genome.fa.s194.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Length:  3945165

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  18  of  24  ( 2800 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3001934--3002090	85	1.8	85	82	5	201	24	15	22	36	1.93
3003494--3003547	20	2.7	20	82	5	74	38	12	18	29	1.88
3004737--3004769	16	2.1	16	100	0	66	39	12	18	30	1.87
3005765--3005832	20	3.4	19	86	8	91	29	16	13	41	1.86
3008125--3008297	51	3.4	51	83	0	202	27	27	14	30	1.95
3008280--3008353	28	2.6	28	86	0	103	24	29	20	25	1.99
3008387--3008461	28	2.7	29	87	4	109	22	32	20	25	1.98
3008446--3008664	51	4.3	51	76	9	205	30	22	11	35	1.90
3008229--3008506	110	2.6	106	80	6	342	26	24	15	32	1.96
3008467--3008659	103	1.9	102	86	5	273	30	21	10	37	1.88
3010808--3010834	4	6.8	4	100	0	54	22	0	0	77	0.76
3017062--3017088	13	2.1	13	100	0	54	29	14	18	37	1.91
3025113--3025144	15	2.1	15	100	0	64	31	18	12	37	1.88
3025371--3025519	31	4.8	31	79	10	162	26	31	15	26	1.96
3025462--3025769	55	5.0	66	77	12	180	22	34	12	30	1.91
3025469--3026113	33	20.6	32	80	11	521	21	31	13	33	1.91
3025469--3026113	60	10.3	63	77	12	458	21	31	13	33	1.91
3025504--3026038	150	3.5	147	84	8	626	21	32	12	33	1.91
3025863--3025947	27	2.9	27	82	12	89	21	32	15	30	1.94
3026152--3026720	101	6.0	91	84	7	499	24	24	18	31	1.97
3026337--3026823	52	9.6	50	79	7	453	23	25	17	33	1.96
3026335--3026725	101	3.9	101	89	2	561	22	25	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3026335--3026823	153	3.2	152	79	7	465	23	25	17	33	1.96
3026244--3026725	202	2.5	197	84	7	608	23	25	18	32	1.97
3027591--3027615	13	1.9	13	100	0	50	32	16	20	32	1.94
3027571--3027635	33	2.0	33	87	6	96	30	15	15	38	1.88
3034838--3034866	12	2.3	13	94	5	51	82	0	13	3	0.79
3035621--3035652	15	2.1	15	100	0	64	31	18	12	37	1.88
3035884--3036061	31	5.7	31	77	9	139	24	30	15	29	1.95
3035977--3036585	33	19.4	32	77	11	432	21	31	12	34	1.90
3036034--3036305	88	3.1	86	80	11	300	22	32	12	32	1.92
3035977--3036597	100	6.6	98	78	14	449	21	31	12	34	1.91
3036713--3036957	39	5.8	39	70	16	166	26	25	20	28	1.99
3036660--3037416	101	8.0	87	80	11	544	24	24	18	32	1.97
3036930--3037519	101	5.8	101	87	2	754	24	24	17	33	1.96
3036935--3037523	52	11.6	52	77	7	537	23	25	17	33	1.96
3038208--3038268	19	3.5	19	70	25	71	34	11	18	36	1.86
3038208--3038275	32	2.1	32	97	0	127	33	11	17	36	1.86
3043114--3043163	21	2.4	22	80	9	61	30	20	0	50	1.49
3045501--3045527	13	2.1	13	100	0	54	29	14	14	40	1.86
3045508--3045547	20	2.0	21	95	5	73	37	12	15	35	1.85
3049054--3049090	5	7.6	5	93	6	67	40	0	0	59	0.97
3049734--3049777	17	2.4	18	81	11	54	61	0	9	29	1.27
3051463--3051504	19	2.3	19	87	4	59	59	2	2	35	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3053386--3053427	21	2.0	20	90	4	66	45	0	0	54	0.99
3056440--3056688	51	4.8	52	77	2	153	26	18	21	33	1.96
3056470--3056611	51	2.8	51	83	1	167	23	19	23	33	1.97
3056479--3056657	51	3.5	50	79	6	162	26	18	22	32	1.97
3075126--3075163	13	2.9	13	96	0	67	34	15	13	36	1.87
3076581--3076643	28	2.2	29	86	8	85	58	3	1	36	1.23
3076581--3076643	13	4.4	14	78	13	58	58	3	1	36	1.23
3076835--3076880	17	2.7	17	78	18	51	41	0	4	54	1.20
3082828--3082860	2	17.0	2	93	6	59	51	0	0	48	1.00
3083925--3083949	11	2.3	11	100	0	50	32	8	0	60	1.26
3092148--3092230	38	2.2	38	91	0	139	39	13	21	25	1.90
3096580--3096634	20	2.7	21	85	5	76	30	16	12	40	1.86
3096580--3096653	21	3.6	20	85	7	78	31	17	12	39	1.86
3097466--3097514	20	2.5	20	86	0	62	30	12	18	38	1.87
3098253--3098306	20	2.7	21	85	8	76	35	18	12	33	1.89
3098335--3098390	19	2.9	19	89	2	76	35	16	16	32	1.90
3098375--3098401	13	2.1	13	100	0	54	40	14	14	29	1.86
3100225--3100393	79	2.1	79	83	2	205	33	13	24	28	1.93
3100352--3100422	28	2.5	28	88	4	99	30	19	28	21	1.97
3100349--3100609	107	2.4	109	86	5	368	34	17	25	22	1.96
3100456--3100531	28	2.7	28	89	0	107	28	22	30	18	1.97
3100349--3100617	109	2.5	106	87	3	369	34	17	25	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3100550--3100734	76	2.4	76	92	0	316	32	14	25	27	1.95
3103098--3103123	13	2.0	13	100	0	52	38	15	15	30	1.88
3103110--3103151	21	2.0	21	95	0	75	28	21	9	40	1.84
3103168--3103283	13	7.5	13	70	29	70	35	18	12	33	1.89
3103176--3103325	19	8.8	18	70	27	114	34	17	12	35	1.88
3103168--3103304	32	4.3	32	99	0	265	35	18	12	34	1.88
3103271--3103332	19	3.2	19	76	13	63	29	14	14	41	1.85
3104142--3104205	33	2.0	32	84	3	83	34	14	12	39	1.83
3111503--3111560	13	4.0	13	74	23	53	34	15	15	34	1.89
3111632--3111748	52	2.2	52	93	0	198	36	17	15	29	1.91
3119080--3119117	13	2.9	13	92	0	58	36	15	10	36	1.82
3120541--3120603	28	2.2	29	86	8	85	58	3	1	36	1.23
3120541--3120603	13	4.4	14	78	13	58	58	3	1	36	1.23
3120795--3120840	17	2.7	17	78	18	51	41	0	4	54	1.20
3129192--3129247	21	2.8	21	78	5	71	39	12	14	33	1.83
3136127--3136207	38	2.2	36	86	4	117	39	13	22	24	1.90
3138207--3138232	13	2.0	13	100	0	52	30	15	15	38	1.88
3138187--3138250	32	2.0	33	84	3	85	29	14	15	40	1.86
3138855--3138931	38	2.1	38	82	7	95	32	24	7	35	1.84
3138936--3138979	21	2.1	21	83	8	54	25	31	4	38	1.76
3140784--3140809	13	2.0	13	100	0	52	38	15	15	30	1.88
3146963--3147014	19	2.7	20	84	6	70	28	13	17	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3146963--3147020	19	3.0	18	80	12	62	25	12	20	41	1.87
3151349--3151397	20	2.5	20	86	0	62	30	12	18	38	1.87
3152136--3152189	20	2.7	21	85	8	76	35	18	12	33	1.89
3152218--3152272	19	2.8	20	83	5	67	36	18	14	30	1.91
3154091--3154259	79	2.1	79	83	4	207	33	14	23	28	1.94
3154218--3154288	28	2.5	28	90	4	108	30	21	26	21	1.98
3154217--3154476	107	2.4	110	85	5	368	34	17	24	23	1.96
3154324--3154397	28	2.6	28	86	0	94	29	21	29	18	1.97
3154217--3154484	110	2.5	106	86	4	367	35	16	24	23	1.95
3154417--3154600	75	2.4	76	91	1	307	33	15	23	27	1.95
3156968--3156993	13	2.0	13	100	0	52	38	15	15	30	1.88
3157025--3157119	19	5.7	18	70	27	75	35	15	12	35	1.86
3157017--3157121	32	3.3	32	93	0	183	35	16	12	36	1.86
3157044--3157068	13	1.9	13	100	0	50	32	8	16	44	1.76
3157076--3157100	13	1.9	13	100	0	50	32	16	16	36	1.90
3163783--3163835	20	2.7	20	91	2	90	39	16	11	32	1.85
3165730--3165787	13	4.0	13	74	23	53	34	15	15	34	1.89
3174702--3174764	28	2.2	29	86	8	85	58	3	1	36	1.23
3174702--3174764	13	4.4	14	78	13	58	58	3	1	36	1.23
3174956--3175001	17	2.7	17	78	18	51	41	0	4	54	1.20
3180603--3180628	13	2.0	13	100	0	52	30	15	15	38	1.88
3180667--3180742	21	3.7	21	80	3	100	28	17	11	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3180688--3180760	20	3.6	20	81	3	101	31	19	13	35	1.91
3180667--3180760	41	2.3	41	98	0	179	29	18	12	39	1.88
3183214--3183252	13	3.0	13	96	0	69	35	15	17	30	1.91
3183238--3183276	20	2.0	20	94	0	69	51	10	15	23	1.73
3185328--3185358	15	2.1	15	93	0	53	12	22	16	48	1.80
3189473--3189548	21	3.7	21	80	3	100	28	17	11	42	1.84
3189494--3189566	20	3.6	20	81	3	101	31	19	13	35	1.91
3189473--3189566	41	2.3	41	98	0	179	29	18	12	39	1.88
3196292--3196410	50	2.4	50	100	0	238	31	4	15	47	1.65
3201369--3201477	52	2.1	51	84	5	139	42	11	14	31	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24