genome.fa.s20.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold20
Parameters: 2 7 7 80 10 50 1000
Length:  3599867

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  18  of  25  ( 2919 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2581163--2581333	69	2.5	69	81	8	179	56	10	3	29	1.49
2581163--2581486	139	2.3	136	77	15	317	54	12	2	30	1.51
2581230--2581400	70	2.5	70	78	11	174	55	11	2	30	1.47
2581585--2582306	73	10.0	73	79	8	676	53	13	1	31	1.50
2581585--2582306	218	3.4	213	78	7	708	53	13	1	31	1.50
2582289--2582317	15	1.9	15	100	0	58	51	20	0	27	1.47
2582401--2582478	23	3.3	23	73	18	79	58	8	1	30	1.37
2582686--2582739	19	2.8	19	71	2	54	38	0	0	61	0.96
2582761--2582822	24	2.6	25	84	7	83	30	0	1	67	1.00
2583678--2583716	20	2.0	20	85	5	53	51	0	5	43	1.24
2583922--2583965	15	2.9	15	79	3	52	29	0	0	70	0.88
2584293--2584423	50	2.6	51	82	12	155	48	5	1	44	1.34
2584222--2584442	53	4.2	52	82	6	236	53	3	0	41	1.24
2584387--2584486	43	2.4	42	86	3	137	51	2	4	43	1.32
2584657--2584728	22	3.3	21	73	7	63	40	9	6	43	1.65
2585168--2585242	20	3.8	20	91	3	116	28	14	14	42	1.85
2586870--2587108	79	2.9	79	84	7	282	28	25	12	33	1.92
2587082--2587156	28	2.7	28	85	4	98	26	30	16	26	1.96
2587141--2587272	50	2.6	49	87	9	194	29	26	12	31	1.92
2587142--2587309	50	3.3	50	83	4	151	30	26	11	31	1.91
2587294--2587469	79	2.2	79	82	0	217	27	25	14	33	1.94
2600894--2601106	100	2.1	100	93	1	365	24	30	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2601094--2601215	55	2.2	55	82	2	138	30	26	19	23	1.98
2601020--2601373	149	2.4	148	86	1	501	28	26	18	26	1.98
2601264--2602023	61	12.8	60	83	8	823	27	26	18	27	1.98
2601505--2601602	49	2.0	49	88	4	144	27	26	20	25	1.99
2603219--2603342	62	2.0	63	87	1	178	29	14	16	40	1.88
2605711--2605826	51	2.2	52	86	1	153	31	27	10	31	1.90
2605762--2605982	79	2.8	79	82	4	266	28	24	13	33	1.93
2606914--2606972	29	2.0	29	96	0	109	30	30	23	15	1.95
2610105--2610164	24	2.5	23	78	7	66	5	25	0	70	1.08
2611948--2612014	33	2.0	33	88	0	98	34	11	13	40	1.81
2611968--2611992	13	1.9	13	100	0	50	36	16	16	32	1.90
2612057--2612081	13	1.9	13	100	0	50	32	16	16	36	1.90
2618018--2618065	20	2.5	20	86	6	55	31	2	0	66	1.03
2618018--2618054	20	1.9	20	94	5	67	27	2	0	70	1.01
2620209--2620273	32	2.0	33	87	3	96	29	13	15	41	1.86
2620320--2620374	20	2.7	21	85	2	76	34	14	12	38	1.84
2620805--2620873	36	1.9	36	88	2	104	33	11	27	27	1.91
2621662--2621723	27	2.3	27	85	2	79	22	6	6	64	1.40
2621721--2621764	14	3.0	15	80	6	63	61	0	0	38	0.96
2622267--2622333	4	16.5	4	74	20	59	26	0	0	73	0.84
2622265--2622333	9	7.9	9	76	18	58	27	0	0	72	0.85
2622265--2622318	14	3.9	14	79	18	67	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2622267--2622331	33	2.0	33	90	6	105	27	0	0	72	0.85
2622278--2622333	15	3.5	15	71	21	51	28	0	0	71	0.86
2623491--2623534	23	1.9	23	90	9	72	54	0	0	45	0.99
2623690--2623728	2	20.0	2	94	5	71	0	51	0	48	1.00
2625655--2625724	33	2.1	33	94	0	122	24	17	32	25	1.96
2629313--2629378	2	33.5	2	96	3	125	50	0	0	50	1.00
2630153--2630195	2	21.5	2	95	0	77	51	48	0	0	1.00
2630704--2630822	58	2.1	58	100	0	238	38	17	20	23	1.93
2632422--2632502	19	4.4	19	68	25	66	56	0	0	43	0.99
2632522--2632573	17	3.1	16	83	10	59	34	1	0	63	1.06
2632614--2632649	18	2.1	18	89	5	56	33	0	0	66	0.92
2632712--2632761	22	2.4	22	81	15	61	50	0	2	48	1.12
2632680--2632769	36	2.5	37	73	7	87	51	0	1	47	1.08
2632808--2632851	24	2.0	23	86	13	65	59	0	0	40	0.98
2633850--2633885	18	2.1	18	89	5	56	63	0	0	36	0.94
2633837--2633887	26	1.9	26	88	4	75	64	0	0	35	0.94
2633856--2633901	22	2.1	21	84	11	58	56	2	0	41	1.11
2634224--2634261	19	2.1	19	85	5	51	60	7	2	28	1.38
2637097--2637134	2	19.0	2	94	0	67	50	2	0	47	1.15
2638951--2639151	90	2.2	92	85	5	289	38	4	4	52	1.42
2638964--2639138	93	1.9	92	91	3	291	36	5	4	53	1.44
2639342--2639393	27	1.9	27	84	7	70	44	0	5	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2639053--2639505	236	1.9	236	92	3	761	36	7	4	51	1.50
2638629--2639883	311	4.0	306	79	10	1413	38	6	3	51	1.44
2640689--2640776	40	2.2	40	80	7	101	57	1	0	40	1.06
2640655--2640809	50	3.0	49	85	11	177	56	1	0	42	1.07
2640981--2641028	22	2.2	22	82	14	55	50	6	4	39	1.47
2642148--2642376	79	2.9	79	80	5	255	33	13	26	27	1.94
2642310--2642427	51	2.3	51	86	0	155	28	15	29	26	1.96
2642410--2642486	28	2.7	30	90	7	117	23	22	32	22	1.98
2642282--2642585	158	1.9	158	80	6	357	29	14	28	26	1.95
2642470--2642632	51	3.2	51	87	3	222	33	9	25	31	1.87
2642572--2642791	79	2.8	77	77	7	246	32	11	26	29	1.91
2645832--2646163	45	7.4	45	75	14	220	43	11	26	18	1.83
2646197--2646980	62	12.7	62	84	4	1001	28	19	27	24	1.98
2646199--2646980	124	6.3	124	90	1	1192	28	19	27	24	1.98
2648051--2648105	25	2.2	25	83	6	67	0	7	9	83	0.81
2648062--2648106	13	3.5	13	84	9	65	0	2	11	86	0.65
2650585--2650774	80	2.4	80	79	6	208	34	14	24	25	1.94
2650585--2650815	79	2.9	79	73	8	207	34	13	24	27	1.93
2650746--2650866	51	2.3	52	82	1	163	32	13	25	28	1.93
2650670--2650947	130	2.1	131	82	7	334	35	12	23	28	1.91
2653234--2653366	50	2.7	48	91	2	212	41	15	16	26	1.88
2654733--2654950	78	2.8	78	76	10	203	34	9	24	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2654915--2654984	33	2.2	33	89	2	106	38	8	27	25	1.85
2654947--2655149	80	2.6	79	76	14	195	40	10	21	27	1.86
2656956--2656992	14	2.8	14	88	12	60	18	21	16	43	1.88
2656956--2656993	12	2.9	13	92	7	60	18	21	15	44	1.86
2657528--2657566	20	2.0	20	94	0	69	33	20	5	41	1.74
2658663--2658696	2	17.0	2	100	0	68	50	0	0	50	1.00
2659526--2659583	19	2.8	20	82	15	66	48	0	0	51	1.00
2659538--2659583	22	2.0	22	87	8	65	45	0	0	54	0.99
2659896--2659945	18	2.7	18	87	9	66	42	2	0	56	1.11
2663209--2663258	24	2.1	24	88	0	73	30	12	10	48	1.73
2663709--2663755	21	2.2	20	82	10	58	31	6	4	57	1.43
2663564--2663827	133	1.9	136	81	7	322	33	12	6	48	1.65
2663972--2663999	2	14.0	2	100	0	56	50	0	0	50	1.00
2664042--2664084	17	2.5	17	80	0	59	46	2	0	51	1.13
2664046--2664127	15	5.3	15	68	17	51	47	1	0	51	1.08
2664100--2664141	21	2.0	21	90	9	68	42	0	2	54	1.13
2664167--2664213	20	2.4	19	82	7	58	51	2	0	46	1.13
2664313--2664338	13	2.0	13	100	0	52	53	0	0	46	1.00
2666356--2666448	32	2.8	33	83	8	125	55	0	0	44	0.99
2666377--2666425	14	3.2	14	74	20	53	53	0	0	46	1.00
2666377--2666439	18	3.7	17	72	18	51	52	0	0	47	1.00
2666407--2666453	18	2.6	20	81	18	59	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2666420--2666462	8	5.4	8	81	10	52	58	0	0	41	0.98
2668019--2668064	15	3.1	15	81	9	58	50	0	2	47	1.13
2673995--2674028	2	17.0	2	93	0	59	2	50	0	47	1.16
2674274--2674319	24	1.9	24	90	0	74	15	28	23	32	1.95
2680924--2680951	2	14.0	2	100	0	56	50	0	0	50	1.00
2681417--2681449	2	17.0	2	93	6	59	48	0	0	51	1.00
2684954--2684986	4	8.2	4	100	0	66	24	0	24	51	1.48
2685538--2685563	8	3.2	8	100	0	52	38	23	0	38	1.55
2685506--2685543	2	19.0	2	100	0	76	50	0	0	50	1.00
2685796--2685824	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25