52	2.9	52	91	1	234	30	16	17	36	1.92
1036232--1036840	49	12.8	49	77	10	568	31	18	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036285--1036845	92	6.0	92	89	4	791	31	18	25	24	1.98
1036833--1037030	32	6.2	32	86	6	246	17	17	34	29	1.93
1036833--1037030	64	3.1	64	88	7	273	17	17	34	29	1.93
1036833--1037037	97	2.2	95	86	5	281	19	17	35	28	1.94
1037074--1037117	22	2.0	22	86	0	61	34	18	25	22	1.96
1037096--1037298	34	6.4	33	71	15	178	31	14	35	18	1.91
1037160--1037269	27	3.8	27	70	15	85	26	18	35	20	1.95
1037135--1037302	61	2.8	61	98	0	318	29	14	35	19	1.92
1037152--1037332	34	6.0	30	66	16	97	29	16	33	20	1.95
1037274--1037332	29	2.0	30	86	3	84	27	16	30	25	1.97
1052067--1052092	13	2.0	13	100	0	52	38	15	15	30	1.88
1054591--1054633	21	2.0	21	95	0	77	41	9	13	34	1.77
1054501--1054776	112	2.5	112	86	1	383	36	13	15	34	1.87
1054703--1054759	21	2.8	21	83	2	71	40	8	12	38	1.74
1054897--1054934	20	1.9	20	94	0	67	44	10	13	31	1.77
1059011--1059063	19	2.6	21	88	5	74	37	3	0	58	1.16
1059014--1059065	20	2.6	20	81	6	61	38	3	0	57	1.17
1059183--1059430	102	2.4	102	88	1	345	54	6	4	34	1.48
1059286--1059337	14	3.9	14	75	7	54	63	0	0	36	0.95
1061032--1061080	24	2.0	24	84	7	64	48	0	4	46	1.20
1061961--1061986	3	8.7	3	100	0	52	30	0	0	69	0.89
1063141--1063187	2	23.5	2	100	0	94	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070878--1070930	16	3.3	16	81	0	61	35	26	11	26	1.90
1071009--1071054	22	2.1	22	83	0	56	19	19	26	34	1.96
1073258--1073322	33	2.0	33	87	6	96	33	16	13	35	1.89
1073351--1073412	19	3.2	19	88	11	90	33	17	14	33	1.90
1078734--1078778	18	2.5	18	96	0	81	35	11	6	46	1.66
1078677--1078844	76	2.2	75	84	4	203	32	10	11	45	1.73
1078816--1078894	20	4.2	19	71	15	65	39	6	8	45	1.61
1078753--1078909	57	2.7	58	82	2	199	33	10	10	45	1.73
1078923--1079014	29	3.2	29	63	9	80	29	11	10	47	1.74
1078919--1079061	59	2.5	59	95	2	254	27	12	11	47	1.77
1081128--1081168	20	2.0	20	86	9	57	53	0	2	43	1.13
1082747--1082805	20	2.9	20	92	2	100	33	10	11	44	1.75
1082861--1082885	13	1.9	13	100	0	50	32	16	16	36	1.90
1084924--1084966	20	2.1	20	86	4	59	9	30	44	16	1.79
1085407--1085438	13	2.5	13	94	0	55	31	15	18	34	1.93
1091596--1091621	13	2.0	13	100	0	52	30	15	15	38	1.88
1091576--1091639	32	2.0	33	87	3	94	28	14	17	40	1.88
1093638--1093674	2	18.5	2	100	0	74	48	0	0	51	1.00
1094241--1094267	13	2.1	13	100	0	54	44	14	7	33	1.73
1095648--1095700	13	4.5	13	71	26	55	37	15	13	33	1.86
1095648--1095716	33	2.1	33	89	5	104	37	17	13	31	1.88
1095766--1095792	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1102442--1102474	17	1.9	17	88	11	50	48	6	9	36	1.60
1110392--1110436	18	2.5	18	96	0	81	35	11	6	46	1.66
1110335--1110502	76	2.2	75	84	4	203	32	10	11	45	1.73
1110474--1110552	20	4.2	19	71	15	65	39	6	8	45	1.61
1110411--1110567	57	2.7	58	82	2	199	33	10	10	45	1.73
1110581--1110672	29	3.2	29	63	9	80	29	11	10	47	1.74
1110577--1110719	59	2.5	59	95	2	254	27	12	11	47	1.77
1114387--1114444	20	2.9	20	89	5	91	34	10	12	43	1.76
1114501--1114525	13	1.9	13	100	0	50	32	16	16	36	1.90
1116560--1116602	20	2.1	20	86	4	59	9	30	44	16	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24