genome.fa.s194.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  16  of  24  ( 2800 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2592040--2592103	33	2.0	32	87	9	94	40	17	14	28	1.88
2593967--2594042	38	2.0	37	87	7	109	25	13	14	47	1.80
2594813--2594858	23	1.9	23	82	8	56	43	10	8	36	1.71
2598547--2598670	20	5.7	20	71	17	86	41	12	16	29	1.84
2599809--2599945	66	2.1	64	84	2	175	24	17	28	29	1.97
2599868--2600403	28	18.5	28	81	7	513	23	17	29	29	1.97
2612644--2612669	13	2.0	13	100	0	52	38	15	15	30	1.88
2612694--2612748	20	2.8	20	97	0	101	40	14	7	38	1.74
2616289--2616370	43	1.9	43	87	5	121	31	20	18	29	1.96
2619805--2619846	18	2.3	17	88	12	57	83	16	0	0	0.65
2621053--2621328	30	9.1	30	84	3	327	22	28	17	31	1.96
2621053--2621328	61	4.5	61	85	2	324	22	28	17	31	1.96
2621358--2621615	34	8.0	33	73	13	189	19	30	14	35	1.92
2621427--2621479	27	2.0	27	92	0	88	24	28	16	30	1.97
2621317--2621549	95	2.5	91	81	6	252	19	28	15	36	1.92
2621609--2623836	49	46.9	49	74	10	1680	25	24	17	32	1.96
2621858--2621950	43	2.2	43	84	0	114	29	21	16	33	1.95
2622020--2622169	39	3.6	39	70	15	111	28	26	17	28	1.98
2621962--2622191	87	2.6	87	88	0	316	26	25	17	30	1.97
2622624--2622786	39	3.9	39	75	13	155	27	25	20	26	1.99
2622581--2622837	87	2.9	87	89	0	370	26	24	18	30	1.98
2623238--2623391	39	3.7	39	75	14	146	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2623195--2623448	87	2.9	87	92	0	409	26	25	18	29	1.98
2621609--2623747	614	3.5	614	89	2	3159	25	24	17	32	1.96
2623364--2623747	139	2.7	140	82	6	385	25	24	16	33	1.96
2622440--2623835	240	5.9	234	77	10	1145	25	24	17	32	1.97
2624590--2624643	19	2.7	19	82	5	63	40	11	16	31	1.84
2624689--2624713	13	1.9	13	100	0	50	32	20	16	32	1.94
2624669--2624733	33	2.0	33	87	6	96	30	16	13	38	1.88
2627887--2627955	33	2.1	33	86	5	95	34	18	13	33	1.90
2627909--2627939	13	2.4	13	94	0	53	35	12	16	35	1.87
2628023--2628048	13	2.0	13	100	0	52	38	15	15	30	1.88
2630503--2630538	13	2.8	13	95	0	63	44	16	11	27	1.82
2630526--2630623	20	5.6	20	69	30	98	41	12	18	27	1.86
2630515--2630623	33	3.3	33	100	0	218	42	12	17	27	1.86
2630546--2630604	13	4.0	13	73	26	55	40	13	16	28	1.87
2637237--2637272	13	2.8	13	95	0	63	44	16	11	27	1.82
2637260--2637357	20	5.6	20	69	30	98	41	12	18	27	1.86
2637249--2637357	33	3.3	33	100	0	218	42	12	17	27	1.86
2637280--2637338	13	4.0	13	73	26	55	40	13	16	28	1.87
2643971--2644006	13	2.8	13	95	0	63	44	16	11	27	1.82
2643994--2644091	20	5.6	20	69	30	98	41	12	18	27	1.86
2643983--2644091	33	3.3	33	100	0	218	42	12	17	27	1.86
2644014--2644072	13	4.0	13	73	26	55	40	13	16	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2650219--2650287	33	2.1	32	86	10	95	39	18	10	31	1.84
2650249--2650286	20	1.9	20	88	0	58	42	18	7	31	1.79
2650317--2650388	20	3.7	19	86	3	81	38	15	15	30	1.88
2654890--2654934	23	2.0	23	82	8	56	35	11	20	33	1.88
2660318--2660366	13	4.2	13	70	24	54	36	16	12	34	1.86
2660318--2660387	33	2.1	33	86	7	97	34	18	12	34	1.89
2661067--2661778	157	4.5	156	82	5	763	26	15	18	40	1.89
2661067--2661757	313	2.2	314	83	4	831	25	14	18	41	1.89
2662197--2662237	15	2.6	16	84	7	57	31	7	4	56	1.48
2662761--2662820	26	2.3	27	80	11	70	53	6	11	28	1.62
2663484--2663530	19	2.5	19	96	0	85	46	4	12	36	1.62
2663533--2663560	2	14.0	2	100	0	56	50	0	0	50	1.00
2664428--2664485	16	3.6	16	77	13	73	25	6	22	44	1.77
2664427--2664493	33	2.0	33	100	0	134	23	8	20	46	1.79
2664444--2664493	16	3.0	17	72	16	59	22	10	22	46	1.81
2666229--2666589	198	1.8	196	90	2	580	32	9	14	43	1.77
2667326--2667365	2	20.0	2	100	0	80	50	0	0	50	1.00
2669542--2669692	41	3.6	41	75	6	126	39	9	12	39	1.75
2671981--2672029	13	3.9	13	78	10	66	36	14	16	32	1.89
2671981--2672065	34	2.4	35	86	9	111	36	15	12	35	1.86
2671980--2672066	13	7.2	13	73	19	64	35	14	13	35	1.86
2672091--2672200	52	2.1	52	96	0	202	37	18	16	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2676047--2676250	79	2.6	79	79	1	185	29	16	29	25	1.96
2676208--2676281	28	2.6	28	84	0	85	24	17	32	25	1.97
2676264--2676650	51	7.4	51	74	9	287	32	12	25	29	1.92
2676469--2676544	27	2.8	27	86	6	100	23	21	31	23	1.98
2678991--2679017	13	2.1	13	100	0	54	40	14	14	29	1.86
2679149--2679204	21	2.7	21	97	0	103	35	19	10	33	1.87
2679259--2679370	51	2.2	52	86	1	154	29	16	13	41	1.86
2688243--2688276	2	17.0	2	100	0	68	50	0	0	50	1.00
2688521--2688556	2	19.5	2	83	16	51	55	0	0	44	0.99
2688781--2688832	17	2.8	19	77	16	56	63	0	0	36	0.95
2688776--2688830	18	3.1	18	75	17	53	65	0	0	34	0.93
2688776--2688832	16	3.3	17	81	13	64	64	0	0	35	0.93
2690904--2690998	41	2.3	41	94	0	163	37	6	13	42	1.70
2693057--2693095	12	3.2	12	82	7	51	35	2	15	46	1.60
2693905--2693969	28	2.3	28	86	5	87	26	23	26	24	2.00
2697027--2697094	19	3.9	19	78	21	85	35	11	14	38	1.83
2697029--2697091	32	2.0	32	96	0	117	34	12	15	36	1.86
2697048--2697072	13	1.9	13	100	0	50	36	16	16	32	1.90
2697114--2697180	33	2.0	33	82	0	80	26	13	14	44	1.83
2699519--2699649	51	2.5	53	81	8	169	31	25	10	32	1.90
2699636--2699708	27	2.7	27	86	2	92	23	32	21	21	1.98
2699691--2699861	52	3.3	52	76	10	154	29	26	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2699851--2699920	28	2.5	28	83	4	88	22	31	17	28	1.96
2699526--2699915	212	1.8	212	88	3	606	28	26	13	31	1.94
2701226--2701252	10	2.7	10	100	0	54	62	18	0	18	1.32
2702615--2702647	12	2.8	12	90	4	50	33	9	33	24	1.87
2703270--2703310	21	2.0	20	95	4	73	31	9	24	34	1.88
2705321--2705348	2	14.0	2	100	0	56	50	0	0	50	1.00
2708311--2708356	24	1.9	24	95	0	83	45	28	6	19	1.75
2708361--2708415	28	2.0	28	92	0	92	49	18	10	21	1.78
2710305--2710350	21	2.1	22	84	4	58	21	28	17	32	1.96
2712803--2712842	20	2.0	20	90	0	62	37	5	42	15	1.68
2712895--2712940	24	1.9	24	95	0	83	45	28	6	19	1.75
2712945--2712999	28	2.0	28	92	0	92	47	20	12	20	1.82
2715841--2715873	15	2.1	16	88	5	50	42	0	0	57	0.98
2715840--2715882	16	2.6	17	78	14	54	48	0	0	51	1.00
2715894--2715948	27	2.0	27	85	7	74	47	0	3	49	1.19
2716993--2717017	13	1.9	13	100	0	50	0	8	0	92	0.40
2717571--2717645	28	2.7	27	71	6	69	45	2	0	52	1.15
2719483--2719552	34	2.1	34	89	5	106	38	15	24	21	1.92
2720341--2720737	97	4.1	97	73	7	340	38	11	22	27	1.89
2720382--2720735	193	1.8	194	84	5	484	38	11	21	27	1.88
2723239--2723288	20	2.5	20	83	0	64	30	18	12	40	1.86
2727258--2727402	47	3.1	47	83	4	175	38	15	10	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2730752--2730876	60	2.1	61	90	1	198	39	4	5	50	1.47
2731584--2731650	11	6.4	10	73	10	62	71	7	0	20	1.10
2735755--2735780	13	2.0	13	100	0	52	38	15	15	30	1.88
2737996--2738040	21	2.1	22	88	8	67	55	4	17	22	1.60
2739844--2739874	15	2.1	15	93	0	53	48	16	22	12	1.80
2742715--2742744	12	2.5	12	100	0	60	40	26	16	16	1.90
2743536--2743582	2	23.5	2	100	0	94	0	48	0	51	1.00
2744473--2744515	21	2.0	21	86	4	59	48	0	0	51	1.00
2744543--2744612	20	3.4	21	76	13	65	42	0	0	57	0.99
2744559--2744603	19	2.3	20	88	3	65	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24