genome.fa.s20.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold20
Parameters: 2 7 7 80 10 50 1000
Length:  3599867

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  3  of  25  ( 2919 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310128--310348	79	2.8	79	78	9	245	33	15	24	26	1.95
310456--310579	50	2.5	50	85	4	151	41	15	19	23	1.89
312867--312985	50	2.4	50	88	2	168	42	13	16	27	1.86
313614--314194	62	9.7	61	82	6	672	26	19	27	26	1.99
313614--314150	122	4.4	122	85	5	644	26	19	27	25	1.99
313699--314190	177	2.7	177	88	3	698	27	19	27	25	1.99
315300--315359	8	7.4	8	80	10	59	3	3	6	86	0.77
315297--315358	31	1.9	32	87	6	90	3	4	6	85	0.82
315305--315359	16	3.3	17	85	9	69	3	1	7	87	0.73
315301--315352	26	2.0	27	92	3	88	1	3	7	86	0.76
315300--315360	26	2.5	25	78	17	65	4	3	6	85	0.83
327061--327118	28	2.0	28	83	6	71	34	17	25	22	1.96
327030--327390	79	4.6	78	76	7	309	34	16	23	25	1.95
330957--330986	13	2.3	13	94	0	51	43	13	13	30	1.82
335245--335282	20	1.9	20	88	0	58	42	10	15	31	1.81
339819--339870	20	2.7	20	85	8	72	28	13	17	40	1.87
339912--339964	20	2.6	21	76	8	56	28	15	16	39	1.89
339952--339976	13	1.9	13	100	0	50	36	16	16	32	1.90
340536--340577	22	1.9	22	90	9	68	38	28	2	30	1.70
342633--342663	8	3.8	8	95	4	53	61	25	0	12	1.32
348596--348621	13	2.0	13	100	0	52	38	15	15	30	1.88
348574--348641	33	2.1	32	91	8	111	32	16	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349759--350271	155	3.3	154	79	5	464	38	18	17	25	1.92
349760--350271	156	3.3	154	79	5	437	38	18	17	25	1.92
356664--356726	32	2.0	32	84	6	83	30	17	14	38	1.89
361874--361912	13	3.0	13	96	0	69	35	15	17	30	1.91
363976--364016	15	2.7	15	84	3	55	17	19	17	46	1.85
368089--368113	13	1.9	13	100	0	50	36	16	16	32	1.90
368066--368133	33	2.1	33	88	2	102	32	14	17	35	1.91
372811--372876	33	2.0	33	91	5	107	25	18	15	40	1.89
376628--376797	79	2.2	79	82	8	195	25	28	14	30	1.95
381093--381696	85	7.1	84	73	10	347	21	30	14	33	1.93
381098--381696	255	2.3	255	77	5	566	21	31	14	33	1.93
382709--382944	127	1.9	126	83	6	307	31	10	9	48	1.69
383324--383359	17	2.2	17	90	5	56	72	0	16	11	1.12
384366--384742	164	2.3	160	81	6	431	36	11	12	39	1.80
385154--385716	156	3.6	154	75	8	484	23	17	19	38	1.93
390539--390593	19	2.8	20	74	15	53	74	5	14	5	1.18
391840--392170	90	3.7	90	83	1	385	29	26	17	26	1.98
392403--392539	35	3.9	35	85	1	186	26	22	7	43	1.79
395015--395040	13	2.0	13	100	0	52	30	15	15	38	1.88
395079--395154	21	3.7	21	82	3	109	28	18	11	40	1.86
395099--395172	20	3.7	20	81	3	103	31	20	13	35	1.91
395079--395172	41	2.3	41	100	0	188	29	19	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397624--397675	13	4.0	13	94	0	86	36	13	17	32	1.89
397661--397739	20	3.7	20	75	18	70	45	15	13	25	1.83
401590--401634	21	2.1	21	84	8	56	22	20	4	53	1.63
403881--403956	21	3.7	21	82	3	109	28	18	11	40	1.86
403901--403974	20	3.7	20	81	3	103	31	20	13	35	1.91
403881--403974	41	2.3	41	100	0	188	29	19	12	38	1.89
415143--415291	52	2.9	51	90	3	235	30	18	18	33	1.94
416194--416353	39	3.9	39	68	15	106	28	21	24	25	1.99
416194--416406	87	2.4	88	85	2	277	27	20	23	27	1.99
416242--416543	138	2.2	136	85	2	401	29	19	24	26	1.98
416369--416544	87	2.0	89	85	2	239	30	18	23	27	1.98
416566--416683	29	4.2	27	78	8	94	17	16	35	30	1.92
416566--416660	29	3.3	30	79	10	108	15	16	33	33	1.91
416566--416683	56	2.1	57	80	4	132	17	16	35	30	1.92
416607--416693	27	3.1	27	85	3	93	22	17	35	24	1.95
416661--416789	34	3.8	34	88	3	170	34	12	33	20	1.90
416694--416760	35	2.1	28	82	17	71	37	8	32	20	1.84
416661--416774	34	3.4	34	91	3	176	36	10	33	19	1.86
418238--418393	1	156.0	1	72	0	123	0	4	8	86	0.69
418240--418392	13	10.9	13	79	14	162	0	4	9	86	0.70
418229--418393	41	4.2	39	79	9	154	0	4	9	86	0.71
418240--418393	58	2.7	55	89	7	238	0	4	9	86	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418231--418393	59	2.8	59	89	8	253	0	4	9	85	0.71
418240--418395	54	2.8	53	84	12	206	0	4	9	85	0.71
432263--432373	52	2.2	51	86	4	152	30	18	18	32	1.95
432362--432386	13	1.9	13	100	0	50	36	16	16	32	1.90
432434--432502	33	2.1	33	89	2	104	36	17	11	34	1.86
437892--437953	10	6.0	10	78	10	54	82	12	1	3	0.87
437909--437939	4	7.8	4	92	0	53	80	19	0	0	0.71
437893--437939	12	3.8	12	83	10	60	82	14	2	0	0.75
439164--439656	28	17.5	28	84	6	622	28	31	17	22	1.97
439164--439656	85	5.8	84	83	6	602	28	31	17	22	1.97
443340--443903	47	12.0	46	74	12	281	23	23	16	37	1.94
443340--443671	141	2.4	141	82	5	395	23	22	15	37	1.93
443405--443882	188	2.5	187	84	4	604	23	23	16	37	1.94
443406--443886	94	5.1	92	75	11	390	23	23	16	37	1.93
444005--444196	86	2.2	86	83	0	233	17	30	14	37	1.89
444620--444644	13	1.9	13	100	0	50	32	16	16	36	1.90
444633--444781	52	2.9	51	87	4	217	33	17	17	31	1.93
448973--449468	164	3.0	160	79	8	471	30	11	8	50	1.68
449008--449471	166	2.8	161	81	6	479	29	10	9	51	1.67
448972--449547	164	3.5	165	79	8	421	30	10	8	50	1.67
449871--449921	11	4.7	11	73	4	50	78	1	17	1	0.94
450579--450603	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450669--450693	13	1.9	13	100	0	50	32	16	16	36	1.90
450702--450822	52	2.3	52	97	0	224	34	18	18	28	1.94
457775--457799	1	25.0	1	100	0	50	100	0	0	0	0.00
458040--458070	16	1.9	16	93	0	53	87	6	6	0	0.68
459101--459152	27	1.9	27	96	0	95	23	38	17	21	1.93
459131--459739	35	17.8	35	81	10	663	20	33	12	33	1.90
459034--459740	70	10.4	70	84	8	862	20	33	12	33	1.90
459439--459490	27	1.9	27	96	0	95	23	38	17	21	1.93
459041--459740	338	2.1	338	98	0	1355	20	33	12	33	1.90
459131--459789	106	6.4	102	80	12	489	21	34	12	32	1.90
459742--459850	32	3.4	32	87	9	161	27	37	17	17	1.92
459746--459843	33	3.0	33	92	7	164	27	36	18	17	1.93
459843--460610	49	15.8	49	83	7	926	25	25	17	32	1.97
460462--461493	55	18.7	55	67	18	327	24	24	14	36	1.93
460462--461504	170	6.3	164	76	16	1019	24	24	14	35	1.93
460730--460849	60	2.0	61	85	1	161	24	24	13	38	1.91
461026--461203	49	3.7	48	83	11	231	25	23	17	32	1.97
461075--461160	43	2.0	43	95	0	154	26	24	19	29	1.99
460367--461710	656	2.0	656	99	0	2643	24	25	15	35	1.94
461386--461505	60	2.0	61	85	1	161	24	24	13	38	1.91
462323--462347	13	1.9	13	100	0	50	36	16	16	32	1.90
462413--462437	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462446--462566	52	2.3	52	97	0	224	34	18	18	28	1.94
466221--466258	11	3.5	11	80	20	53	55	7	0	36	1.29
466220--466262	21	2.0	21	100	0	86	58	9	0	32	1.30
467391--467444	20	2.7	20	88	2	72	38	9	16	35	1.81
467492--467543	20	2.6	20	87	0	68	38	15	13	32	1.86
468301--468353	19	2.7	20	85	8	72	28	13	15	43	1.84
469054--469097	21	2.1	21	83	8	54	25	31	4	38	1.76
470889--470926	13	2.9	13	96	0	67	31	15	18	34	1.92
476273--476610	156	2.2	157	82	7	402	24	20	20	34	1.96
476273--476660	156	2.5	156	80	7	394	24	19	21	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25