genome.fa.s194.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  11  of  24  ( 2800 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1787878--1787903	13	2.0	13	100	0	52	30	15	15	38	1.88
1787858--1787921	32	2.0	33	87	3	94	28	14	17	40	1.88
1788607--1788650	21	2.1	21	83	8	54	25	31	4	38	1.76
1788796--1788836	22	2.0	20	85	9	55	58	14	9	17	1.62
1790455--1790480	13	2.0	13	100	0	52	38	15	15	30	1.88
1794393--1794437	21	2.1	21	84	8	56	22	20	4	53	1.63
1794571--1794603	15	2.1	16	88	5	50	30	9	3	57	1.45
1798583--1798621	21	1.9	21	89	5	62	51	12	20	15	1.76
1799680--1799729	20	2.5	20	90	0	73	30	14	12	44	1.81
1799696--1799737	20	2.1	20	90	0	66	28	19	9	42	1.82
1800184--1800318	72	1.9	72	84	0	180	25	21	25	27	1.99
1800578--1800624	20	2.3	20	85	3	58	40	10	14	34	1.81
1801454--1801801	165	2.1	166	83	7	442	31	12	7	47	1.70
1803837--1804115	141	2.0	140	86	0	387	26	16	17	39	1.91
1803991--1804316	152	2.1	153	78	6	338	22	15	21	40	1.91
1806855--1806894	16	2.5	16	87	0	53	57	12	17	12	1.65
1809278--1809342	33	2.0	33	84	6	87	32	15	15	36	1.89
1809404--1809429	13	2.0	13	100	0	52	38	15	15	30	1.88
1809416--1809467	20	2.6	20	87	6	70	36	17	17	28	1.92
1811841--1811912	28	2.6	28	88	0	108	29	20	27	22	1.99
1811977--1812261	51	5.6	51	86	2	340	32	10	25	31	1.89
1811975--1812257	153	1.9	154	86	1	408	32	10	26	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814602--1814627	13	2.0	13	100	0	52	38	15	15	30	1.88
1814769--1814824	21	2.7	21	97	0	103	35	16	10	37	1.83
1815402--1815615	118	1.8	116	81	11	267	40	13	26	20	1.89
1815520--1815658	42	3.2	45	74	14	132	39	14	27	18	1.90
1815641--1815934	61	4.9	59	86	5	374	29	20	24	25	1.99
1815641--1815960	121	2.7	118	82	9	375	30	20	24	25	1.99
1815964--1816695	61	12.5	59	87	5	792	26	19	27	26	1.99
1816327--1816469	28	5.2	28	63	9	78	28	20	25	25	1.99
1815969--1816695	116	6.2	110	83	7	670	25	20	27	26	1.99
1817683--1817725	1	43.0	1	80	0	50	0	2	6	90	0.52
1817683--1817726	17	2.6	17	92	3	72	0	2	9	88	0.59
1817667--1817725	20	2.9	19	85	5	64	0	8	5	86	0.70
1817690--1817725	11	3.3	11	92	7	56	0	0	8	91	0.41
1830168--1830238	28	2.5	28	90	0	106	28	21	28	22	1.99
1830272--1830344	27	2.6	28	87	8	105	21	19	34	24	1.96
1832290--1832345	20	2.8	20	91	0	85	35	8	19	35	1.83
1832383--1832463	34	2.4	34	95	0	144	37	16	13	33	1.87
1832383--1832442	13	5.0	13	70	25	51	36	15	15	33	1.88
1832495--1832546	19	2.6	21	87	6	72	34	15	11	38	1.83
1833252--1833375	62	2.0	62	95	0	221	36	14	23	25	1.93
1834860--1834971	51	2.2	51	86	0	152	31	13	25	29	1.94
1834954--1835029	28	2.7	28	89	0	107	26	22	31	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835066--1835133	28	2.4	27	85	9	84	25	13	33	27	1.93
1835119--1835237	51	2.3	52	84	11	165	31	10	26	31	1.91
1835092--1835368	131	2.1	131	81	6	312	32	11	26	30	1.91
1837675--1837748	20	3.7	19	87	7	103	41	13	16	28	1.86
1838447--1838485	20	2.0	20	85	5	53	38	10	10	41	1.73
1838536--1838561	13	2.0	13	100	0	52	30	15	15	38	1.88
1839253--1839316	20	3.1	21	86	8	87	25	32	4	37	1.77
1841117--1841142	13	2.0	13	100	0	52	38	15	15	30	1.88
1843212--1843242	15	2.1	15	93	0	53	12	22	16	48	1.80
1845046--1845090	21	2.1	21	84	8	56	22	20	4	53	1.63
1847308--1847333	13	2.0	13	100	0	52	30	15	15	38	1.88
1850385--1850413	13	2.1	14	93	6	51	6	0	20	72	1.07
1850885--1850937	20	2.7	20	87	0	79	39	15	13	32	1.85
1851821--1852369	28	18.9	28	80	5	531	24	17	29	29	1.97
1851822--1852369	145	3.8	145	85	3	690	24	17	29	29	1.97
1853590--1853657	15	4.2	16	80	9	68	2	4	8	83	0.87
1860490--1860593	44	2.4	43	90	4	165	40	15	5	38	1.71
1860556--1860599	19	2.2	20	92	4	72	34	18	0	47	1.49
1870474--1870610	53	2.6	53	94	1	229	27	16	18	37	1.93
1870580--1870650	20	3.5	20	77	11	74	29	14	16	39	1.88
1872345--1872374	13	2.3	13	100	0	60	40	16	13	30	1.87
1880832--1880910	33	2.4	33	97	0	149	40	12	13	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1880845--1880908	20	3.5	20	70	27	70	40	10	14	34	1.80
1881481--1881558	24	3.5	24	71	16	85	43	11	6	38	1.67
1881497--1881583	19	4.3	19	72	16	75	36	16	3	43	1.64
1881462--1881577	43	2.6	43	91	6	180	40	15	5	38	1.70
1883517--1883556	20	2.0	21	95	5	73	30	17	12	40	1.86
1888040--1888079	3	13.3	3	89	0	62	30	32	0	37	1.58
1889735--1889787	19	2.7	20	82	2	63	35	13	16	33	1.88
1893923--1893970	20	2.4	20	85	0	60	39	18	16	25	1.91
1893979--1894035	19	2.9	19	84	2	69	33	15	14	36	1.88
1900098--1900139	20	2.2	20	87	8	61	28	2	21	47	1.63
1900382--1900422	21	1.9	22	85	5	57	31	19	0	48	1.49
1902164--1902205	22	1.9	22	85	0	57	38	4	33	23	1.76
1902171--1902247	22	3.6	21	85	3	100	38	1	31	28	1.65
1902849--1902905	19	2.9	19	86	2	78	33	15	15	35	1.90
1903455--1903510	21	2.8	21	83	5	80	37	12	14	35	1.84
1903479--1903549	32	2.2	32	89	0	115	33	11	18	36	1.86
1903573--1903639	33	2.0	33	85	0	89	29	16	13	40	1.87
1908299--1908324	13	2.0	13	100	0	52	38	15	15	30	1.88
1908281--1908345	32	2.0	34	90	6	107	44	15	12	27	1.82
1910547--1910596	21	2.3	21	80	10	57	56	4	18	22	1.58
1914503--1914540	13	2.9	13	92	0	58	36	15	15	31	1.90
1917097--1917122	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1917079--1917143	32	2.0	34	87	6	98	44	13	12	29	1.81
1917383--1917413	15	2.1	15	100	0	62	38	6	6	48	1.55
1917901--1917973	34	2.1	35	82	7	87	54	13	15	16	1.71
1918145--1918171	13	2.1	13	100	0	54	37	18	14	29	1.91
1918220--1918283	33	2.0	32	84	3	83	42	14	15	28	1.86
1919092--1919186	20	4.8	20	85	7	122	28	15	12	43	1.84
1919095--1919186	40	2.3	40	92	0	148	29	16	11	42	1.84
1920474--1920498	13	1.9	13	100	0	50	16	36	16	32	1.90
1922184--1922209	13	2.0	13	100	0	52	30	15	15	38	1.88
1922164--1922227	33	2.0	32	87	3	92	26	12	20	40	1.88
1922309--1922333	13	1.9	13	100	0	50	36	16	16	32	1.90
1922343--1922381	20	2.0	19	95	5	69	30	10	23	35	1.88
1924627--1924668	22	2.0	21	86	13	61	40	0	21	38	1.53
1924790--1924827	13	2.9	13	88	0	58	31	21	15	31	1.94
1930883--1930935	20	2.7	20	100	0	106	32	11	22	33	1.90
1930966--1931017	20	2.7	20	90	3	79	26	13	21	38	1.90
1931133--1931171	20	2.0	20	95	5	71	30	10	20	38	1.86
1931627--1931744	51	2.3	51	77	2	130	33	27	8	30	1.87
1931676--1932054	79	4.8	78	80	8	324	29	23	13	34	1.92
1931676--1932052	158	2.4	157	78	7	386	28	23	13	34	1.92
1939672--1940139	61	7.9	59	87	4	574	25	28	20	25	1.99
1940859--1940906	14	3.4	14	91	2	69	81	4	0	14	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940859--1940903	20	2.2	20	88	4	63	82	4	0	13	0.82
1941049--1941090	21	2.0	21	95	0	75	40	9	21	28	1.84
1941077--1941102	13	2.0	13	100	0	52	30	15	15	38	1.88
1943476--1944102	52	11.9	52	68	15	215	29	26	11	32	1.91
1943690--1943861	52	3.3	52	82	4	231	31	24	10	33	1.89
1943644--1943858	103	2.1	104	87	2	308	30	24	10	34	1.89
1943478--1944235	262	2.9	260	91	1	1228	28	27	12	32	1.92
1943690--1944120	51	8.3	50	70	16	180	29	26	11	33	1.91
1944164--1944372	79	2.6	78	76	8	224	27	25	14	33	1.94
1946397--1946425	4	7.2	4	100	0	58	24	0	0	75	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24