genome.fa.s20.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold20
Parameters: 2 7 7 80 10 50 1000
Length:  3599867

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  14  of  25  ( 2919 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1966574--1966653	1	80.0	1	72	0	61	86	13	0	0	0.58
1966568--1966653	15	5.9	14	79	15	86	84	15	0	0	0.61
1966578--1966653	13	5.5	13	79	14	73	85	14	0	0	0.60
1966566--1966653	30	3.0	30	87	11	128	84	15	0	0	0.63
1966566--1966653	28	3.0	29	90	8	126	84	15	0	0	0.63
1967924--1968029	31	3.5	30	83	7	133	25	28	14	32	1.94
1967924--1968041	31	3.9	30	82	6	112	25	27	15	31	1.95
1968049--1968162	27	4.2	27	90	2	149	21	34	14	29	1.93
1968189--1968658	48	10.0	48	75	12	411	24	25	18	31	1.98
1968330--1968609	43	6.1	43	75	14	218	23	24	19	32	1.98
1968185--1968646	91	5.0	95	81	9	406	24	25	18	30	1.98
1968281--1968646	143	2.6	140	85	3	500	24	24	19	31	1.98
1968188--1968765	234	2.4	238	84	5	704	24	25	17	32	1.97
1968534--1968707	49	3.5	49	81	3	197	24	24	18	32	1.97
1968534--1968756	52	4.4	50	77	6	191	24	25	17	32	1.97
1969425--1969478	21	2.7	19	80	5	63	35	12	18	33	1.89
1969466--1969490	13	1.9	13	100	0	50	36	16	16	32	1.90
1969447--1969525	32	2.5	32	89	2	115	31	15	21	31	1.94
1971068--1971144	39	2.0	39	86	0	109	28	24	20	25	1.99
1971018--1971345	95	3.5	95	85	6	411	24	25	19	31	1.98
1971251--1972071	91	9.0	91	91	0	1268	25	26	18	30	1.98
1972941--1972968	13	2.2	13	100	0	56	28	14	17	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1972921--1972985	33	2.0	33	87	6	96	30	16	13	38	1.88
1976648--1976783	50	2.7	49	90	4	209	27	17	13	41	1.86
1979180--1979596	79	5.2	78	74	9	349	29	26	13	30	1.94
1979957--1979991	17	2.1	17	100	0	70	11	17	0	71	1.14
1979962--1980005	17	2.5	17	85	7	52	15	20	0	63	1.31
1988701--1988756	27	2.0	29	86	6	80	28	21	12	37	1.90
1988728--1988854	51	2.6	49	81	9	141	29	23	11	35	1.90
1988776--1988924	80	1.9	80	87	2	219	27	27	14	30	1.95
1988667--1989111	131	3.4	128	86	5	576	28	24	12	34	1.91
1988857--1988975	51	2.3	52	81	2	134	28	27	12	31	1.93
1988986--1989102	51	2.3	49	89	5	180	29	25	12	32	1.93
1989084--1989160	28	2.8	28	86	7	104	25	32	16	24	1.96
1989144--1989259	51	2.3	51	84	0	142	29	28	12	29	1.94
2001735--2001840	1	106.0	1	75	0	86	86	7	2	2	0.75
2001735--2001840	9	11.8	9	82	9	101	86	7	2	2	0.75
2001735--2001839	24	4.3	23	79	17	99	86	7	2	2	0.76
2001735--2001840	26	4.2	24	81	12	108	86	7	2	2	0.75
2001735--2001840	23	4.3	24	79	7	106	86	7	2	2	0.75
2001735--2001840	25	4.3	23	79	13	106	86	7	2	2	0.75
2002693--2003039	116	2.9	118	88	5	472	25	26	19	27	1.99
2002693--2003039	61	5.8	60	87	6	474	25	26	19	27	1.99
2003083--2003319	89	2.7	89	89	2	343	19	24	10	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2003083--2003325	46	5.5	43	76	11	224	19	25	10	45	1.81
2006472--2006587	51	2.3	51	81	3	144	31	25	11	32	1.91
2006412--2006875	130	3.6	129	85	3	585	29	24	11	34	1.91
2006603--2006718	51	2.3	51	86	0	160	28	26	12	32	1.92
2006734--2006847	51	2.2	52	89	4	178	31	25	9	33	1.88
2006830--2006884	28	2.0	28	96	0	101	27	30	12	29	1.93
2006830--2006904	28	2.7	27	87	8	98	26	30	16	26	1.96
2006890--2007007	50	2.3	51	82	1	139	27	27	13	30	1.94
2006734--2007034	157	1.9	157	82	7	378	28	26	12	32	1.93
2013354--2013379	13	2.0	13	100	0	52	38	15	15	30	1.88
2018553--2018583	15	2.1	15	93	0	53	48	16	22	12	1.80
2020654--2020692	13	3.0	13	100	0	78	30	15	15	38	1.88
2020813--2020858	21	2.2	20	81	11	58	32	19	4	43	1.71
2022499--2022539	20	2.0	20	100	0	82	34	4	34	26	1.78
2023248--2023273	13	2.0	13	100	0	52	38	15	15	30	1.88
2025137--2025182	14	3.4	13	82	11	56	86	6	4	2	0.75
2026516--2026545	11	2.7	11	100	0	60	0	10	33	56	1.32
2026636--2026690	20	2.7	21	86	11	78	30	20	12	36	1.90
2026720--2026778	19	3.0	20	80	7	75	30	18	18	32	1.95
2027351--2027424	36	2.0	37	94	2	132	35	31	2	31	1.72
2027540--2027590	21	2.2	24	76	23	72	49	21	3	25	1.67
2027547--2027589	21	2.0	21	100	0	86	48	18	4	27	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2029301--2029329	13	2.2	13	100	0	58	41	17	13	27	1.87
2031982--2032053	28	2.6	28	88	0	99	23	19	34	22	1.96
2032042--2032315	52	5.3	52	79	7	288	33	11	25	29	1.91
2032043--2032315	104	2.6	105	90	2	417	34	11	24	29	1.91
2032298--2032400	27	3.8	27	92	3	154	21	20	33	24	1.97
2032384--2032515	51	2.5	51	78	13	133	31	9	26	32	1.89
2034864--2034889	13	2.0	13	100	0	52	38	15	15	30	1.88
2034843--2034909	33	2.0	33	88	0	98	43	16	14	25	1.86
2034929--2034996	19	3.9	18	76	23	83	38	14	11	35	1.83
2034951--2034975	13	1.9	13	100	0	50	32	16	16	36	1.90
2034932--2034994	32	2.0	32	96	0	117	36	15	12	34	1.86
2035052--2035108	21	2.7	21	97	0	105	36	19	10	33	1.86
2035726--2036872	55	20.3	55	84	8	1412	26	20	25	27	1.99
2036031--2036171	27	5.1	27	58	3	66	28	21	23	26	1.99
2036257--2036342	27	3.1	27	60	3	64	29	22	23	25	1.99
2036427--2036512	27	3.1	27	60	3	64	29	22	23	25	1.99
2035725--2036872	170	6.7	171	91	4	1806	26	20	25	27	1.99
2036583--2036666	27	3.1	27	62	3	69	28	23	21	26	1.99
2035725--2036872	339	3.4	341	92	3	1811	26	20	25	27	1.99
2036610--2036697	28	3.2	28	60	3	70	20	20	26	32	1.97
2037855--2037908	1	54.0	1	81	0	63	0	3	5	90	0.53
2050478--2050549	28	2.6	28	88	0	99	23	19	34	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2050538--2050811	52	5.3	52	79	7	288	33	11	25	29	1.91
2050539--2050811	104	2.6	105	90	2	417	34	11	24	29	1.91
2050794--2050896	27	3.8	27	92	3	154	21	20	33	24	1.97
2050880--2051011	51	2.5	51	78	13	133	31	9	26	32	1.89
2053360--2053385	13	2.0	13	100	0	52	38	15	15	30	1.88
2053339--2053405	33	2.0	33	88	0	98	43	16	14	25	1.86
2053425--2053492	19	3.9	18	76	23	83	38	14	11	35	1.83
2053447--2053471	13	1.9	13	100	0	50	32	16	16	36	1.90
2053428--2053490	32	2.0	32	96	0	117	36	15	12	34	1.86
2053548--2053604	21	2.7	21	97	0	105	36	19	10	33	1.86
2058463--2058517	20	2.7	21	88	11	87	30	21	12	34	1.91
2058546--2058593	20	2.5	20	89	3	71	31	16	18	33	1.94
2059205--2059643	61	7.3	60	80	4	456	28	25	18	28	1.98
2059199--2059643	181	2.5	182	82	5	530	27	25	18	28	1.98
2059205--2059643	120	3.7	119	80	4	472	28	25	18	28	1.98
2059649--2059766	43	2.7	43	82	12	136	22	21	10	46	1.80
2059649--2059811	85	1.9	86	86	7	233	20	20	12	46	1.82
2059633--2059813	42	4.3	42	76	8	163	23	19	14	42	1.88
2059741--2059920	72	2.5	71	80	8	209	18	22	16	42	1.89
2059783--2059919	34	3.9	32	75	14	105	18	23	18	40	1.91
2060562--2060626	27	2.4	27	76	10	69	67	6	3	23	1.27
2060521--2060630	22	5.0	22	64	18	59	69	3	1	25	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2064952--2065008	26	2.2	26	100	0	114	38	24	22	14	1.91
2066523--2066567	19	2.1	22	84	15	60	33	22	0	44	1.53
2074769--2075584	42	19.3	42	78	4	734	12	31	19	35	1.90
2074771--2075584	212	3.8	212	80	5	860	13	31	19	35	1.90
2075881--2075934	11	4.7	12	73	15	51	72	0	0	27	0.85
2079615--2079746	50	2.6	50	84	4	169	25	16	15	41	1.88
2082130--2082378	79	3.2	79	82	6	247	28	25	13	32	1.94
2082237--2082508	130	2.1	130	82	5	318	29	26	11	32	1.91
2082366--2082634	79	3.4	79	76	7	267	28	24	11	34	1.91
2082155--2082537	209	1.8	209	83	4	504	28	25	12	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25