genome.fa.s20.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold20
Parameters: 2 7 7 80 10 50 1000
Length:  3599867

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  7  of  25  ( 2919 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927953--927986	16	2.1	16	88	0	50	2	2	8	85	0.80
934850--934979	52	2.5	52	91	3	201	33	16	17	33	1.92
934850--934999	52	2.9	52	85	4	162	34	16	18	32	1.92
934988--935012	13	1.9	13	100	0	50	36	16	16	32	1.90
935075--935099	13	1.9	13	100	0	50	32	16	16	36	1.90
935317--935360	10	4.6	10	88	11	74	47	9	11	31	1.71
935317--935360	18	2.3	19	92	7	72	47	9	11	31	1.71
935863--935896	17	1.9	17	88	5	50	50	11	0	38	1.39
936254--936306	22	2.4	22	87	0	70	32	1	3	62	1.24
936275--936319	22	2.0	22	82	0	54	33	6	2	57	1.37
936428--936462	14	2.5	14	86	13	54	34	8	2	54	1.46
938779--938827	23	2.1	23	85	7	64	48	2	6	42	1.39
939681--939961	106	2.7	103	79	8	289	45	3	4	46	1.42
943719--943759	21	2.0	20	95	4	73	39	0	0	60	0.96
943805--943856	15	3.6	14	79	10	52	48	1	3	46	1.31
945564--945624	10	6.3	10	75	7	54	24	3	0	72	1.00
945599--945671	36	1.9	39	86	8	107	24	0	6	68	1.14
945634--945676	22	1.9	22	85	4	59	25	0	11	62	1.29
945642--945694	22	2.4	21	78	9	61	26	0	7	66	1.18
950884--951104	109	2.0	109	100	0	442	34	15	19	29	1.93
951904--951944	12	3.5	12	78	18	50	17	0	2	80	0.82
952828--952897	21	3.2	21	76	11	68	7	17	35	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952887--952978	31	3.0	30	85	6	121	23	18	39	18	1.92
953070--953278	72	2.9	72	82	1	240	17	18	36	28	1.93
953429--953639	107	2.0	105	89	3	325	9	28	11	49	1.71
953910--953967	21	2.7	21	75	17	57	17	5	8	68	1.33
953972--954037	25	2.6	24	81	11	78	16	1	6	75	1.07
953936--954037	34	3.0	31	82	13	114	15	2	5	75	1.12
953941--954037	17	5.8	16	71	21	65	15	3	6	75	1.13
953972--954055	43	2.0	43	81	9	100	20	1	5	72	1.12
954557--954809	42	6.1	42	81	7	275	37	17	30	13	1.89
954576--954809	83	2.8	84	86	1	328	37	17	30	13	1.89
954560--954808	125	2.0	125	87	3	358	38	17	30	13	1.89
966898--966973	20	3.8	19	77	6	80	39	11	13	35	1.81
966895--966973	40	2.0	39	87	2	113	39	12	12	35	1.81
967344--967415	22	3.2	23	80	11	78	75	9	9	5	1.20
968681--969464	27	28.6	28	79	8	365	27	29	14	28	1.95
968677--969203	109	4.8	107	75	10	388	25	29	13	30	1.94
969188--970608	28	50.6	28	83	3	1637	29	29	17	23	1.97
970598--970737	63	2.2	64	85	1	183	32	27	18	20	1.96
970598--970765	32	5.3	32	83	1	185	30	27	19	22	1.98
970622--970828	64	3.3	64	79	9	194	29	27	21	21	1.99
979997--980352	179	2.0	179	89	0	541	32	18	16	32	1.93
981419--982095	89	7.6	89	80	5	683	29	16	15	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981399--982095	178	3.9	178	84	2	853	29	16	14	38	1.89
981399--982095	267	2.6	268	81	6	840	29	16	14	38	1.89
982490--982544	15	3.7	15	80	0	56	7	20	23	49	1.74
985296--985321	13	2.0	13	100	0	52	38	15	15	30	1.88
985391--985417	13	2.1	13	100	0	54	40	14	14	29	1.86
985960--986040	34	2.4	34	91	0	135	30	27	2	39	1.70
987936--987998	20	3.5	20	70	28	68	41	12	14	31	1.83
987954--987979	13	2.0	13	100	0	52	38	15	15	30	1.88
987936--987998	33	1.9	33	96	0	117	41	12	14	31	1.83
990883--990907	12	2.1	12	100	0	50	44	32	8	16	1.76
994117--994185	33	2.1	32	84	10	86	36	18	13	31	1.89
994214--994273	20	3.0	20	79	13	70	35	15	11	38	1.83
994746--994797	17	3.2	17	78	21	58	78	11	0	9	0.95
995901--995958	22	2.6	22	83	2	71	46	5	3	44	1.42
996410--996456	21	2.3	21	89	7	71	76	0	4	19	0.95
998237--998274	17	2.2	18	86	9	53	10	10	15	63	1.52
1004232--1004262	13	2.4	13	94	0	53	35	12	12	38	1.82
1004216--1004284	33	2.1	33	89	5	104	31	11	18	37	1.87
1012834--1012888	21	2.7	20	81	10	67	34	12	16	36	1.87
1014739--1014797	20	2.8	20	87	5	82	37	13	11	37	1.82
1014818--1014868	20	2.5	20	93	0	93	35	13	9	41	1.78
1018506--1018565	29	2.1	29	90	6	95	41	20	10	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1018600--1019313	58	12.3	58	76	8	537	47	11	10	29	1.74
1018734--1018828	29	3.3	29	67	11	77	49	9	8	32	1.65
1018600--1019298	115	6.0	116	76	7	573	48	11	10	29	1.74
1018635--1019272	232	2.8	230	79	5	685	47	12	10	29	1.74
1018976--1019237	29	9.1	30	63	21	103	49	12	9	27	1.72
1018698--1019313	174	3.6	173	78	7	592	48	11	10	29	1.74
1022605--1022641	10	3.9	9	86	13	56	8	16	0	75	1.02
1022635--1022673	9	4.6	8	81	12	51	2	17	2	76	1.01
1022635--1022673	17	2.3	17	86	8	53	2	17	2	76	1.01
1023296--1023618	167	1.9	167	82	8	406	54	8	11	26	1.64
1024309--1024694	58	6.7	58	81	2	382	49	12	10	27	1.73
1024310--1024694	116	3.3	115	84	3	459	49	12	10	27	1.73
1024309--1024707	174	2.3	172	83	3	476	49	12	11	27	1.73
1028871--1028928	18	3.1	18	78	9	55	3	17	1	77	0.99
1029738--1029822	22	3.6	22	75	20	82	50	4	8	36	1.53
1034057--1034105	20	2.5	20	86	0	62	30	12	16	40	1.85
1033978--1034171	80	2.4	80	95	0	343	31	14	15	37	1.89
1034017--1034145	40	3.2	39	67	20	104	31	15	16	37	1.90
1041322--1041459	30	4.5	30	71	16	111	24	28	15	31	1.95
1041339--1041555	65	3.2	64	75	15	174	23	28	11	37	1.89
1041470--1042143	33	20.8	33	72	10	417	21	27	10	39	1.87
1041386--1042143	67	11.6	67	72	12	463	21	27	11	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041851--1042068	93	2.3	93	82	4	242	19	30	11	38	1.88
1043360--1043417	13	4.0	13	72	23	53	34	18	12	34	1.88
1043373--1043436	19	3.7	19	72	23	77	31	20	10	37	1.87
1043363--1043437	32	2.3	32	97	0	141	33	20	10	36	1.87
1043437--1043485	23	2.1	23	100	0	98	32	16	24	26	1.96
1043529--1043553	13	1.9	13	100	0	50	36	16	16	32	1.90
1043512--1043574	33	1.9	32	87	3	90	30	15	20	33	1.94
1044100--1044153	16	3.1	17	82	17	67	29	31	0	38	1.57
1044125--1044162	19	2.0	19	94	0	67	31	28	0	39	1.57
1044115--1044167	19	2.6	20	79	11	63	24	35	0	39	1.56
1052192--1052216	13	1.9	13	100	0	50	36	16	16	32	1.90
1052175--1052237	33	1.9	32	87	3	90	30	15	20	33	1.94
1053072--1053096	13	1.9	13	100	0	50	32	16	16	36	1.90
1053177--1053229	20	2.6	21	90	3	81	35	13	15	35	1.86
1058005--1058170	20	7.8	20	73	14	116	40	13	13	31	1.83
1057956--1058181	91	2.5	91	90	1	355	41	14	14	30	1.85
1058719--1058750	3	10.7	3	93	0	55	37	0	31	31	1.58
1063210--1063260	26	2.0	26	84	0	66	37	17	13	31	1.89
1065151--1065204	20	2.7	20	88	11	76	35	18	14	31	1.91
1075968--1076019	17	3.1	17	78	8	54	17	21	11	50	1.77
1076063--1076102	14	2.9	14	96	0	71	25	25	7	42	1.80
1075995--1076187	98	2.0	98	91	4	320	21	21	11	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1083960--1084159	90	2.2	91	85	3	269	43	12	12	33	1.79
1084089--1084168	40	2.0	40	85	0	106	42	8	10	38	1.69
1084812--1085040	53	4.4	52	80	6	203	37	15	20	25	1.92
1085230--1085720	31	15.5	31	81	4	433	21	16	31	30	1.95
1085230--1085711	64	7.6	64	81	6	464	21	16	31	30	1.95
1085688--1085759	29	2.5	30	90	4	112	26	11	33	29	1.91
1085706--1086761	33	32.6	33	75	9	660	38	10	28	22	1.87
1085727--1086761	67	15.9	66	73	10	628	38	10	28	22	1.87
1086035--1086372	126	2.7	125	83	5	317	39	9	28	23	1.85
1086035--1086397	127	2.9	126	81	6	308	39	9	29	22	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25